mRNA_P-littoralis_Contig1276.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1276.9.1
Unique NamemRNA_P-littoralis_Contig1276.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1276.9.1 vs. uniprot
Match: A0A482SNF4_9ARCH (Fatty acid hydroxylase family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNF4_9ARCH)

HSP 1 Score: 211 bits (536), Expect = 2.550e-59
Identity = 100/199 (50.25%), Postives = 135/199 (67.84%), Query Frame = 1 
Query:  403 WLPLFCRDKNGRHPLHGAFATTNILMASTFAGTVTHFIVAGRTRVSW-DTEVGFSWPRTVAGLVLSLAWQSVLEYYWHRLMHLRPVYTRMHKYHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPFLFVVPVSSFLLYMVVCGVCGVLDHSGVALSMPGLYDTADHDRHHSRFEVNYAFPFPFMDVLHGTYEGNFLGKRY 996
            W   F   K  R PLH      N+ +AS FA   T   V    R+++ D +V    P     ++L+  ++S+ EYYWHRLMHL+  Y   HK HH YK+PEPFDD+ IHP+EAFGYY  LY+PPFLF +   SF+ YMV+ G+ GV+DHSG+  S+P +Y+T DHD HH++FEVNY+FPFP++D+LHGT+EG FLG++Y
Sbjct:   54 WGWSFFSSKPHRAPLHSLITCVNLFIASCFALMATECSVRRVNRMTYEDFDVNLL-PTIFCQVLLACTYESLAEYYWHRLMHLKFFYIAFHKMHHQYKAPEPFDDMYIHPVEAFGYYCILYAPPFLFTMHYVSFIAYMVIMGIFGVMDHSGIKFSIPAIYNTVDHDSHHAKFEVNYSFPFPYLDILHGTFEGEFLGRQY 251
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BLAST of mRNA_P-littoralis_Contig1276.9.1 vs. uniprot
Match: L1JX35_GUITC (Sterol desaturase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JX35_GUITC)

HSP 1 Score: 210 bits (535), Expect = 3.330e-59
Identity = 101/208 (48.56%), Postives = 130/208 (62.50%), Query Frame = 1 
Query:  403 WLPLFCR---DKNGRHPLHGAFATTNILMASTFAGTVTHFIVAGRTRVSWDTEVGFSWPRTVAGLVLSLAWQSVLEYYWHRLMHLRPVYTRMHKYHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPFLFVVPVSSFLLYMVVCGVCGVLDHSGVALSMPGLYDTADHDRHHSRFEVNYAFPFPFMDVLHGTYEGNFLGKRYAASPRRL 1017
            W P   R    + G+   H      N++ A   AG V   IV G TR+ +D +     P  V    L++ WQSVLEYYWHRLMHL   Y   HK HH YKSP+PFDD+ IHP+EA GYY  LYSPPF+F + V  F+LYM + GVCG+LDHSG+     G+Y+T DHD+HH  F+ N+AFPF +MD+LHGT+ G+ +G  Y  S  +L
Sbjct:   55 WSPFLGRWFGRREGKEEYHDFVCAMNVITAGCSAGFVVRSIVRGSTRLLFDWKAAGRLPGVVGTFCLAVGWQSVLEYYWHRLMHLPFFYKHFHKMHHSYKSPQPFDDMYIHPVEAVGYYCILYSPPFVFPLHVYGFVLYMAIMGVCGILDHSGIKWGFLGIYNTEDHDKHHEHFDCNFAFPFVWMDILHGTFAGDHMGIHYPLSSAKL 262
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BLAST of mRNA_P-littoralis_Contig1276.9.1 vs. uniprot
Match: A0A7S1GXN0_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GXN0_HEMAN)

HSP 1 Score: 210 bits (535), Expect = 1.250e-58
Identity = 121/285 (42.46%), Postives = 151/285 (52.98%), Query Frame = 1 
Query:  286 GDRMLSPAFFEGFLFMAIGYVLFRYEMQINLRKEETRR---W-----------------WLPLFC-----RDKNGRHPL----------HGAFATTNILMASTFAGTVTHFIVAGRTRVSWDTEVGFSWPRTVAGLVLSLAW-------QSVLEYYWHRLMHLRPVYTRMHKYHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPFLFVVPVSSFLLYMVVCGVCGVLDHSGVALSMPGLYDTADHDRHHSRFEVNYAFPFPFMDVLHGTYEGNFLGKRYAASPRR 1014
            G  M+S  F  GF F+  GY+   Y +Q      +  R   W                 W+PL        D +   P           H   ++ N+ MAS+ AGTV H    GRTR+ +  +          G++  L W        +V EYYWHRLMH R  Y+R+HK HHFYKSPEPFDDL IHPLEA GYY  LYSPPF   +    F  YM + G+CGVLDHSGV + +PGLY   DHD HHS+FEVNYAFP P MD+LHGT+ G  +G R+   PR+
