mRNA_P-littoralis_Contig127.84.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig127.84.2
Unique NamemRNA_P-littoralis_Contig127.84.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig127.84.2 vs. uniprot
Match: D7FXV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV5_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 1.180e-89
Identity = 134/175 (76.57%), Postives = 154/175 (88.00%), Query Frame = 3 
Query:   54 MKTRYTPLVILIVASWVGLGQSWGGGRRAEDRAQVLAWEAFSADLSRGDCTMDSLSEQASITLPIGQVISKDEYRQACSSSMGDTTVGDTSVRGGKVVTIDRSNFSVEATVTTTAVSFKGGYQQEVSYPAAFFMSMDVKTNKLTEVRMYSQNIALLAARGYTMVPSSVYGPVIRP 578
            MKTR++ LVI IVASWVGL QSWGGGRRAED+   LAWEAFSAD+ RGDCTMDSLSEQAS+TLPIGQ ++KDEYR AC +SMGDTTVG+TS+  GK+V+IDR NFSVEA VT  A S K G+QQ+VSYPAAFFM++D++TNKL EVRMY+QNIALLAARGYTM+PSS YGPVIRP
Sbjct:    1 MKTRHSALVIFIVASWVGLAQSWGGGRRAEDKTHTLAWEAFSADMGRGDCTMDSLSEQASVTLPIGQTVTKDEYRLACENSMGDTTVGETSLHDGKLVSIDRVNFSVEAMVTAKATSLKTGFQQDVSYPAAFFMTIDLRTNKLAEVRMYAQNIALLAARGYTMIPSSSYGPVIRP 175
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig127.84.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXV5_ECTSI1.180e-8976.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig127contigP-littoralis_Contig127:370897..377502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1222
Hectar predicted targeting categorysignal peptide
Exons9
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_001360.1
Cds size531
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig127.84.2prot_P-littoralis_Contig127.84.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig127 370950..376864 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789563.8859-UTR-P-littoralis_Contig127:370896..3709491680789563.8859-UTR-P-littoralis_Contig127:370896..370949Pylaiella littoralis U1_48UTRP-littoralis_Contig127 370897..370949 +
1680789563.99721-UTR-P-littoralis_Contig127:376864..3775021680789563.99721-UTR-P-littoralis_Contig127:376864..377502Pylaiella littoralis U1_48UTRP-littoralis_Contig127 376865..377502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789563.900173-CDS-P-littoralis_Contig127:370949..3710271680789563.900173-CDS-P-littoralis_Contig127:370949..371027Pylaiella littoralis U1_48CDSP-littoralis_Contig127 370950..371027 +
