mRNA_P-littoralis_Contig128.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig128.41.1
Unique NamemRNA_P-littoralis_Contig128.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig128.41.1 vs. uniprot
Match: D7FVC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC5_ECTSI)

HSP 1 Score: 318 bits (815), Expect = 3.040e-101
Identity = 193/406 (47.54%), Postives = 251/406 (61.82%), Query Frame = 1 
Query:  163 QWHVKGELADFVAHVSNLQHIVDMCNTSELSSINKADMKRIMEWGALIEEVIGTLSTDSQRD-LALSLPFTATYTCSLRAQITRLFSARRWVLGSMLGSAFLGDHPKPEALLMWIISEYNELPKLPGEQHEGRDQPTILSSFVEDAGNIVTCHGRLAVMSHAYSALVVCVGGSSEMGPGISASDRSEESIREVSITRRPCVYEMSVETAQKRAYASNCYNQLLSEYDQDVRQGK------RATSFVEELVEIGRADTVAVEVLCLILLEPWRRTTHT--------------DSPNSPLNNALLQQASGLIFTTNQKVGFVHDARLWSLDKWLMAEVSHYYESFAEIYVDELMHSPNGLSEVRRQELDGGYKTSADLQGLRLRIDTIQDRLGVLASRSERLKRLVYR 1317
            QWH    L +FV HV   + +VD   T EL +++K  +K++M WG  IE+V+G L+TDSQRD LA +L        S RA + RL+ ARRWVL SMLGS FL DHP+PE+L+MWI++ Y ELP L   Q  G +     +SFV+DA  +V   G + V+SHAYSAL++C GG S++   IS  D +    +    TR PC+YEMSV+TAQKRAYASNC+  L S   Q   Q K      + TSF+ EL E+ + D V++E+LCL+LLEPWR+ T T              +S  + LN ALL+Q  G          F+ DARLWSLD+WL+ E+SH +ESFA  YV++L  S   L  VRR+     Y TSAD  GL LR + +Q RLGVL SRSERLKRLV+R
Sbjct:   64 QWHSNVGLDEFVGHVLTFKSLVDSTQTRELGTVDKEQLKKMMGWGLFIEQVVGGLNTDSQRDSLARALGL------SHRAILPRLYQARRWVLRSMLGSTFLVDHPRPESLVMWIMACYEELPPLQAHQDAGGETDQS-ASFVDDASAVVKSRGDVGVVSHAYSALLLC-GGGSKLASSISTRDAAGGGGKS---TRVPCLYEMSVDTAQKRAYASNCFTFLSSRCAQGDGQHKHGVLAEQVTSFILELSELAQTDIVSLEILCLVLLEPWRQATRTAKHQAEDSACDSQQESLGTSLNGALLKQVEG----------FLDDARLWSLDEWLLGEISHRHESFARAYVEKLTRSREEL--VRRE-----YLTSADSSGLCLRKEDVQSRLGVLCSRSERLKRLVFR 441
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BLAST of mRNA_P-littoralis_Contig128.41.1 vs. uniprot
Match: A0A6H5K2R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R8_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 6.500e-96
Identity = 197/440 (44.77%), Postives = 254/440 (57.73%), Query Frame = 1 
Query:  163 QWHVKGELADFVAHVSNLQHIVDMCNTSELSSINKADMKRIMEWGALIEE--------------------------------VIGTLSTDSQRD-LALSLPFTATYTCSLRAQITRLFSARRWVLGSMLGSAFLGDHPKPEALLMWIISEYNELPKLPGEQHEG--RDQPTILSSFVEDAGNIVTCHGRLAVMSHAYSALVVCVGGSSEMGPGISASDRSEESIREVSITRRPCVYEMSVETAQKRAYASNCYNQLLSEYDQDVRQGK------RATSFVEELVEIGRADTVAVEVLCLILLEPWRRTTHT--------------DSPNSPLNNALLQQASGLIFTTNQKVGFVHDARLWSLDKWLMAEVSHYYESFAEIYVDELMHSPNGLSEVRRQELDGGYKTSADLQGLRLRIDTIQDRLGVLASRSERLKRLVYR 1317
            QWH    L +FV HV   + +VD   T EL +++K  + +IM WG  IE+                                V+G L+TDSQRD LA +L        S RA + RL+ ARRWVL SMLGS FL DHP PE+LLMW+++ Y ELP L   Q  G   DQP   +SFV DA  +V   G + V+SHAYSAL++C GG S++   IS  D + +  +  S+   PC+YEMSV+TAQKRAYASNC+  L S   QD  Q K      + TSF+ EL E+ + D V++E+LCL+LLEPWR+ T T              +S  + LN A+L+QAS L+       GF+ DARLWSLD+WL+ E+SH YESFA  YV++L  S   L  VRR+ L     T AD  GL  R + +Q RLGVL SRSERLKRLV+R