Sbjct:   23 GAMMISRPFAAGFSFILCGYLSMSYSLQYWFYARQQARIKDWKVQPERQGGSGPVAYSIWIPLISPVPVNTDTHKSSPDSPPSKVRARDHWVLSSINLAMASSVAGTVAHLCCRGRTRMVFTLQ-------DAGGVIGLLGWTGAAFALHNVAEYYWHRLMHHRFFYSRLHKLHHFYKSPEPFDDLYIHPLEAAGYYAILYSPPFALPIHALGFGFYMAIMGLCGVLDHSGVRVRVPGLYAAEDHDLHHSKFEVNYAFPHPLMDILHGTFSGTCMGFRFPYPPRK 300
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BLAST of mRNA_P-littoralis_Contig1276.9.1 vs. uniprot
Match: A0A7S3D0N0_9EUKA (Hypothetical protein n=4 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D0N0_9EUKA)

HSP 1 Score: 201 bits (510), Expect = 1.340e-55
Identity = 94/197 (47.72%), Postives = 127/197 (64.47%), Query Frame = 1 
Query:  397 RWWLPLFCRDKNGRHPLHGAFATTNILMASTFAGTVTHFIVAGRTRVSWDTEVGFSWPRTVAGLVLSLAWQSVLEYYWHRLMHLRPVYTRMHKYHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPFLFVVPVSSFLLYMVVCGVCGVLDHSGVALSMPGLYDTADHDRHHSRFEVNYAFPFPFMDVLHGTYEGNFLG 987
            RWWLP+F  +K  R P +  FAT N+L+    A T    +  G + + ++  V   W  ++    L +    +LEYYWHRLMHLR  Y   HKYHH++KSPEPFDD+ IHPLEA GYY+ +YS PFL  +  ++F  YM+V GV GV+DHSG+    P  Y + DHD HH ++EVNY+FPF +MD+LHGT+ G + G
Sbjct:   58 RWWLPIFS-NKEKRPPHYAIFATMNVLLQVACATTAIELVCRGYSSMRFE-PVENEWKMSIVSFFLGIVLHMMLEYYWHRLMHLRWFYCTFHKYHHYFKSPEPFDDMYIHPLEALGYYIIMYSTPFLIPMHWTAFAGYMIVVGVAGVMDHSGIKFHFPLFYASEDHDLHHEKYEVNYSFPFMWMDILHGTFRGTYAG 252
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BLAST of mRNA_P-littoralis_Contig1276.9.1 vs. uniprot
Match: C1FEX9_MICCC (C-4 sterol methyl oxidase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FEX9_MICCC)

HSP 1 Score: 192 bits (488), Expect = 2.580e-52
Identity = 103/209 (49.28%), Postives = 127/209 (60.77%), Query Frame = 1 
Query:  400 WWLPLF-----CRDKNGRHPLHGAFATTNILMASTFAGTVTHFIVAG---------RTRVSWDTEVGFSWPRTVAGLVLSLAWQSVLEYYWHRLMHLRPVYTRMHKYHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPFLFV-VPVSSFLLYMVVCGVCGVLDHSGVALSMP-GLYDTADHDRHHSRFEVNYAFPFPFMDVLHGTYEGN 978
            W LP          K+GRHP H  +AT N++++S FAG      +AG          T V+       S    + G VL++ WQSVLEYYWHR MHL  VY  +HK+HH YKSP+P+DDL IHP E+FGY L LYSP F    +PV +FLLYM + G CGVLDH GV +  P G YDT  HD HH  F+ N+AFPFP MD LHGT+  +
Sbjct:   71 WGLPALDLVRASPSKDGRHPSHACYATCNLVVSSLFAGATCEAYLAGDGKLFGLFRSTLVNASAYSVASAYSVLVGAVLAVTWQSVLEYYWHRAMHLPRVYRLLHKFHHHYKSPQPWDDLFIHPAESFGYCLILYSPAFCVPSLPVQAFLLYMTIMGACGVLDHCGVKMRWPFGAYDTQFHDVHHRSFDANFAFPFPTMDRLHGTHRAS 279
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BLAST of mRNA_P-littoralis_Contig1276.9.1 vs. uniprot
Match: A0A061RXV7_9CHLO (C-4 sterol methyl oxidase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RXV7_9CHLO)

HSP 1 Score: 189 bits (480), Expect = 2.620e-51
Identity = 103/199 (51.76%), Postives = 124/199 (62.31%), Query Frame = 1 
Query:  400 WWLP---LF-CRDKNGRHPLHGAFATTNILMASTFAGTVTHFIVAGRTRVSW---DTEVGFSWPRTVAGLVLSLAWQSVLEYYWHRLMHLRPVYTRMHKYHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPF--LFVVPVSSFLLYMVVCGVCGVLDHSGVALSMPGLYDTADHDRHHSRFEVNYAFPFPFMDVLHGTY 969
            WWLP   LF  +    RHPLHG + T N+L AS+F   VT   + G   +     DT +   W   +  L  +LA QSVL YYWHRLMH RP Y  +HK HHFYK+P PFDDL IHP+EAFGYY  LY  P   L  +P+  + LY+ + GV GVLDHSG+ LS+P  Y  +DHD HH  F VNYAFPF  MD+ HGTY
Sbjct:   60 WWLPAVNLFGXKPDYSRHPLHGLYCTINLLTASSFLAFVTEAHIRGWNNIKLPEPDTLIYLEW---LPFLRATLA-QSVLVYYWHRLMHWRPCYKALHKLHHFYKAPRPFDDLFIHPVEAFGYYTLLYLFPAHCLGRMPLGDYALYLTIHGVFGVLDHSGIYLSVPPFYHVSDHDAHHRHFNVNYAFPFVLMDIFHGTY 254
