mRNA_P-littoralis_Contig128.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig128.15.1
Unique NamemRNA_P-littoralis_Contig128.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig128.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig128contigP-littoralis_Contig128:53987..58639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2249
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_000495.1
Cds size1968
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig128.15.1prot_P-littoralis_Contig128.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig128 54069..58440 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789567.8696036-UTR-P-littoralis_Contig128:53986..540681680789567.8696036-UTR-P-littoralis_Contig128:53986..54068Pylaiella littoralis U1_48UTRP-littoralis_Contig128 53987..54068 +
1680789567.9629438-UTR-P-littoralis_Contig128:58440..586391680789567.9629438-UTR-P-littoralis_Contig128:58440..58639Pylaiella littoralis U1_48UTRP-littoralis_Contig128 58441..58639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789567.8849754-CDS-P-littoralis_Contig128:54068..541521680789567.8849754-CDS-P-littoralis_Contig128:54068..54152Pylaiella littoralis U1_48CDSP-littoralis_Contig128 54069..54152 +
1680789567.8977864-CDS-P-littoralis_Contig128:55046..551791680789567.8977864-CDS-P-littoralis_Contig128:55046..55179Pylaiella littoralis U1_48CDSP-littoralis_Contig128 55047..55179 +
1680789567.911371-CDS-P-littoralis_Contig128:55582..557271680789567.911371-CDS-P-littoralis_Contig128:55582..55727Pylaiella littoralis U1_48CDSP-littoralis_Contig128 55583..55727 +
1680789567.9233243-CDS-P-littoralis_Contig128:56036..562251680789567.9233243-CDS-P-littoralis_Contig128:56036..56225Pylaiella littoralis U1_48CDSP-littoralis_Contig128 56037..56225 +
1680789567.9317305-CDS-P-littoralis_Contig128:56600..568371680789567.9317305-CDS-P-littoralis_Contig128:56600..56837Pylaiella littoralis U1_48CDSP-littoralis_Contig128 56601..56837 +
1680789567.9414146-CDS-P-littoralis_Contig128:57011..572851680789567.9414146-CDS-P-littoralis_Contig128:57011..57285Pylaiella littoralis U1_48CDSP-littoralis_Contig128 57012..57285 +