1680789563.9109647-CDS-P-littoralis_Contig127:371984..3720421680789563.9109647-CDS-P-littoralis_Contig127:371984..372042Pylaiella littoralis U1_48CDSP-littoralis_Contig127 371985..372042 +
1680789563.9206154-CDS-P-littoralis_Contig127:372993..3730321680789563.9206154-CDS-P-littoralis_Contig127:372993..373032Pylaiella littoralis U1_48CDSP-littoralis_Contig127 372994..373032 +
1680789563.9321961-CDS-P-littoralis_Contig127:373605..3736491680789563.9321961-CDS-P-littoralis_Contig127:373605..373649Pylaiella littoralis U1_48CDSP-littoralis_Contig127 373606..373649 +
1680789563.9400003-CDS-P-littoralis_Contig127:374193..3742621680789563.9400003-CDS-P-littoralis_Contig127:374193..374262Pylaiella littoralis U1_48CDSP-littoralis_Contig127 374194..374262 +
1680789563.9540818-CDS-P-littoralis_Contig127:374764..3748331680789563.9540818-CDS-P-littoralis_Contig127:374764..374833Pylaiella littoralis U1_48CDSP-littoralis_Contig127 374765..374833 +
1680789563.9670348-CDS-P-littoralis_Contig127:375297..3753661680789563.9670348-CDS-P-littoralis_Contig127:375297..375366Pylaiella littoralis U1_48CDSP-littoralis_Contig127 375298..375366 +
1680789563.9753435-CDS-P-littoralis_Contig127:375887..3759501680789563.9753435-CDS-P-littoralis_Contig127:375887..375950Pylaiella littoralis U1_48CDSP-littoralis_Contig127 375888..375950 +
1680789563.9839537-CDS-P-littoralis_Contig127:376822..3768641680789563.9839537-CDS-P-littoralis_Contig127:376822..376864Pylaiella littoralis U1_48CDSP-littoralis_Contig127 376823..376864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig127.84.2

>prot_P-littoralis_Contig127.84.2 ID=prot_P-littoralis_Contig127.84.2|Name=mRNA_P-littoralis_Contig127.84.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
MKTRYTPLVILIVASWVGLGQSWGGGRRAEDRAQVLAWEAFSADLSRGDC
TMDSLSEQASITLPIGQVISKDEYRQACSSSMGDTTVGDTSVRGGKVVTI
DRSNFSVEATVTTTAVSFKGGYQQEVSYPAAFFMSMDVKTNKLTEVRMYS
QNIALLAARGYTMVPSSVYGPVIRPA*
back to top

mRNA from alignment at P-littoralis_Contig127:370897..377502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig127.84.2 ID=mRNA_P-littoralis_Contig127.84.2|Name=mRNA_P-littoralis_Contig127.84.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6606bp|location=Sequence derived from alignment at P-littoralis_Contig127:370897..377502+ (Pylaiella littoralis U1_48)