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BLAST of mRNA_P-littoralis_Contig1276.9.1 vs. uniprot
Match: W7TYR2_9STRA (C-4 sterol methyl oxidase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYR2_9STRA)

HSP 1 Score: 189 bits (479), Expect = 8.870e-51
Identity = 101/197 (51.27%), Postives = 122/197 (61.93%), Query Frame = 1 
Query:  421 RDKNGRHPLHGAFATTNILMASTFA-----GTVT---------HFIVAGRTRVSWDTEVGFSWPRTVAGLVLSLAWQSVLEYYWHRLMHLRPVYTRMHKYHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPFLFVVPVSSFLLYMVVCGVCGVLDHSGVALSMPGLYDTADHDRHHSRFEVNYAFPFPFMDVLHGTY 969
            R   GR P H  FAT N+++AS FA     GTV          H  V G   V W   +G SW      +V SL WQS  EYYWHRLMH  PVY R HK+HHFYK+P PFDD+ I PLEA GYY  LYSP  +  + V SF +Y+ + G+CG+LDHSG+ + +P +YDT  HD HHS    N+ FPFPF+DVLHGTY
Sbjct:  106 RGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWL-LGESWL-----VVASLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTY 296
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BLAST of mRNA_P-littoralis_Contig1276.9.1 vs. uniprot
Match: A0A830HM61_9CHLO (Fatty acid hydroxylase domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HM61_9CHLO)

HSP 1 Score: 180 bits (457), Expect = 4.600e-48
Identity = 105/240 (43.75%), Postives = 134/240 (55.83%), Query Frame = 1 
Query:  322 FLFMAI-GYVL------FRYEMQ----INLRKEETRRWWLPLFC-------------RDKNGRHPLHGAFATTNILMASTFAGTVTHFIVAGRTRVSWDTEVGFSWPRTVAGLVLSLAWQSVLEYYWHRLMHLRPVYTRMHKYHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPFLFV---VPVSSFLLYMVVCGVCGVLDHSGVA-LSMPG-LYDTADHDRHHSRFEVNYAFPFPFMDV 954
            F F+ + GYVL      +RY  Q    + +  + +   W PL               R    +HP H  +AT N   +S FAGT+ +   A  T     T     +         ++AWQSV+EYYWHRLMH   +Y   HK HH Y+ P PFDDL IHP+EA GYYL LYSP FL +   +P++SF+ YM V G+CGV DHSGVA L +PG +Y+T DH  HHS F VNYAFPFP MD+
Sbjct:   30 FFFLQLSGYVLISSWLQYRYYFQDLSGVRVHHKRSFVSWWPLLSLLFPSRDLPHISLRPHGSKHPRHNLYATINSFTSSAFAGTIAYAFHANLTWCRITTTARDDYTDYFKAFATAVAWQSVIEYYWHRLMHWGWIYKAFHKLHHTYQHPVPFDDLFIHPVEAMGYYLILYSPAFLPILPKIPLASFVTYMAVMGLCGVFDHSGVASLRIPGGIYETTDHANHHSPFVVNYAFPFPLMDI 269
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BLAST of mRNA_P-littoralis_Contig1276.9.1 vs. uniprot
Match: A0A485KEW3_9STRA (Aste57867_4084 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KEW3_9STRA)

HSP 1 Score: 174 bits (441), Expect = 7.190e-46
Identity = 83/190 (43.68%), Postives = 123/190 (64.74%), Query Frame = 1 
Query:  436 RHPLHGAFATTNILMASTFAGTVTHFIVAGRTRVSWDTEVGFSWPRTVAGLVLSLAWQSVLEYYWHRLMHLRPVYTRMHKYHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPFLFVVPVSSFLLYMVVCGVCGVLDHSGVALSMPGLYDTADHDRHHSRFEVNYAFPFPFMDVLHGTYEGNFLGKRYAAS 1005
            R P H    + N++MA+TFA   T   V G +R+ +D     S    V+  VL++   +++EYYWHRL+H+R +Y R+HK HH YK P+PFDD+ +HP E   Y+  LY PPF+  + V +F+LYMVV G+ GVLDHSG++  +P +Y   DH  HH++  VNY FPF ++D++HGT+ G F G  + ++
Sbjct:   63 RSPHHMTIVSFNLIMAATFAMLSTELHVRGHSRMCFDDSSPPS-SLVVSQAVLAMLGSNLVEYYWHRLLHIRALYVRVHKVHHHYKRPQPFDDMYMHPFEGAIYFCILYGPPFVLPMNVHAFILYMVVMGLFGVLDHSGLSFHIPLVYKAQDHAVHHAKVNVNYGFPFVYLDLVHGTFHGEFAGVTFGST 251
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BLAST of mRNA_P-littoralis_Contig1276.9.1 vs. uniprot