Sbjct:   34 QWHSSVGLDEFVGHVLKFKSLVDSTQTRELGTVDKEQLDKIMGWGIFIEQEDRKRLKNKRGTIGASSSFPYSYSYRRLAFVQVVGGLNTDSQRDSLAQALGL------SHRAILPRLYQARRWVLRSMLGSTFLADHPHPESLLMWVMACYEELPPLQAHQDAGGETDQP---ASFVNDASAVVKSRGDVGVVSHAYSALLLC-GGGSKLASSISTRDAAGDGGKSTSV---PCLYEMSVDTAQKRAYASNCFTFLSSRCAQDDGQHKHGVLAEQVTSFILELSELAQTDIVSLEILCLVLLEPWRQATCTAKHQAEGSACDSQQESLGTSLNAAVLKQASALV------EGFLGDARLWSLDEWLLGEISHRYESFARAYVEKLTRSREEL--VRRECL-----TPADWTGLCSRKEDVQSRLGVLCSRSERLKRLVFR 447
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig128.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVC5_ECTSI3.040e-10147.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2R8_9PHAE6.500e-9644.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig128contigP-littoralis_Contig128:181517..184463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1335
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_000590.1
Cds size1254
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig128.41.1prot_P-littoralis_Contig128.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig128 181889..184463 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789569.502322-UTR-P-littoralis_Contig128:181516..1815831680789569.502322-UTR-P-littoralis_Contig128:181516..181583Pylaiella littoralis U1_48UTRP-littoralis_Contig128 181517..181583 +
1680789569.5112941-UTR-P-littoralis_Contig128:181874..1818881680789569.5112941-UTR-P-littoralis_Contig128:181874..181888Pylaiella littoralis U1_48UTRP-littoralis_Contig128 181875..181888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789569.5212486-CDS-P-littoralis_Contig128:181888..1821191680789569.5212486-CDS-P-littoralis_Contig128:181888..182119Pylaiella littoralis U1_48CDSP-littoralis_Contig128 181889..182119 +
1680789569.5290937-CDS-P-littoralis_Contig128:182472..1825271680789569.5290937-CDS-P-littoralis_Contig128:182472..182527Pylaiella littoralis U1_48CDSP-littoralis_Contig128 182473..182527 +
1680789569.5393085-CDS-P-littoralis_Contig128:183051..1832351680789569.5393085-CDS-P-littoralis_Contig128:183051..183235Pylaiella littoralis U1_48CDSP-littoralis_Contig128 183052..183235 +
1680789569.5531113-CDS-P-littoralis_Contig128:183492..1840011680789569.5531113-CDS-P-littoralis_Contig128:183492..184001Pylaiella littoralis U1_48CDSP-littoralis_Contig128 183493..184001 +
1680789569.5660257-CDS-P-littoralis_Contig128:184188..1844631680789569.5660257-CDS-P-littoralis_Contig128:184188..184463Pylaiella littoralis U1_48CDSP-littoralis_Contig128 184189..184463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig128.41.1

>prot_P-littoralis_Contig128.41.1 ID=prot_P-littoralis_Contig128.41.1|Name=mRNA_P-littoralis_Contig128.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=418bp
