mRNA_P-littoralis_Contig1282.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1282.16.1
Unique NamemRNA_P-littoralis_Contig1282.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 7.390e-46
Identity = 87/134 (64.93%), Postives = 101/134 (75.37%), Query Frame = 2
Query:  449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
            +D +G R+EAE LVSKCLLQ +GG G+RVHDLVLEFV + I+A+ E+ E+A  LQAQYL R DV++ Y +PEHGAG QGLFFLDALWRSVEKLSGD +LEV SYR SL E ESC AT   A  Y  V  L  IQ
Sbjct:  301 EDAEGTREEAEGLVSKCLLQAVGGSGYRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSYGDPEHGAGNQGLFFLDALWRSVEKLSGDPELEVASYRASLGELESCEATEDVASSYRWVGFLFNIQ 434          
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.100e-44
Identity = 87/134 (64.93%), Postives = 101/134 (75.37%), Query Frame = 2
Query:  449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
            +D +G RD+AE LVSKCLL  +GGGG+RVHDLVLEF  + I+A+ E  ++A  LQAQYL R DV+EGY +PEHGAG QGLFFLDALWRSVEKLSGD +LEV SY  SL E ESC AT   A+ Y SV  L  IQ
Sbjct:  560 EDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGYGDPEHGAGGQGLFFLDALWRSVEKLSGDPELEVASYHNSLGELESCEATKAVARSYWSVGFLFNIQ 693          
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 1.980e-44
Identity = 86/135 (63.70%), Postives = 105/135 (77.78%), Query Frame = 2
Query:  446 SQDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
            ++DT G R++AE LVSKCLLQD+GGGG+RVHDLVL+FV  +IKAD+E+A++   LQAQ+L R +V++ Y +PEHGAG QGLF LDALWRSVE+LSGD +LEV SY TSL   ESC AT   A  YSSV  L  IQ
Sbjct:  436 TEDTGGTREDAEGLVSKCLLQDVGGGGYRVHDLVLDFVKIKIKADMEMAKKIAALQAQFLGRLNVLKSYEHPEHGAGNQGLFVLDALWRSVEQLSGDPKLEVPSYSTSLAALESCEATTVVASSYSSVGFLFSIQ 570          
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 2.870e-44
Identity = 86/134 (64.18%), Postives = 99/134 (73.88%), Query Frame = 2
Query:  449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
            +D +G RD+AE LVSKCLL  +GGGG+RVHDLVLEF  + I+A+ E  ++A  LQAQYL R DV+E Y +PEHG G+QGLFFLDALWRSVEKLSGD  LEV SYR SL E ESC AT   A  Y SV  L  IQ
Sbjct:  543 EDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLESYGDPEHGTGDQGLFFLDALWRSVEKLSGDPGLEVASYRASLEELESCEATEAVATSYGSVGFLFNIQ 676          
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 3.010e-44
Identity = 83/134 (61.94%), Postives = 103/134 (76.87%), Query Frame = 2
Query:  449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
            +D +G RDEAE LV+KCLL  +G GG+RVHD+VLEF  + I+AD E  E+A  LQAQ+L R DV++ YR+PEHGAG++GLFFLD+LWRSVEKLSGD +LEV +YR SLRE ESC AT   A  YS+V  L + Q
Sbjct:  518 EDAEGTRDEAEGLVNKCLLHAVGDGGYRVHDMVLEFAKTSIRADEETVEKATALQAQFLGRLDVLKSYRDPEHGAGDRGLFFLDSLWRSVEKLSGDPELEVTTYRASLRELESCKATEDMASSYSAVGFLFDAQ 651          
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.020e-38
Identity = 79/134 (58.96%), Postives = 94/134 (70.15%), Query Frame = 2
Query:  449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
            +D +G RDEAE LVSKCLL  +GGGG+RVHDLVLE+  +RI+AD E+  +   LQA +L R DV++ YR+PEHGAG Q LFFLDALWRSVEKLSGD +LEV          ESC AT   A+ Y SV  L  IQ
Sbjct:  535 EDAEGTRDEAEGLVSKCLLHAVGGGGYRVHDLVLEYAKTRIRADAEMVRKVTALQAHFLGRLDVLKSYRDPEHGAGNQSLFFLDALWRSVEKLSGDPELEVAL--------ESCEATEAVARSYWSVGFLFNIQ 660          