Match: A0A5A8E491_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E491_CAFRO)

HSP 1 Score: 174 bits (441), Expect = 1.160e-45
Identity = 94/203 (46.31%), Postives = 117/203 (57.64%), Query Frame = 1 
Query:  403 WLPLFCRDKNGRHPLHGAFATTNILMASTFAGTVTHFIVAGRTRV--SWDTEVGFSWPRTVAGLVLSLAWQSVLEYYWHRLMHLRPVYTRMHKYHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPFLFVVPVSSFLLYMVVCGVCGVLDHSGVALSMP-GLYDTADHDRHHSRFEVNYAFPFPFMDVLHGTYEGNFLGKRYAA 1002
            W    CR   GRHP   A A  N+     FA       + G T +  +W  E G SW      L  + AW++V E+ WHR+MH   +Y  +H  HHF KSPEPFDD++IHP+EA GYY+ LYSP FLF + VS FL YM + GV GVLDH G  L +P  LYDT  HD HH   +VN+ FP   +DVL GT+ G   G+R  A
Sbjct:   78 WAAQHCR--RGRHPDAPALALLNLAQICLFAAATCDAALLGHTPMLMAWGQEGG-SWAAWGGWLAAAYAWENVAEWVWHRVMHFPWLYRNVHHLHHFNKSPEPFDDMLIHPVEAVGYYIILYSPAFLFPMHVSVFLAYMAIMGVTGVLDHCGAVLGLPLSLYDTRHHDHHHELVDVNFGFPSAAIDVLCGTFHGECCGRRILA 277
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1276.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482SNF4_9ARCH2.550e-5950.25Fatty acid hydroxylase family protein n=1 Tax=arch... [more]
L1JX35_GUITC3.330e-5948.56Sterol desaturase n=2 Tax=Guillardia theta TaxID=5... [more]
A0A7S1GXN0_HEMAN1.250e-5842.46Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S3D0N0_9EUKA1.340e-5547.72Hypothetical protein n=4 Tax=Palpitomonas bilix Ta... [more]
C1FEX9_MICCC2.580e-5249.28C-4 sterol methyl oxidase n=1 Tax=Micromonas commo... [more]
A0A061RXV7_9CHLO2.620e-5151.76C-4 sterol methyl oxidase n=2 Tax=Tetraselmis sp. ... [more]
W7TYR2_9STRA8.870e-5151.27C-4 sterol methyl oxidase n=1 Tax=Nannochloropsis ... [more]
A0A830HM61_9CHLO4.600e-4843.75Fatty acid hydroxylase domain-containing protein n... [more]
A0A485KEW3_9STRA7.190e-4643.68Aste57867_4084 protein n=1 Tax=Aphanomyces stellat... [more]
A0A5A8E491_CAFRO1.160e-4546.31Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1276contigP-littoralis_Contig1276:26259..35861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog55529.EKX53146
PFAMsFA_hydroxylase
Model size2190
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.48e-65
EggNOG OGsCOG3000@1|root,KOG0873@2759|Eukaryota
DescriptionC-4 methylsterol oxidase activity
Cds size729
COG categoryI
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1276.9.1prot_P-littoralis_Contig1276.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1276 26986..34694 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789567.0068564-UTR-P-littoralis_Contig1276:26258..265171680789567.0068564-UTR-P-littoralis_Contig1276:26258..26517Pylaiella littoralis U1_48UTRP-littoralis_Contig1276 26259..26517 +
1680789567.0210056-UTR-P-littoralis_Contig1276:26950..269851680789567.0210056-UTR-P-littoralis_Contig1276:26950..26985Pylaiella littoralis U1_48UTRP-littoralis_Contig1276 26951..26985 +
1680789567.1075835-UTR-P-littoralis_Contig1276:34694..358611680789567.1075835-UTR-P-littoralis_Contig1276:34694..35861Pylaiella littoralis U1_48UTRP-littoralis_Contig1276 34695..35861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789567.037878-CDS-P-littoralis_Contig1276:26985..270631680789567.037878-CDS-P-littoralis_Contig1276:26985..27063Pylaiella littoralis U1_48CDSP-littoralis_Contig1276 26986..27063 +