1680789567.9540274-CDS-P-littoralis_Contig128:57534..584401680789567.9540274-CDS-P-littoralis_Contig128:57534..58440Pylaiella littoralis U1_48CDSP-littoralis_Contig128 57535..58440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig128.15.1

>prot_P-littoralis_Contig128.15.1 ID=prot_P-littoralis_Contig128.15.1|Name=mRNA_P-littoralis_Contig128.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=656bp
MKGITTKLRERPAHQGSLSTKFPWSLQPVSRIVGQRPLEFTRRKAWIAAP
VRFGNGISAVTSLCLCDEASTGGPSLLISGDEDGGVSVVKVEGGGDDLSA
SGCFATPELRRVRLHSSCVNTIKVLPDQRGYVCAGDDGALSAVASFEASS
EEDLRRATFALTGHSGFVTDCDTAQSGHAVLSSSTDGRMLLWDPVASNTP
VTIISVGRPLNSVCFSAGDPYALLCAPELGTACSSRGGGGGSGSSSGENG
VGGADLVQIWDLRFLRCFKDFIPAAVATAFGEDPSVSAPHAASMQPPPPQ
SPQIWSASTWSSDSSSSGPATVRSSVARTPSQVPSWLTTALGSTSAVSPA
TPLLRRSAWTNDSSDAESSEKRWSRGRGSLWSCGTPESTERENTIPASSP
WSETRRGSEYASTPSRNPTSSVKEQGPSMPARMTAPRRDGPSASLRVTSL
PASGCLHEKNGKTWVPGNLKTWQASNRRARAAGARERAGVACVACSGSTN
TSAFSVQVSGDGTRILVASRDRTVTLFDAQSREVVYRFGHPRLSTRACPI
FVEGDQVGGARGWGRGRGGSGGGYTFGGMMEGEVRCWRVGSQFPNRVFKS
AVHHEGFEVCSLATSRNGGMFASADSSGMVCVQSATWGREAQDGSGEGAG
HHEGK*
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mRNA from alignment at P-littoralis_Contig128:53987..58639+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig128.15.1 ID=mRNA_P-littoralis_Contig128.15.1|Name=mRNA_P-littoralis_Contig128.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4653bp|location=Sequence derived from alignment at P-littoralis_Contig128:53987..58639+ (Pylaiella littoralis U1_48)
TGGGCGTTGGTCTTGGCGACGTCTCCCTGTCTCTCTCTCTCTCTCTCTCT
CTCTTCCGGGCGCATGTTCGTATGACAGCCAGATGAAAGGCATCACAACA
AAGCTTCGCGAGAGGCCTGCTCACCAAGGGAGCTTGTCGACGAAGTTCCC
TTGGTCACTGCAGCCGGTGAGGATATGATTGCTTGAAATTTGAATTCATG
AATTTGAAAATCAAGCACGTTTTACTACCCAAGGTTCACTTCGTGCACAT
CGTGACACTAAAGAAGTACTCCGACGCACATTATACGCACGTCGTGCATG
ATGCCGTTATCGTGTACACCACCGCCATGTAGAGGCTACACTGCTGTACC
TGCAACAGCTATCACGCGACCGACAGTAGAATATGCATCGCCAACATGCC
ATGCACATATGGATCATTCGCCAACTACGAAAACTCAAGAGCTGTGGTCC
GGCGGTCCGGCACCATGTCGAACGAAACGTTCCAAAGCAACTTTTATTTG
GATCATCCATCAACATCTATTTGGTACGATTAGAGTCCGTCATGGTGTGG
GGTGTGGCGCGGTGTCATCCAGCTTTTGAGTCTACTCTACAGCAGTGCCT
ACACTTACTTTTTGTACTGCGAGCACAAACACATTCGGTACTCTCTGTCA