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 1.530e-38
Identity = 80/134 (59.70%), Postives = 95/134 (70.90%), Query Frame = 2
Query:  449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
            +D +G   EAE LVSK LL  +GGGG+R+HDLVL+F  + I+A+ E  + A  LQAQYL R DVVE Y +PEHGAG+QG+FFLDALWRSVEKLSGD QLEV SYR SL   E   AT   A+ Y SV  L  +Q
Sbjct:  344 EDAEGTHAEAEGLVSKYLLHAVGGGGYRMHDLVLDFAKTSIRAEEETVKRATALQAQYLGRLDVVESYGDPEHGAGDQGIFFLDALWRSVEKLSGDPQLEVASYRASLGALEWGEATEAAARSYFSVGFLFNVQ 477          
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: A0A6H5KFQ0_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ0_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.410e-26
Identity = 64/99 (64.65%), Postives = 76/99 (76.77%), Query Frame = 3
Query:    3 VIELCGRLPLVLAIAGSMPVVKGKGLTADAWKQLTKDLENVAKKMRISGEQLTSLSVVLETSFVALAQERQEELLKMAVLAAGAVAPIEMLRNLWQTEV 299
            V+  CGR PL L +A SMP+VKGKGLTA AW +L K+LENVAKKMR  GEQ TSL +V+ETSF AL   ++EE   M+V+AAGAVAPIEML NLW  +V
Sbjct:  322 VVTRCGRPPLGLGMAVSMPIVKGKGLTAGAWTKLFKELENVAKKMRARGEQSTSLKLVIETSFDALLARKREE---MSVMAAGAVAPIEMLLNLWGIQV 417          
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: A0A6H5JY23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY23_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.170e-25
Identity = 55/88 (62.50%), Postives = 61/88 (69.32%), Query Frame = 2
Query:  587 VAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
            + E+A  LQA +L   DV++ Y NPEHGA  QGLF LDALWRSVEKLSGDS+LEV SY TSL E ESC AT   A  YS V  L  IQ
Sbjct:    1 MVEKATTLQAHFLGTLDVLKDYENPEHGADNQGLFVLDALWRSVEKLSGDSELEVASYSTSLGELESCKATTDVASSYSFVGFLFNIQ 88          
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 3.620e-25
Identity = 60/98 (61.22%), Postives = 74/98 (75.51%), Query Frame = 3
Query:    3 VIELCGRLPLVLAIAGSMPVVKGKGLTADAWKQLTKDLENVAKKMRISGEQLTSLSVVLETSFVALAQERQEELLKMAVLAAGAVAPIEMLRNLWQTE 296
            V++ CGRLPLVLAIAGSMPVVKGKGL   AW++L ++ ENV   M   GE+  +L +VL  SF ALA  ++EE L+MAVLA GAVAP EMLRNLW+ +
Sbjct:  440 VVDRCGRLPLVLAIAGSMPVVKGKGLKDGAWEELIEEFENVTTIMWEPGEESRNLDMVLGASFNALAARKREEFLRMAVLAPGAVAPFEMLRNLWEIQ 537          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5LJA6_9PHAE7.390e-4664.93NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI1.100e-4464.93NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KU94_9PHAE1.980e-4463.70NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G720_ECTSI2.870e-4464.18NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LGG5_ECTSI3.010e-4461.94NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KXS7_9PHAE1.020e-3858.96NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FUD7_ECTSI1.530e-3859.70NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KFQ0_9PHAE1.410e-2664.65NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JY23_9PHAE3.170e-2562.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPV9_ECTSI3.620e-2561.22NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1282contigP-littoralis_Contig1282:27273..28134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G722
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size862
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.39e-47