1680789567.0495093-CDS-P-littoralis_Contig1276:30825..309541680789567.0495093-CDS-P-littoralis_Contig1276:30825..30954Pylaiella littoralis U1_48CDSP-littoralis_Contig1276 30826..30954 +
1680789567.061735-CDS-P-littoralis_Contig1276:31852..319861680789567.061735-CDS-P-littoralis_Contig1276:31852..31986Pylaiella littoralis U1_48CDSP-littoralis_Contig1276 31853..31986 +
1680789567.0755844-CDS-P-littoralis_Contig1276:32281..323631680789567.0755844-CDS-P-littoralis_Contig1276:32281..32363Pylaiella littoralis U1_48CDSP-littoralis_Contig1276 32282..32363 +
1680789567.0857732-CDS-P-littoralis_Contig1276:32962..331341680789567.0857732-CDS-P-littoralis_Contig1276:32962..33134Pylaiella littoralis U1_48CDSP-littoralis_Contig1276 32963..33134 +
1680789567.0968583-CDS-P-littoralis_Contig1276:34560..346941680789567.0968583-CDS-P-littoralis_Contig1276:34560..34694Pylaiella littoralis U1_48CDSP-littoralis_Contig1276 34561..34694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1276.9.1

>prot_P-littoralis_Contig1276.9.1 ID=prot_P-littoralis_Contig1276.9.1|Name=mRNA_P-littoralis_Contig1276.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=243bp
MLSPAFFEGFLFMAIGYVLFRYEMQINLRKEETRRWWLPLFCRDKNGRHP
LHGAFATTNILMASTFAGTVTHFIVAGRTRVSWDTEVGFSWPRTVAGLVL
SLAWQSVLEYYWHRLMHLRPVYTRMHKYHHFYKSPEPFDDLMIHPLEAFG
YYLQLYSPPFLFVVPVSSFLLYMVVCGVCGVLDHSGVALSMPGLYDTADH
DRHHSRFEVNYAFPFPFMDVLHGTYEGNFLGKRYAASPRRLR*
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mRNA from alignment at P-littoralis_Contig1276:26259..35861+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1276.9.1 ID=mRNA_P-littoralis_Contig1276.9.1|Name=mRNA_P-littoralis_Contig1276.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9603bp|location=Sequence derived from alignment at P-littoralis_Contig1276:26259..35861+ (Pylaiella littoralis U1_48)
CGAATCTGTGTCGACGACATCTCTAGAAATGTACCGCTGCTGTATGCAGG
TGTTCTTCCATCCCACCTCTGAGCATTCTATTGACGCATCATCGTGATCG
CTGTGGTCTGTGATGCTTAGCGTGAGCCCTCCGGGACAAGTAAACAACGG
GGCTTTCTGACTGAATAGTTGAAGCTCGTGGGCAAGCTGACATCATTGTT
TCCGCCTTCCTCCACCACGGCTTCACCACCGCCGCTCCTGCGTGCATTAA
TCACCACTGGTGTGTCACGAGAGCGTGTGGCATTTTAGTTCACGTGTGGT
GTTTTTCGTTTTTAGTACATACGACCGCAGGATAGATCAGCAGTGCCTAA
AGTAGCCCCACGTTCTGCCGCAACAGGCAACAGCTCCTGATGTTTCTTTA
TATGAAACCTGTATGAAGCACTACTGCTGTAAAGACTTCAATGTTCTCGT
CTGCTCAACAAGGGTCTGAGATAAGCAACGAACACAGAGGTTAAATGTCA
TACGAAGTACATCTACTTGTGCTCCTACAACTCATCAGATAACACACCGA
TGCAGCTGAAGGCATCAAGCTGTTTACTACCTTGAAGTTTCTCGCAAACT
TCGAAAACTTCTCTCCTTCTAAAACATAGATCAGCACATCAGTTTCTGCC
GCAACAACCGGCGAACTCAAGCTTCTCTCACTGCTGCTACAGGAGGAGCA
GCCCCGAGCCCGCCGAGTGGAGATAGGATGTTGTCTCCAGCGTTCTTCGA
AGGATTCCTGTTCATGGCTATCGGATACGTGCTCTTCAGGTACGAGATGC
AAATCGCTCTGCTTTGTCAAGCTATTAGATTCTCCCGCTGTCGGCCGTTA
CCGTTGTGTTTGTTGTTTGTTGTTGTTGATTCTCACATTAGCTCACTACC
GCCGCAGTCTAGCCCTTGGTCACAAACCAGGCACATATCGTGCTAGGAGG
AAAAAATAAAAATAAAATAAATGGACTATGATCACCCACAGTCAAATCAG
ATATGGTACCGTTGGGGTACCATCTGTGGTGGCCAGAGTACCATACAAAA
TACAGAAAAAAAATACTCGGAGTAACAGGTTCGAAAGAAGAAACAAAAAT
TGGAAACAGTACGACAAACAAAAAATATCCAAGACAAACCTCAACCATAA
CCATATACTTCGAAGTACTTCGTACATCGAACCAGGGCCCAGGGCCATGA
CAGACCAAGGCAAACGCAAACCAGGGCAATGCTCCAGTAACTATATGATC
AATAGACGAAAGACAAAGAAAAATAAAAACGAAGAAGATGCAGGGAGGGC
ACAAAGACTGAGGGAGTGCACTCGTACACAAACACAACAGGCCGCCAAAC