GAACCCAGTGGATCTACATTACCTGTACCCATGATAAAATATGCTGTACA
GCAGTACAGCCTTAGCCTGTATCTTTGTCTTGCTGTCATCCTCACCTCGC
CTAAGTGGGTACTTCACGAACAGTAGTCGCCAAGACAAGACAACTTTACG
GCACGGCGCACAGCGCACAGCACGGCACAGCACAGCGCAGCGTCGCGCGT
AACGCAATTCTGCGAGGGGTACCAGAGGATCAGGTTTTGGAAAAACTAGG
AAACCAGCCTTCGAACTCCGCTTTGTATCATATGATAGCATGCCGCGCCT
CGAAACCGACCGTTCGTCAGTGCAACGACTTGAACGTTTGGCTCTTCCTA
AACTTGTGTGATGTACAATTTCTATCATATACATACATACACACGTGTGC
ACATGTTCAGGTGTCGAGGATCGTGGGACAACGACCCCTCGAGTTCACCC
GCCGCAAGGCTTGGATAGCGGCTCCAGTGAGATTCGGCAACGGAATCTCA
GCCGTCACGAGTCTGTGCCTGTGCGATGAAGCCAGCACCGGAGGTGAGAG
CAGACGAGGTCGAGCTATCAAGAGCCACAAAAACATACTTTCATCCCTGT
GTGCCATCATTGCCGCCATTCGGTATCAAGCATGAGTTTTCTTACATGCT
GCCTAAAATGTAATTGTAGTACAGAAGTCTCCTTCTTCGGCTCCATTGGG
AAGTGTTCTAGTGACGGTATTGGGAAACTTGCTACAGCCTCCGAATCGTC
CCTTTTTCGAAACAGATCCCGTCGCAGTCACTGCCCACATTTCTGCCCCC
CCTTGCAGCAGATAATTTTCCCGAGGAAGGGGTATGTCACTGGCCTTGAA
TATCTGAGCGATCTACAAGGTGACGTGATTACTGTATATATACGTCTGAC
TCGCGTGGTACTCTCAAATTCCTTCGGTGGCAACCGCCATCTCTAGGGCC
TTCTCTTCTTATCTCAGGGGACGAGGATGGCGGTGTATCTGTGGTGAAGG
TGGAGGGCGGGGGCGATGATTTATCCGCCTCAGGATGTTTCGCCACGCCA
GAGCTCCGGCGAGTGAGATTGCACAGCTCCTGCGTCAACACGTAAGTACA
TGATGTCATGTTGTCTTCGCTTGGCGAGTGTACTTGCTTTTTTATAGGTC
CGGTCGTAGATGCTGCCGCTGTTTTGATGTCACATCTTCGAAATCAACAG
AGTGGAAGTAGCGGGACCACTCTTGCCCCCCAAGACATGAAGTCATGCAT
GTTTTGTGTGTTGGCCCCTACAGAATGGAGCGTGTTGGTGCTTTGTTGGC
ACCACAGCTGACGCTCTGAAGCATGTTGTGACTTGGAACACATTTCGTGA
TCTTCACGCCGTCATCCAACTGGTCAATGGGTGCACGTGAACCCTCGCAG
TATCAAAGTGCTTCCTGACCAGCGGGGTTACGTGTGCGCCGGAGACGACG
GCGCCCTCAGTGCCGTGGCTAGTTTCGAGGCATCATCTGAGGAGGACCTT
CGGAGGGCCACCTTCGCCCTGACGGGACACTCAGGCTTCGTCACCGATTG
CGATACTGCGCAAAGTGGGCATGCCGTTCTCTCGAGCAGGTAGGACGCAG
TATTAGACCTGGGAAAAATGTACGGTATTGTTGAATTTTTGAAAAGTTTG
TAGCCCAGGTGTTTTCGCCGGTACGATGCTGAAGCAGGCACATGTGTTGA
CTGCAAGTATGCGTCTTTGTGACCCTTCCGTATGGGTCGTCGGTCGTTTT
GACGCTAAGATCATGACCCCACCATGGTCATCCGTGGGCCCATCTATGAC
ATGCTGTTGATTTTTTGTCGCCTAATAGTCCGCATAGACAGTGCAACGAC
TTTCGCGAACTTGTAGAACTTGGATAGACCATTTCCACACGATGTTAAAG
CAGCGCCTTGCTGGATTGTTGTATGCCCCCCGCTTACCCGGCGCCCGTTC
GCTCGTTTTGTCAGCACTGATGGAAGGATGCTTCTTTGGGACCCCGTGGC
TTCCAACACGCCGGTGACCATCATCTCTGTCGGTCGCCCGCTCAACAGCG
TCTGCTTCTCTGCTGGAGATCCCTACGCCCTTCTTTGTGCGCCTGAATTA
GGCACGGCTTGCAGCAGCAGAGGTGGTGGAGGTGGAAGTGGCAGTAGCAG