MAAHMENEVAEHSRRQQQQQQQQQQQQQWHVKGELADFVAHVSNLQHIVD
MCNTSELSSINKADMKRIMEWGALIEEVIGTLSTDSQRDLALSLPFTATY
TCSLRAQITRLFSARRWVLGSMLGSAFLGDHPKPEALLMWIISEYNELPK
LPGEQHEGRDQPTILSSFVEDAGNIVTCHGRLAVMSHAYSALVVCVGGSS
EMGPGISASDRSEESIREVSITRRPCVYEMSVETAQKRAYASNCYNQLLS
EYDQDVRQGKRATSFVEELVEIGRADTVAVEVLCLILLEPWRRTTHTDSP
NSPLNNALLQQASGLIFTTNQKVGFVHDARLWSLDKWLMAEVSHYYESFA
EIYVDELMHSPNGLSEVRRQELDGGYKTSADLQGLRLRIDTIQDRLGVLA
SRSERLKRLVYRKRRVR*
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mRNA from alignment at P-littoralis_Contig128:181517..184463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig128.41.1 ID=mRNA_P-littoralis_Contig128.41.1|Name=mRNA_P-littoralis_Contig128.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2947bp|location=Sequence derived from alignment at P-littoralis_Contig128:181517..184463+ (Pylaiella littoralis U1_48)
AGCCGAGAGGAAGGAAGAAGCCATCAATACTGTGTGCTCGAGGTCAGGGG
TTGGGTGAAGCGTTGAGGTAGGGTGATTGTACGTCTTGCGTCAAAGAACG
GTGCGTGTTCGTTCATAATTTGTTCAAACTGGCCGCTTTCCAGTAGTTCA
GACATGCGCTCCGCCCGAACGATTTTGCTATTTTGCAGACCACCGTCGCA
ATATCGGGGCGCTGGTTTGCTCGCGGCCTTGATCATGACCCCCAACATCT
CATTTCCACTTTCTTTTTAATTGGATTAGAAGGTGTTTTTGCTTCCTGCA
TGCAACCCCGTCCAAGTGTTGGGGAAAATCGTATCGAAAAACCGTTCTTG
AACGACAGGAGAGACTTAGCTTATGGCAGCCCACATGGAAAACGAAGTGG
CGGAACACAGTCGACGGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAA
CAGCAATGGCACGTGAAGGGCGAGCTCGCCGACTTTGTAGCCCACGTCTC
CAACCTTCAGCACATCGTTGACATGTGCAATACGTCAGAATTGAGCTCGA
TCAACAAGGCAGATATGAAGAGAATCATGGAATGGGGAGCGTTGATCGAA
GAGGTGAAGAAACATGTTGTGAATTTGTGGCATTTTAGTCTCTAGAGTTG
TTTGTTAGCATTCCCAAGGTAAAATGTTTTGGTACGGAATTCAAACTGTG
GTCAACGCTTTTCAATTGTGTGCCTGGCATCAAGTCATGTGTGTGGTTTG
CTTGCCTTTCGTGTCACGTTGAGTTCTCAAGGTGCAGAAAGTTAGTATAT
ATACAGACCAAACGACAAAAAGAAAGGAAGAATATGACGCGTTAAACCAG
ATCGAAGAAGGACAACGGCTGTTTACTTATACTGATGTGGTATTCCACAA
GGCCTACCCCACCCTGAAATAAACACAGTAAAACATGATGAGTCGCTTTT
GCGCAGGTTATCGGGACTTTGAGTACGGACTCGCAGCGGGATCTTGCTTT
GTCCTTACCATGTCTCAGCATCGAAGGCTCTTCACGCTTTGCCACTCTAT
CGCATCTCCGCCAAGGTGAGCAAACAGCAGTATAACGCTTTTCGCTCAGC
CTTCTTGTTGCATTTTCTTGTGTGACTTGGTCGTGTGGGCGAGCAAGCGA
CTTTTGTACTTCCAAAGCATGTTGTAAGGACAGTATTGAAGCTGCAGAGA
TGGACATCTATCTGAGAATGTGCGACAAGTCGGTGAGCGCAGAAAAATCT
AAAGGGATACATCACCGTCCTGGAGCGGTTGTCACTTAAATTGAAACGCT
ATAATGAGATGTTAACCTTTATTGAGAACGTTCCTACATCATATTTTAAA
AGTGTGAGTTCAACGCTCGAACCGCACTTCCACTACTGAAATGCGGCTAC
ACTCACTTCATGGCTTAAGGTTTTCAATCGTGAAAGTTTCTCAAGATACA
CGACAAAGCTGAACGTGACATTGAAGCTGCAAGTTTTTTCGACGACTGTG
CTGTTTTATTTCCGATGCAAGTGAAAGCTGCGAAGTCACCGCCACCTACA
CTTGCTCACTTAGAGCTCAAATTACACGACTTTTCTCAGCCCGTAGGTGG
GTACTGGGTTCCATGCTTGGAAGTGCCTTCCTCGGTGATCACCCGAAACC
CGAGGCTCTGCTGATGTGGATCATTTCGGAGTACAATGAACTCCCGAAGC
TCCCAGGTGAGCAACACGAGTCCTTTTCTTCCAGAACGCCTGTTTTATAA
GCAAATCACGTAGTTGCGAACGTATTATGGCTTGTTCTAATCGGGGGACG
AGGATAGCTCACTTGCTCTTGTTTTCTTGTCGATCTCTACTTTGCCCTTG