AAAGAGGAAGCAGGGGAACGAAAAGGGAAAATAAAAAAAGAGGCAAAGAG
GAATAAAATACATACATGGAGAGTGCAGAGGGAAGACCGGAAGTACCGGA
AGTCGGGGGGGGGGGGGGGTGATAGAAATAAAATAAAAGGCATGCAATCA
ATCGCAAACATGTCTTGCCACGAGGTCTGCCTGTTCACGCTTGCTCTCCT
CAGTTGCACTTATGCCTACTGCTACTGGCACCATCGTACTCAGTCGTTTC
TGCCCCACATCTTTGGCAGCAGCTACACCACCATTCCGCCCTACAGGTTT
TCCACTCCGGCCACCCCGTAGCTTGGCTTTGGGCTGCTTCTTCTTGTGCT
GTGCAACTCCAACCCCACTACCCCGCTGCCCTTGTGCCCCCCCGTACCCC
TTCTCTCGATTGTCCCCGCCATCCGTTCTCCCTCTTTTGGTCAAGGCCTG
CCCCTCAGCCGCGTCCCTCTCCCGTTTCCGTCGACGTGTCTCTGATAAGT
CTCCCTCTTTCTTGAGCCACTCGTCCGTGAACCGCTGCGCACCCTCGTCG
ATCCTGTCGTACCACTCGTCAGCTCTCTTGGCACTTGCCTCCCACCCCTC
TTTTTTGTCGACCACGATGTCGAACGCTTCGAGGTCCTCCTGCATTCGCC
TCAGCCAGTCAAACTCTTGCCCCCCCAGATACCTCGCTCCCCCCTGCAAT
TCTCCCGAAAGAGCAATTTTCGGGAGTCTCTCGTCTCTCATGCGCGCAAC
GAATCCTGCGAAGCACAGTCGCCGCTTGCGCACGGTGGCCTCAATGCTCT
CGTCGCAACCCGTGGTGATCAGGGCTTTGGCGTAGGAGAGAGGTCGGTCT
GTTCTCTCCCTCTTTTTCCATCCGATGCAGCGAAGGAGGAAAAAGTGGTG
GGCTGGCCGAAGCTTGCGGTACTCCGCTGGCTTCAGATTCCATGTGACAC
CCGTAGAGTAGGGTCCACGACTTCAGCTTGGAGGAGTCGTACTTTTAATC
GAAGAGGGGCCCCCGGGCGGTCGTACATTGCCTGACTGTTGCGCCGGAAG
CAGGCGTGCGCTCGCTGCACTCGGAGGTTAATCTCGCCCTCAATGCTACC
GTCCTCACAAATCTTACCCCCGAGATACACAAAGTCTTTCTTCTGCTTGA
AGACCATCCCGGCAGCGTCGATCGTGAACGAACACGCCTCCATCCCTTTC
GCGAGCATAAACATGGTCTCCGTCTTGGGTTCTGACACCAACAGCCCAAA
CCGCCCGGCCACACGTACGATGATCGACATCATCTTCTCAAGGCTCCCAG
GTGATTGAGATACAATACAGGCGTCGTCGGCGTAGAGCGTACTCCAGATG
GACTTCACTGCCTCCACCAGTCGGGCGTTCCTCCCCTTCCCCTTCGTCAC
CTTCCTCTTGACCTTGGCCATGTCCGCCATCACCTCCGCGTCCTTGCTAA
TCTCAGCAAAGGCCACCATGAGCATCGCAGCAAATAAAAGGTTGAACAGC
AGGGGTGCCAGATTGCATCCCTGTCGGAGTCCCTGCCCCACATCAAACCA
GTCGGAGCACCTCCCGTCGTCCATCCGTACGCATGCTCTCATTCCGTCGT
GGAATTGGCGAATGCCCGCAAGTATCTTGGGGGGGCACTCCGAGCCGCTT
GAGCACCGACCACAGTAGTTCCCGGTCTACGGAGTCGTAAGCTTTCGTGT
GCATGCGGTTGGTGATCAAAAATCGAAAATCGTCAAAAGGCTGACACAGG
CGGTAGAATTATTTTTCACGTGCGCATGGATGAAATTGGGAATGCTGTGC
CGTTTTTTTTCCGTGTCGCACGCAGGCGTGCAGGTTTGACGGACAACCCA
TTCATGAAATGACTGCTTTTGAAACACGGCAAAAGGAGCCACCCGACAGT
CACACACCGGGCGACAATCACACACACACCGGGTACCTTACGCACAACCA
GGAGAAAGGCATTGATAGTCTTCTTCCAATCTCCCCCTTGAAAATCAAGG
TAATTTTACCACCATACCAAAATCCAAGTCAAATTAGCTTATTTTGATAA
GGCTCGAACGAGGTTTCCCGCCGTGTGAGGTACGAAGCACACCCTTTCAT
GCGGTTTCGGTAGAGGACACTAAGCAGCAGCGACGTGTGTCTTTACATGC
TCATATCTGCTGCTGGGGCTGAGATATCGAGAGCCCCAGCAGTGGCTCAA
AAAGTCCGCAAACTGGACCGAAACCAAAAATAGTACAGACTAAGTGATCT
ACTCGCCGCCACTGCTGTCCTCGCCTCCATAAACCTCAAACTCCCAAGCT
TACGCCGTTCGCTACCTCGGATGATGCGCAGTTATGGAGATTCATGCTCA
TGCGGGCGAGTACAACCACATCAAACGTTTGGTGTCGGTTTGCATTGCGG
AATTTTTCACCCGCTGTGGAGTTTTTGAGCCACTGCTGCGGCCCTCGATA
CCTCCTCCACAGCAGAAGATCTGAGCATGCCAACACACACGTCGCTGCTG
CAGAGTGCTCTCCACCGGTATCGCCCGAAAGGTTGCGCCTCTCACTTGGC
GGGAAGGTGGATTTCATCTTTTTGGGCCCATGTTTTCTTGGTTTGGTGTG
AAAAATTTCACCGCCCTTGTCCATCCACCCTTTGGGTAAGAAAACTTACA
TAGATCAATTGATCATGTTCAATCTTCCGATGTGCTGATTCCCGTTGCTC
TGTTTCCTCCTCTGTTCCTGATTTACCTCATCCGCTCACTGCCTTGTATT
CTCTCCACGTACCGTCAGCTCTGCCTTGCAGATCGTATTCTACCGAAGAC
GCGCCGCCAACCCTGAACAGTGGAAAATTCAATCGGAGAGAGCCCACGTG
AGTCTCCCCGCTCAATAAATCTGCTGCATTATTTTCAACCATCATGCCGC
GACTAAAGTGGAAGTGAATCGTGGGTTGTTTTGGGAGCTTCAGATACTTC
CAAGCGTTTCAAAACTTGGTGTGGGGCATCAAGCCGAACTTGTCTGTGGC
GATGAAGCAGGGCGTCAAATCACTCTCAGACCAACCGAGCGTGACGTGAT
GCCACATCAAGCTGGGCAGTGATGTATTGAACATTGCCCTCTCTGACTGT