GCCTAAGCTGCCGTGAAGAAGAGCTGGCTCTAAAGCTTCACTTGGTGGGT
AGGATGAAGACGCGATATACCCCCCTCGTGATCTTGATCGTGGCTTCATG
GGTGGGACTAGGACAGTCGTGGGGTGGAGGGGTGAGTGCGTTGGGGCGTA
GTGTAAATTCATTCAGCAGAGAAAAGTACCGGCATGCACCCCTTTGTTGA
GGTATTTTGCCCCATGTCTCCCTTCTGTCAATGTGACTTCTGGCACTTGT
TGCGGGTGCTGCACTGCTGTAATGCTCTAGCACACACCTCTTGTTTGCTG
GTGGTCCTGTCACAGGGTTAGGTTAGTGCGTGTCTGTAGCTGAAACATAT
ATGGTGATCGTGAAATACCTTTATCTACTTGTTCATAATGTTGGGTGCCC
GAAGCGTTCCTCTGTTGGTTCTGTTGGTTCTCTCTCACATGACAACAGCA
TGTCACGGCGGTGCTTAACTCGGAAGTAACGAAGCCTGAAACATAGATAC
GATGACATTTTCGTCATACCGCTGTTTGCCTCTTCATGACTCGGTGCTCA
TTGTACGTCTGTTCCATGTTCCTTTCATTTGCATGACTATCGATATCGTA
CTGCTGTACAGTACAAAGTACTCGAAGTAGAGGGACATTCCACTGAAACC
CAGACAGAGGCAAAACAGCAAAACAGAGTACGTACAATGTACAAGTTCCA
AATCATACTCCGGAGTATCTTCGAACCTAATTACTGCTTGTTAAGCTCTA
CTTTGCTGCTTCTGTATGATATCTGGATTGAAGGTGATTGAACTGCTGCC
GGTACCTATCATACCCGTGCATTTGATGACATGTGCATGGCACCAGCACA
ACATCCAACCCTCGCGCGAACATTCCAACCAAGTGTGCATTTGACTAACG
CATTGAATAATTGTAACATTGTCGTGTTCGTCTGTGCCTTCTCGTGACCC
ATTGTGTCATATGGTATGCCGCCCTTCGTTCCGTTCCGCCTTTCATCTTC
CATCCCCGTTCCGCTCTTCGTATACTTCGTACTTGTTCTACATGCATGGA
TTTTCTTGATGTCATGGTAATACCACCCGCCCAATCAGCGGAGAGCAGAA
GACAGGGCGCAAGTTCTTGCGTGGGAGGCGTTCTCGGCAGACCTGAGTAA
GTCCTACAGCAGCACCAGTAGTAGGTCTTGAGGTATTCCTATACATGAGA
ATTTGAAACGTGAACGCCCCTGTTCTCCCCCCCCCCCCCTCCCCCCCCTC
TCTCTCTCCCTCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTC
TCCCTCTCTCTGGAAATAACAACAAAGAGCTCAACCTTGTCGAGTGTGTA
TCACTTCGTTTGTGTGGAGTTTTTCGGGGAAAAGACAAAGGACAAGCCGC
CCCTCTTCGCTATCATTCGTCGGAGTACGGCAGTTACGCCTGACAGGAGA
AGACGACACGACGCTGTCCGTGATTTGATTCAACACACAGCAAAGCGTAC
TGCTGTGCAAATTGTTGCTTATCCTTCCTTCACACAAGCGTGTTGATTAC
TCGCAGTGCTCTATGTAACGTTCCGCTGTAACTGAATCGCTTGCTTGTCT
GTCTGGTCGGGTCCCGCCCCAGCCAGACCAACCGTGTACGACGATGTGTG
ACACGGGACCCCTTGGACCGATTTTCATAGTCGAACTACGCCGCAGTAGA
AAATATGCTCATGCCAAACGATGCCTTTGTTTTCGAAATGATATTCTCGA
CCGATCCAGATATTTCCCACTTCACCCTTTTTCGGCACCGAAGATCTTGC
TTCGGTGTGTGAGGTGTCGAGGTTTAAAAATCGATCGGTTCGTGGGGATA
TCATGCACTGCTGTATTCAGTACACATCGACCCGTCGTGCACGGTGCAGC
AGTTCTACCGCATCATGGATACGATCTTTGCAGAGAGCAGTAGCACCATG
TGTATGATGGCTCGATCGATCCCGCGTGCGTGCACGATTGTTCCCGGCGC
TCTTACTGTTGAACTAACTACTCCCGAACCGCCTTCCGTTGCTCTGACTC
ATGACGAACCCCCCCGCGCGCTCGCATATTCCCCCTCAACTGGACAGGCC
GAGGTGACTGCACAATGGACTCCCTTTCGGAACAAGGTGAGCTACTGCAA
CACTAGATAGAGGGCGAGGGGGATACTTCTCGGTGATCGCGTCGTCTTTG