CGGCGAAAATGGCGTAGGTGGCGCAGACCTAGTTCAAATCTGGGACCTAA
GGTGCGGACCGCTATGTTTGCGCGGTGTGTTTCTGAACGTGGTCTTGGGT
CGTTGGCTGTATCGTAGGGCCAGCTCCATAGCGATCACATACCGCATTGC
TTCAGCTCTACGTATGTGCCTATTACTGCTCATCGCCAAACCCTCCTTCC
TCTTTTCCATCGGCTGTCGTGTAAGGTTTCTGAGGTGTTTCAAAGACTTT
ATTCCAGCAGCCGTTGCGACGGCGTTCGGTGAGGATCCCTCTGTGTCTGC
GCCCCACGCGGCTTCCATGCAGCCCCCACCCCCGCAATCTCCACAAATAT
GGAGTGCTTCAACATGGTCAAGTGACAGCTCGTCGTCTGGACCAGCAACT
GTTCGAAGCAGCGTCGCGCGCACTCCTTCTCAGGTCCCTTCTTGGCTAAC
GACGGCGTTAGGGTCCACTTCAGCGGTCTCTCCAGCGACACCTCTCTTGG
TACGTGCTCGGTGTCGAGGCGCAAATATCGTTTGTGGTGGTTCAAGGAAG
GTGGTGAAACCCTCGCTTTGGGGGCGCCTCTTGTGAGCCATTTGGCTAGA
GAGGGGTCGATGGGTTGACGCCAACTCCGAATAATGGGCAATGCTTTTTT
TCTCACGTGGTACACCGTCCCTGTCCCACCCCCGTCTCCGTTGACGTCCG
TACTTTCCCTGTGGTGTATACATATGCTCTGTAAAATTACTGTTGCAGAG
GAGATCCGCCTGGACGAACGATAGCAGCGATGCCGAGTCCTCAGAAAAGA
GGTGGTCTCGGGGACGAGGCAGCTTGTGGTCGTGCGGTACACCTGAGTCG
ACCGAGAGGGAGAACACCATCCCGGCTAGCAGCCCTTGGAGTGAAACTAG
ACGAGGCAGTGAGTACGCCTCGACCCCTAGTCGGAACCCCACTTCATCGG
TCAAGGAGCAAGGCCCTTCAATGCCCGCCCGGATGACGGCGCCGAGACGG
GATGGTCCTTCTGCGTCGCTTCGCGTGACATCGCTTCCGGCCTCCGGTTG
CCTGCACGAAAAGAACGGGAAAACGTGGGTACCCGGCAATTTGAAGACGT
GGCAGGCCAGCAACCGGCGAGCTCGCGCAGCCGGGGCGCGGGAACGTGCG
GGAGTGGCATGTGTCGCTTGCAGCGGCAGCACAAATACATCTGCGTTTTC
AGTCCAGGTCTCAGGGGATGGGACAAGGATCCTTGTGGCTTCACGAGACC
GCACGGTTACTCTGTTCGATGCGCAATCTCGGGAGGTTGTGTACCGCTTC
GGCCACCCGCGGCTATCCACGCGTGCCTGCCCGATATTTGTGGAAGGCGA
CCAGGTCGGTGGGGCCAGAGGGTGGGGCAGGGGCAGGGGTGGAAGTGGTG
GAGGGTATACTTTCGGCGGGATGATGGAAGGGGAAGTGCGATGTTGGAGA
GTGGGATCGCAGTTTCCAAACCGTGTATTTAAATCGGCGGTTCACCACGA
GGGTTTCGAGGTTTGCTCCTTGGCCACGAGCAGAAATGGCGGCATGTTTG
CCTCGGCTGACTCAAGCGGCATGGTTTGCGTGCAGTCAGCCACATGGGGG
CGGGAGGCACAGGACGGCAGTGGTGAAGGAGCGGGGCACCACGAGGGAAA
ATGATACGTGGTGGAAAAGACGACGCCGTTGGTAACGTAAATATCTGCGA
TAACGCAATGTTGCAAGGAGCACTGCTGTTGTAATCAGCGCCCCCTGCGC
CTGTAGGACCTTTATGTCGAGGGTGTTGTCTTGTGTGGAGTTTCAATATT
TTCAGAACACGTGAAATATGTCAAAATTGACCAATCACCATCATCAATCA
GCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig128:53987..58639+

>mRNA_P-littoralis_Contig128.15.1 ID=mRNA_P-littoralis_Contig128.15.1|Name=mRNA_P-littoralis_Contig128.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1968bp|location=Sequence derived from alignment at P-littoralis_Contig128:53987..58639+ (Pylaiella littoralis U1_48)