TTCTGTCTTGCCTGTATGTCTGCGCCTCTGCCTCCCTCTGTCTGTCTGTC
TGTCTGTTTGTTTGCCTGTATGCCTGCCTGTCTCCCCTTCCTCTCTTGCA
ACGAACCGTTTTCACAGAACCTGCGGAAGGAAGAGACGCGGCGGTGGTGG
CTCCCCCTCTTCTGTCGCGACAAAAACGGCCGACATCCTCTACATGGCGC
GTTTGCAACGACCAACATCTTGATGGCGAGCACGTTCGCAGGGACGGTGA
GCCTCGTTGGCGTTGCCACAGGTTGGACCGGCCTCACGGTCTGGTCTGCA
CACGCCCCGCATGCAGTTTTACCGACGGAACACTCAGGAATATGGACTAC
TGTACGCTTTCACTCTCCTGCTTGAGTGCACTCTGTTGTGCCTATGATAA
CTATGGTATTTGTGTATATGATACGAGATTTCAAAGCTATAGAAGCCGCA
CGTTAGCAACGACAAACGCCGCACAAAATAAAAAAAGTGAGGAAGAGAGG
GGCGGGGGGGGGGGGGGCAAAATACCCTCAGGCATGTATACCCTGTACAA
ATCGTCGTTGCTTGATTGCGCGAAGGCGTGGGTCCATGCAACCAAGCTCT
TCAAAAGCGAGGGACGGATGCAAGCGCTGCAGCCTCCTGGCAACGTTCGT
GGACGAAAGGGCAGGGAATAACAAATGGGCACCCAGAAAAGTGCCCGAAA
GGGGCCCGCACTGCAGCCTCCAGAGTGCCCGTTTGTTATTCTCTGCCCTT
TCGTCCACGAACGTTGCCAGGAGGCTGCAGCGCTTGCATCCGTCCCTCGC
TTTCGTAGAGCTTGGTTGCATGGACCCACGCCTCCGTGCAGTCAAAGGTG
TGACAGCAACGACGACTTGTACGGGGTATACATGCGTGAGGGTGTTTTGT
CCGCCGCTTGTTCTTTGCCCTACCCCCCCCCCCACGTGACTCGAGGTGTT
CAAGTTGGACGCGTCGAATTCAAGCACGTTATGTACTCCGGGTACTCCTC
AAACACACTCCGCTATGTACCGCATGATACAAGTATATTACTTTACTTTT
TTGTGCTGAAGCACAGGCACGTCTCTTGACAGCCAGACGATTTTTTTATT
CCCAGTCCCCTCCTGTGGATTATTTTAACCCGTGGATCTATCAGGTGACG
CATTTTATCGTTGCTGGACGAACTAGAGTATCCTGGGACACGGAAGTCGG
GTTCTCCTGGCCTCGCACGGTGGCGGGCCTGGTGCTATCTCTCGCATGGC
AGAGCGTTTTGGAGTACTACTGGCATAGGTTAGTTTTTTCCTGCTGTGAG
GATGTTAACGATATTTCAACAACACCAGCGCAGACTTCCTGGCCTGTGTG
CTCCATCCCAGCTTGCTGGGGAGGTGGGAACTCATGTTGCGGTCGCTGCA
GACATTCTTGAGCCCGATTATGAGTACACACATCCCACCTGACGTGACGT
AGACTTTACTTTTGCTTGTTTGTCGCCCCCCCTAAAACTCCGACCTATAT
TTTCCTCGAGACCTTCCTCTCCCTATCGCGCTCTCCGGTACCGAACTGAT
CTTCGTATGTCTATTTGCGGCAGGTTGATGCATTTACGACCGGTCTACAC
GCGTATGCACAAATATCACCACTTCTACAAGAGCCCAGAGCCCTTCGATG
ACTTGGTAGGTCCCCGTCAAACGTTGTTCATCATTTCATGTGACCCAAAA
GCTGTTCCCTGCACGCTTCCATCTGCCGTGTGTGATGTTTTGTTTGTTGT
TATTGTCAGCGAGGGCCGCGGCCCCAATGAGAGTTCATCAGGTTCGGCAC
GTCGTAAACCAACACGCCTTCGTTTGCGTTGTGTTTTTGTTTATATTTTC
GTTTGTTTTGAGGCATGCGCTACATTACTCTCTATTGAAAGCAGCCTGTT
TGCGGTCGACGTCACTCGCCGCTGAACGCATCTTGCGCACGGTCGAAGCA
GCCGCGCAGGTGCGGTGTCTCTCTGTTGCGCGACGAGCTTTACAGTTGGG
AAGGAATGGGTGACCTAAACGCTACGTCAAAAGAGCAATAGGATGCCACT
CTTCCGTGAATACATGGTGGGATTCTAATGTACACATCTGTGCCAAACGA
ACATACAGGCCACAAGAGAGCTCTAAATCTCCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCTTCCCTCCCTCCCCCCCCCCCTAACGTTCCCCCCC
GACCCCCCGTCCGTCCTCTCGGCGTGTTGTTACGTTCCGTTCACCGGCCG
GAAGATGATTCATCCTTTGGAGGCGTTTGGGTATTACCTGCAGCTATACT
CACCCCCATTCCTGTTCGTGGTACCGGTTTCGAGCTTCTTGCTGTACATG
GTGGTGTGCGGCGTGTGCGGGGTTTTGGACCACAGCGGGGTAGCGCTTTC
GATGCCGGGGTTGTACGATACGGCAGGTGAGCAAGAGATCCGCGGAGTGG
CGTGAATCTGTGTGCAAATACGAAGTTTAAGCATGGTAAGAATAATTTAT
CAAACAAGTATGCGTTGTTCGTGTTCACTTTCGTGTTTTTGTTCATTGCG
AAAAATTTGTTGTCGGTTAACTTTGTATATAGCATGTGCTATGCGAAGTA
GTTGTAACCGGTGAAGCGTCGTTTAAAGCAATATCGTGTCGGCAGTAGTT
AAATGCGCTACGAAAGCAACGTTCGGCATCTATTTGAGGTCATATTGTAT
ACGAAGTACTTCGTGCAGCAGCACTTTGAACTACAAGTTTGTTTGCTGCT
GAAGTTCGACGTACAATGGCGTGCCCCATGTCGGTATGACACGCGAGCGG
TGCCCTGAGAACGAATCTTAGGCGGCGGAGACCTACCGCACCGGAAAACT
TTACTTTAGTCGTGCAGAACGATGATATACCCAACATCTTGGAAAGGCAC
CTTTTCTCAGAAATCGTATATACATCATCTTTAACAAGTAAAATTCAAGT
GTTTGCGTCATGCAAGAGAAATCGCGCCGACGCAGTGACAGGCGTGCGTC
GTCTTCTTCGCTATGTGGTTCTTCAAAAATTCGTGCGAAGGAGAACCTGC
CGGGTTCGTAGGCAGGCGTCAGAGGTACTGCAATAACGCCCCCACCCCCC
CCCTGGTTCTCGTGTGGTGCGAAGTGTGTGTCGTTTTGCCGTCACTTCAG