TTGTTGAGCTCCTTCGAAGTGCGACATCTCGACCATGGCTGGCGTCACTC
ACCGGCCCTGGATTATTGGCCGATCACGACACAGCAGCACCAATGTTGAT
CAAGAAAACTGCGGGCACTTGCATGTCTTTTCTCTCTAAGGAAGACGAGA
CTAACGCAGTATCTACCGAATGACCCTTGGTGTCGCCGATCAGGAGGGAG
CAAGCAAGCAGCACGTGACACTGCTGCCCCATCACTCGAAGGCGTGTGAC
AGCGACAGGATTAGCACGTCTGTCTTCCAGCAGCAGCCGCAGATCGATCA
CCCGCCCACCGTACGCCCCCCCCCCCACTCCTTTCGTTCCGCCTTTGTGT
CTTTCGTGGCTCTTGCTTTCCCCTCCTTGCCGTCCTTTTTTTCTTGGTCC
TTTTCGTGTGTACACCAACCGCATGGTGCGTTTTCGTGGATCAATTTTCT
CTCCGCGAAACTCGACGAACTGCGTGCTCTTCGCTACATGCCGTTCATGA
ACTGGACAGCTAGCATCACTCTGCCGATAGGGCAGGTCATTTCTAAGGAT
GAGGTGAGGAGGTAAAAGGGGCGCCGAGCGCACTCTTGGGTTGTTCGCGT
CTCTTGCTTGACTGTCGTCGATCCCCACGGGCCAGTATTTCTTGAACTGA
GACAAGATAAGGCCCCTTTCCTTGTATCTAAAGGAGACACCGTGCCAACA
TTGCACGAGACGATGCTCCGTACGCGATTTCCGTATCTGAGCAGTTTCAA
CAGTGATTTCAATTTATCCATCTTTCACAATTTCAAGACTGCAAAGACCG
TCGCCCATCGCCTTAGCTAGCCATTTCTTCCTCTCTTCAGCTTCGTCACC
GTATAGTCCGCCGTTTCATATGATTTATAGGTTCCGGCTTTCCTCGGCTA
CCTTTCTTCGAACTCATGCGTCAGGTCCTTGTACTCTTATGATGTATTTT
CTCTCTGCGTTGGTTCCAAATGGGGGACCAGGTAAATCGTCTTTTTTCCG
AACTCTGCTACAGTTTCCAGCCCGTCTCGACAGCTGAACCATCAGCCCAT
GACAACGTTAACCTCCCTCTGTTGCTGTTCCCGCCCTTTTTTTGCAGTAC
CGACAAGCGTGCTCTAGCAGCATGGGGGATACTACCGTTGGCGACACTTC
CGTTCGCGGTGGGAAGGTGAACATAGACCTGCCTCAACTATTCTGATATT
CTCAACCATTGGTATTTCACACTACCACAACTTCTTCCACCGCTACTACC
ACCACCACTACTACTACTACTACTACCACAACTGCTACTGCTGCTACTCT
CTTCGTCTCTGTGCGTAAGCAATCCAATGGTCCACGAAAGATCCCCCAGG
AACTCCAAGATAATTTCAAGACAGTACGCCTTGGTCTACGACACAGATGA
CCGACCGAGGCATACGTCCTAGATGCAGTGTAGCAACAGGAAGAGACGAA
ACAAATCAACTAGATGTGGGGTGCGAGGCCGAACGCCCATACGAACCAGG
GCGCGCGTACAGAGCACGCAGCGTACACATTCAACGTATACCACACATTG
CCATCCGTTTCCTTCATCGATCTGACCCCTGCGCTGCTCCTGCTCACATT
GTCTGCGGCTTGTCGATTTTTTTCGTTGGATGGTCGCCTTTTGTTTTCTC
CTCGCCATTTTTGTTGAGGTGGTGACGATAGACAGGTCGAACTTTAGCGT
GGAGGCGACCGTGACGACAACCGCTGTTTCCTTCAAGGTATCACACAACG
TTAACGTTCGTTCAGTAGCCTAACCTGCTCAGATTGAATGATCATCTGAC
ACGGTCGACTTTGAGTTCTTGTTCCCCCTCTCCTATGAAGAGTTGAGCGT
AAAGAGGGGGATCTGAGGAAGCTTTGCAGTATGGGATTTCAATACATGGT
TCATTGGGTATCACAGTTGAAGAGACCAATGGCTATGGTTTGCGGTGAAA
TTGCTCCCAGCCAGAGATGAAAAAGTTTATTCGATTGTATCAGGAATGTC
ATAATGCTGCACAGAGTAAGTATGCCTGGCAACCACGCATCAAAATGCGG
CGCGATAAAGGGTAGGAAGGATGTCGTGCCTTAGCTGAGATGCGGCTTCT
AACACGGAGGTCCACGGTACATGGTGAGCAACATTATGCGTTGTTGTTGC
CTGTCCCTTCCGCCGCCCCATCCTGCGTTATGACCTGTTCCTCTCTCACA