EggNOG OGsCOG0457@1|root,KOG4658@1|root,KOG1840@2759|Eukaryota,KOG4658@2759|Eukaryota
DescriptionADP binding
Cds size423
COG categoryS
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789572.5323226-UTR-P-littoralis_Contig1282:27272..277111680789572.5323226-UTR-P-littoralis_Contig1282:27272..27711Pylaiella littoralis U1_48UTRP-littoralis_Contig1282 27273..27711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789572.5464587-CDS-P-littoralis_Contig1282:27711..281341680789572.5464587-CDS-P-littoralis_Contig1282:27711..28134Pylaiella littoralis U1_48CDSP-littoralis_Contig1282 27712..28134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1282.16.1prot_P-littoralis_Contig1282.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1282 27712..28134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1282.16.1

>prot_P-littoralis_Contig1282.16.1 ID=prot_P-littoralis_Contig1282.16.1|Name=mRNA_P-littoralis_Contig1282.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
MVSQDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEV
AEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDS
QLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQVGP*
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mRNA from alignment at P-littoralis_Contig1282:27273..28134+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1282.16.1 ID=mRNA_P-littoralis_Contig1282.16.1|Name=mRNA_P-littoralis_Contig1282.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=862bp|location=Sequence derived from alignment at P-littoralis_Contig1282:27273..28134+ (Pylaiella littoralis U1_48)
AGGTTATCGAACTCTGTGGGCGCCTTCCACTGGTGCTCGCCATCGCGGGT TCCATGCCCGTCGTGAAAGGGAAGGGCTTGACCGCCGATGCCTGGAAACA ACTGACCAAAGACTTGGAGAACGTGGCAAAGAAGATGCGCATTTCCGGAG AGCAGTTAACGTCGCTCAGTGTGGTCCTGGAGACAAGCTTTGTTGCTTTG GCACAAGAGAGACAGGAGGAGTTGCTGAAGATGGCTGTGCTGGCCGCAGG TGCTGTTGCGCCAATCGAGATGCTGCGTAACCTCTGGCAGACGGAGGTAC GCTGATATGCTCTGCGCGTCGTCCAGAGTCGGAAGGACTGGATGGTTTTC AACAACAAAGCAACAATCACAAATGCTCTGTTTTTTTAAGTGAAACCTCT TTTGCTTTGTGTCAAACTCGATGCACATCTGACCTGACGATGGTATCGCA GGACACACAGGGCGCCCGAGACGAAGCTGAGTGTCTGGTGAGCAAGTGTT TGCTGCAAGATATGGGTGGAGGCGGGCACCGTGTCCACGACCTCGTTCTC GAGTTTGTGACAAGCAGGATCAAGGCTGACGTTGAGGTGGCGGAAGAGGC TATAATGCTGCAGGCGCAATACCTCGCCAGAGCAGACGTGGTCGAGGGCT ACCGAAACCCGGAGCATGGTGCTGGTGAACAAGGATTGTTCTTTTTGGAT GCCCTGTGGCGCTCGGTGGAGAAGCTCTCCGGGGACTCACAACTGGAAGT TCGCTCGTACCGCACCAGCCTCAGGGAGTCGGAGTCATGCGGGGCGACTT TCCACACGGCAAAGTTCTACTCGTCTGTCGCACGCTTGCTCGAGATCCAG GTGGGACCTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1282:27273..28134+

>mRNA_P-littoralis_Contig1282.16.1 ID=mRNA_P-littoralis_Contig1282.16.1|Name=mRNA_P-littoralis_Contig1282.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig1282:27273..28134+ (Pylaiella littoralis U1_48)
ATGGTATCGCAGGACACACAGGGCGCCCGAGACGAAGCTGAGTGTCTGGT
GAGCAAGTGTTTGCTGCAAGATATGGGTGGAGGCGGGCACCGTGTCCACG
ACCTCGTTCTCGAGTTTGTGACAAGCAGGATCAAGGCTGACGTTGAGGTG
GCGGAAGAGGCTATAATGCTGCAGGCGCAATACCTCGCCAGAGCAGACGT
GGTCGAGGGCTACCGAAACCCGGAGCATGGTGCTGGTGAACAAGGATTGT
TCTTTTTGGATGCCCTGTGGCGCTCGGTGGAGAAGCTCTCCGGGGACTCA
CAACTGGAAGTTCGCTCGTACCGCACCAGCCTCAGGGAGTCGGAGTCATG
CGGGGCGACTTTCCACACGGCAAAGTTCTACTCGTCTGTCGCACGCTTGC
TCGAGATCCAGGTGGGACCTTAA
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