TCAGCGGCCGGCTGTTGCGCTTGACAGCAAAAGGTTGCCTCCCGTCTCGT
TCAATAAGAATACCCCGATATTGGAATGCGTCTCCGCGCTTTCATGCGAA
AACACGGTTGCGATCGACCTACACAACCTCTTTTCCACGGACATATGATA
CAACCCGGCAAGCAGCGTAGTCATATCCCGAAGAAGGGTAATCGCAAGCA
GTGTTCGGACCGTCGGCTTTCCGAGACGGCTGTCCGCCGTTGCGTGTTGC
CTCTTGAATACTCTGCTGGCCGCGACATCTGACTTATTGCTGCATTTCGC
TTTTTGACATGCCCTTCCCGAACAGGACTGACTGCTCTTTGTCTCGTGCA
TGTTGCGAAAGGCAAACCGCGGGCACAAGAAAACACGGCAGCCTTTGGGC
TTTGCTTTACTGTCAAAACCACAAAGAACAACAAAAACCATCGTCAGCGA
CGTTCCGACCGCAAACGGTGGTCGTAGTTCTCTCCCTCTCTCTCTCTCTC
TCTCTCCTGATCGTTGTTCGCCCTCATGCTGTGTGGTCTCTGCATTCACC
TTCGCCTGAAGTGGGATGTCACTTGGCCCTTGGCCCATCTCTTCTACCCC
CCCCAAACATTATATCTCCCTCCCTCCCTCCCTCCCTCCCCCCTTCCCAC
CCTCCCTATCTCCCTCTCGTTATCTCTCGCTCGCTCTCTCCGCATATGGC
AGACCACGACCGTCACCACTCGCGTTTCGAGGTCAATTACGCGTTTCCGT
TTCCCTTCATGGACGTTCTTCACGGCACGTACGAGGGAAACTTTCTTGGA
AAGCGGTATGCAGCCAGCCCGCGACGGTTAAGATGACGACGTGGGAGTGC
TCCGGACACTCGCAAAGGAAGAGAAGGCCTGCACCCTGCACGTGACGGAG
GGGCTTCGTGGCTCGTCGAGCGCAGTCGATTTGGTTCCACTTTGACAATG
TTCGATCGGTTGGGACTCTGCTGCGGAGCTCAAGATGGAGCTCTTGCTGG
TTCAGGCCACAATAGAAAATAGTCAACAACAGTTCAGTGTTTTATTCCAT
TCAAACTCTCTCCTAATCGCCTCGCTCCAATTCTTGATGGAGGCCGAGAG
TTTGAGTTTAAGAGGCGCCCAAACCCCGTTTTTTTGTTTTTCCACTTGTT
GTGAAGTCGATTTTCCAATATTAAAATTTTGCTTTTTTGGACACAGGCAA
ATCTACCCTATAGCCCAACATTTACTGTTGCGTGGACTTCCTAGCCAGCT
TCTCACAAGTATCCACCGCCAACGAACCTGCTGCCTACTGGTGTCCGGTG
GACAAGGGGCGTCGTAAGCAGCAGCAGCACCCAACCACCAACGACATGTC
TTAAGTTCGTCGTCGTGAGTGATTTGTGAACGAACAAGTAATTATTTTCA
GCCAAAAACAAGCGCGGGCAGCAAATGAGGAAAAAGTATTAAACTGTACG
GTGGTTGGCAACGTTATGCTTGTACCGATCGGAGCCTATCTCCACGGCTA
CAGCACTACAACCCGCCGACAACGGACTCGATACGATGCAGCTCCTGCAT
TTTCGAAACGACATCTTGTTTTCTTAGTCTGCGACCCTGTTCCCAAGCTC
CGCAATAATAGGCGATCGGGCTCGTTATTCCTGTAGTTGAAAAGTAGGGC
GACTTCCCTGCGCTCTGTGGAGCCAAAAATGTGCTTCTAAAGTATGCCAT
ACGAAGTACTTCGTACAATTATATGTTTCCTGCACTGCTGTAAAGCCATA
TATTGCGCTTTTTAACCATAACTTTCCGAGTACTTAAATTAACGACACAC
AACAATATTTTGCCACGCAGGAGGAGTAAAATTATGGTACGCGAGCAAAA
AAACATCAACATTTATTGGAAAACTACTGGGGAGGAGACGTTTTCTGTCC
CCCATACTTTGCGGTAACCATCACTTGGAAGGTGAACCCCAAAGTGAGCT
GATTTTCGGTTAGACCGCACGTTTTATGAAGCTATTTCTTTTTTCAATCT
TGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1276:26259..35861+

>mRNA_P-littoralis_Contig1276.9.1 ID=mRNA_P-littoralis_Contig1276.9.1|Name=mRNA_P-littoralis_Contig1276.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=729bp|location=Sequence derived from alignment at P-littoralis_Contig1276:26259..35861+ (Pylaiella littoralis U1_48)
ATGTTGTCTCCAGCGTTCTTCGAAGGATTCCTGTTCATGGCTATCGGATA
CGTGCTCTTCAGGTACGAGATGCAAATCAACCTGCGGAAGGAAGAGACGC
GGCGGTGGTGGCTCCCCCTCTTCTGTCGCGACAAAAACGGCCGACATCCT
CTACATGGCGCGTTTGCAACGACCAACATCTTGATGGCGAGCACGTTCGC
AGGGACGGTGACGCATTTTATCGTTGCTGGACGAACTAGAGTATCCTGGG
ACACGGAAGTCGGGTTCTCCTGGCCTCGCACGGTGGCGGGCCTGGTGCTA
TCTCTCGCATGGCAGAGCGTTTTGGAGTACTACTGGCATAGGTTGATGCA
TTTACGACCGGTCTACACGCGTATGCACAAATATCACCACTTCTACAAGA
GCCCAGAGCCCTTCGATGACTTGATGATTCATCCTTTGGAGGCGTTTGGG
TATTACCTGCAGCTATACTCACCCCCATTCCTGTTCGTGGTACCGGTTTC
GAGCTTCTTGCTGTACATGGTGGTGTGCGGCGTGTGCGGGGTTTTGGACC
ACAGCGGGGTAGCGCTTTCGATGCCGGGGTTGTACGATACGGCAGACCAC
GACCGTCACCACTCGCGTTTCGAGGTCAATTACGCGTTTCCGTTTCCCTT
CATGGACGTTCTTCACGGCACGTACGAGGGAAACTTTCTTGGAAAGCGGT
ATGCAGCCAGCCCGCGACGGTTAAGATGA
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