TGCGTTGGGGTTCATCCTCGGTGACCGACAACTCCCTATTTGCTTTGTTC
GTGGCAGTACGCACATGCCGATTCGTTACCATTTCGTTCAATTTTCCAAC
CGCTCGACAGAATCCGGAAACGATAGGGGACGCGACCAACCCACCATATT
AAGCTCCTTCGTGGAGGATGCAGGGAACATTGTGACATGTCATGGACGTT
TGGCAGTAATGTCCCATGCATACTCGGCTCTCGTAGTCTGCGTGGGTGGA
AGCAGCGAGATGGGGCCTGGCATCTCAGCTTCAGATAGGAGTGAAGAGAG
CATTCGTGAGGTTAGCATAACGCGAAGGCCATGCGTCTATGAGATGAGTG
TCGAGACTGCACAAAAGCGCGCGTATGCAAGCAACTGCTACAACCAGTTG
TTATCGGAGTACGACCAGGACGTTCGACAGGGCAAGCGGGCGACCAGCTT
CGTTGAAGAATTGGTTGAAATTGGGCGCGCGGACACTGTTGCGGTAGAAG
TCTTATGTCTCATTCTGTTGGAGCCATGGAGACGAACGACCCACACCGAT
TCGCCGAACTCGCCACTCAACAACGCGCTTCTCCAGCAGGCAAGCGGACT
CATTTTTACCACGAACCAAAAAGTCGGGTTTGTTCGTTCCCGGGAACACA
ACTTGAGCCACCACAACAAATGAGACTTTGGCGCCTGCCGTGAATCGTGT
GGTACTCCGTTGCCTCTAATCTGCATGCCGTACCCCGCTCAATTTCACAT
CAGACCCACTTACGCGACAGGTTCGCATGAATCTTTAACGTTTGACGTCC
CTGCAGGTTTTGACGTTTCGAGATGATGCAAGACTGTGGTCCTTGGACAA
ATGGCTCATGGCCGAGGTATCTCACTACTACGAGTCATTCGCAGAAATCT
ACGTGGACGAACTGATGCATTCGCCAAACGGCCTGAGCGAAGTCAGGAGA
CAAGAGCTGGATGGCGGGTACAAAACATCCGCCGATCTCCAGGGTCTTCG
CCTCCGGATAGATACCATACAGGACAGGCTTGGCGTTTTGGCTTCAAGAA
GCGAGCGATTGAAAAGACTCGTGTACCGCAAACGGCGCGTAAGATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig128:181517..184463+

>mRNA_P-littoralis_Contig128.41.1 ID=mRNA_P-littoralis_Contig128.41.1|Name=mRNA_P-littoralis_Contig128.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1254bp|location=Sequence derived from alignment at P-littoralis_Contig128:181517..184463+ (Pylaiella littoralis U1_48)
ATGGCAGCCCACATGGAAAACGAAGTGGCGGAACACAGTCGACGGCAGCA
GCAGCAGCAGCAACAGCAGCAACAGCAACAGCAATGGCACGTGAAGGGCG
AGCTCGCCGACTTTGTAGCCCACGTCTCCAACCTTCAGCACATCGTTGAC
ATGTGCAATACGTCAGAATTGAGCTCGATCAACAAGGCAGATATGAAGAG
AATCATGGAATGGGGAGCGTTGATCGAAGAGGTTATCGGGACTTTGAGTA
CGGACTCGCAGCGGGATCTTGCTTTGTCCTTACCATTCACCGCCACCTAC
ACTTGCTCACTTAGAGCTCAAATTACACGACTTTTCTCAGCCCGTAGGTG
GGTACTGGGTTCCATGCTTGGAAGTGCCTTCCTCGGTGATCACCCGAAAC
CCGAGGCTCTGCTGATGTGGATCATTTCGGAGTACAATGAACTCCCGAAG
CTCCCAGGTGAGCAACACGAGGGACGCGACCAACCCACCATATTAAGCTC
CTTCGTGGAGGATGCAGGGAACATTGTGACATGTCATGGACGTTTGGCAG
TAATGTCCCATGCATACTCGGCTCTCGTAGTCTGCGTGGGTGGAAGCAGC
GAGATGGGGCCTGGCATCTCAGCTTCAGATAGGAGTGAAGAGAGCATTCG
TGAGGTTAGCATAACGCGAAGGCCATGCGTCTATGAGATGAGTGTCGAGA
CTGCACAAAAGCGCGCGTATGCAAGCAACTGCTACAACCAGTTGTTATCG
GAGTACGACCAGGACGTTCGACAGGGCAAGCGGGCGACCAGCTTCGTTGA
AGAATTGGTTGAAATTGGGCGCGCGGACACTGTTGCGGTAGAAGTCTTAT
GTCTCATTCTGTTGGAGCCATGGAGACGAACGACCCACACCGATTCGCCG
AACTCGCCACTCAACAACGCGCTTCTCCAGCAGGCAAGCGGACTCATTTT
TACCACGAACCAAAAAGTCGGGTTTGTTCATGATGCAAGACTGTGGTCCT
TGGACAAATGGCTCATGGCCGAGGTATCTCACTACTACGAGTCATTCGCA
GAAATCTACGTGGACGAACTGATGCATTCGCCAAACGGCCTGAGCGAAGT
CAGGAGACAAGAGCTGGATGGCGGGTACAAAACATCCGCCGATCTCCAGG
GTCTTCGCCTCCGGATAGATACCATACAGGACAGGCTTGGCGTTTTGGCT
TCAAGAAGCGAGCGATTGAAAAGACTCGTGTACCGCAAACGGCGCGTAAG
ATAG
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