ATGAAAGGCATCACAACAAAGCTTCGCGAGAGGCCTGCTCACCAAGGGAG
CTTGTCGACGAAGTTCCCTTGGTCACTGCAGCCGGTGTCGAGGATCGTGG
GACAACGACCCCTCGAGTTCACCCGCCGCAAGGCTTGGATAGCGGCTCCA
GTGAGATTCGGCAACGGAATCTCAGCCGTCACGAGTCTGTGCCTGTGCGA
TGAAGCCAGCACCGGAGGGCCTTCTCTTCTTATCTCAGGGGACGAGGATG
GCGGTGTATCTGTGGTGAAGGTGGAGGGCGGGGGCGATGATTTATCCGCC
TCAGGATGTTTCGCCACGCCAGAGCTCCGGCGAGTGAGATTGCACAGCTC
CTGCGTCAACACTATCAAAGTGCTTCCTGACCAGCGGGGTTACGTGTGCG
CCGGAGACGACGGCGCCCTCAGTGCCGTGGCTAGTTTCGAGGCATCATCT
GAGGAGGACCTTCGGAGGGCCACCTTCGCCCTGACGGGACACTCAGGCTT
CGTCACCGATTGCGATACTGCGCAAAGTGGGCATGCCGTTCTCTCGAGCA
GCACTGATGGAAGGATGCTTCTTTGGGACCCCGTGGCTTCCAACACGCCG
GTGACCATCATCTCTGTCGGTCGCCCGCTCAACAGCGTCTGCTTCTCTGC
TGGAGATCCCTACGCCCTTCTTTGTGCGCCTGAATTAGGCACGGCTTGCA
GCAGCAGAGGTGGTGGAGGTGGAAGTGGCAGTAGCAGCGGCGAAAATGGC
GTAGGTGGCGCAGACCTAGTTCAAATCTGGGACCTAAGGTTTCTGAGGTG
TTTCAAAGACTTTATTCCAGCAGCCGTTGCGACGGCGTTCGGTGAGGATC
CCTCTGTGTCTGCGCCCCACGCGGCTTCCATGCAGCCCCCACCCCCGCAA
TCTCCACAAATATGGAGTGCTTCAACATGGTCAAGTGACAGCTCGTCGTC
TGGACCAGCAACTGTTCGAAGCAGCGTCGCGCGCACTCCTTCTCAGGTCC
CTTCTTGGCTAACGACGGCGTTAGGGTCCACTTCAGCGGTCTCTCCAGCG
ACACCTCTCTTGAGGAGATCCGCCTGGACGAACGATAGCAGCGATGCCGA
GTCCTCAGAAAAGAGGTGGTCTCGGGGACGAGGCAGCTTGTGGTCGTGCG
GTACACCTGAGTCGACCGAGAGGGAGAACACCATCCCGGCTAGCAGCCCT
TGGAGTGAAACTAGACGAGGCAGTGAGTACGCCTCGACCCCTAGTCGGAA
CCCCACTTCATCGGTCAAGGAGCAAGGCCCTTCAATGCCCGCCCGGATGA
CGGCGCCGAGACGGGATGGTCCTTCTGCGTCGCTTCGCGTGACATCGCTT
CCGGCCTCCGGTTGCCTGCACGAAAAGAACGGGAAAACGTGGGTACCCGG
CAATTTGAAGACGTGGCAGGCCAGCAACCGGCGAGCTCGCGCAGCCGGGG
CGCGGGAACGTGCGGGAGTGGCATGTGTCGCTTGCAGCGGCAGCACAAAT
ACATCTGCGTTTTCAGTCCAGGTCTCAGGGGATGGGACAAGGATCCTTGT
GGCTTCACGAGACCGCACGGTTACTCTGTTCGATGCGCAATCTCGGGAGG
TTGTGTACCGCTTCGGCCACCCGCGGCTATCCACGCGTGCCTGCCCGATA
TTTGTGGAAGGCGACCAGGTCGGTGGGGCCAGAGGGTGGGGCAGGGGCAG
GGGTGGAAGTGGTGGAGGGTATACTTTCGGCGGGATGATGGAAGGGGAAG
TGCGATGTTGGAGAGTGGGATCGCAGTTTCCAAACCGTGTATTTAAATCG
GCGGTTCACCACGAGGGTTTCGAGGTTTGCTCCTTGGCCACGAGCAGAAA
TGGCGGCATGTTTGCCTCGGCTGACTCAAGCGGCATGGTTTGCGTGCAGT
CAGCCACATGGGGGCGGGAGGCACAGGACGGCAGTGGTGAAGGAGCGGGG
CACCACGAGGGAAAATGA
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