GGGTGGTTACCAGCAAGAGGTCAGCTATCCCGCCGCATTTTTTATGTCCA
TGGATGTCAAGACCAACAAGGCAAGGCGAGGGAGAGGAACGATCATTCAA
ATGTGGTTTGATACAACCCGTGTACATACGTGACATCAGCCTATGACAGC
AGTACCCACGGCAATATTTCCAGACACAAAAAACGGGTTTGCGGATGGTT
CCCAACCATGGGGGGAAAGTACGAAGAACAGCAGTGCTTCGTATATCTGA
AAGGTCGAAACACTGCAGCAAGCACTGGAATAATATGATGTTTCTCTTGT
TCTTTCTTTATAGAGCTCCGTTTAGTAGAGAGGGGGGGGCTAAACACGTT
TTTGTTGCTTGTGTGGAAGAAAGTTTTTGATATTTGGAAGCCCCGCCCGC
ACCTCTTCTGAGAGAAGTCCAGGAGGGGTGCGTTCGTGCCCCGGCAAAAT
TCGGCACGTTTTTTTTTGTGTGGTTTACTCCGAAGAGCAACCTCGAATGT
GCTTCGTACGTTTTTTTTTTGGGGTCTGATTCGATTTATGATCTCAAATG
TTGTACGTCCGCTCTCCACCCGCCCCTCACAAAAACTGCAGTTGACAGAA
GTCCGGATGTACTCGCAAAACATCGCGCTGCTTGCTGCAAGGGGGTACAC
CATGGTGAGTACTAATAGCAAAACATGTAGAGAACCACCCGAGTGAACTT
TTCAAGGCTTTGCCAGAGTTTACTCGATATGGCGGTTATGCATACATGAG
CCACACGCCCTCTGCACTTCAAGACAAAGTTGAGTATCCTGCAGTTGCGT
GTTCCTCGACAAGCACGGGCGAAACTGACGCTTTCACAAAGAACCGACAC
GTCGAGGAAACAAATGCTGGCGTTTTGTCGCCACTGCCGTCAACGGAAAC
ATGTTCAGCTCTTGAATATTTTTGATTGCGGATGCTTGCGCTTGCTGCTC
TTCACGACCAGTTCAGTACGACTGGTTTCCCTTGTGAGTATCGAGTCACG
CCATGATATAATAGCTGAATAAATGAGGCGGACGGAGCGGTCTGTTATGA
AGTTGTTTTCTTGCTTTCGTTTGGCGTTTCGCCATTTTGTTTCTCTATTC
CCCAGATCCCATTCGAAAAAAGTCAACTACCATTAAAACATCAAAAATGT
TTCCCTTGCCTCCCGGCCAGAAAGCTCTCAAATACGAGAAATAATCTAGA
CCAAGGAACGACAGAACAACGGTAGTCAGCGTGTGATATCAGCATGAGGA
ACCCAGTAGGTAGGTGTTGTAGTGTTTGGCGCCCAGGCCACCTTCCCTCT
CCGAGTCTCCGAGAGTTCTTTACTCAGGACGTGCGAGTGTTGGTGGGTGC
GGGTGGCGGTCCGTGTCATCCGAACCCTATTTCGGACCTCCGCGGTGGTT
GAACAAATACCTGGTGGTATTTTATCCTTGTTCGGGAGTACTCCGATGCC
CTCGTGCACGCCGCTGCTTGGTTGCAACCTTTTCCTGCCTGAATCTAATT
TCGTGCAACCTCGTCAAAATGCACAGGTGCCCTCCAGTGTGTATGGCCCC
GTCATCCGCCCAGCGTGACGTGCACCGTTCTCCTGATGACGATAGCTTAG
CTGTCAAATACGCTGCGGTGATGGCCAGCTTGTAGATGAGGTTGTTTGTT
GTTGCTGTTGTTGTTGTTGTTCTAGCTGCTGTTGATCGTGTTGGTCGTTT
TCGTGTTGATGTGTTGATACTACTGTCGTTGTTGACTGCTGTGTTGATGA
TGTTCTTTGGGATAGTGACTGTGAACCCTGCACTCTTTGACAAGTATCAC
AACATTTTGACCATTTTTTGAAATGAGAGGGGGCATGTTGCGCTACGGGG
TGCCGCCACGTGTGTGCGTAAATGACACCGGTAGGAGTCGCTATTTTTCA
GCATTAGAAGCAGCCAATCGTTGCTGGCTTTTGACCATGGCGAACGGGCG
CTTGTCGACGAGGAAACATCGCGCCCGGCAACAGTTGCCGGTTTCGATCG
CGAAGGCAACCGGTCTGGACAGACTCATCCATAGGCGCATCAAAGAAACT
TGTCGGTTGCTTCTTGCGTGGAGCGACTGATGAGTCTTTTCTTTTTCGAC
AGCAGTCGCAGGCATTAGAACTGGGATCTATGACAACCACAGCTCAGCAG
AACAACAGCATGCCGCATGGTACCGGAGTCATACGTCACAAGCAGCAGCC
CGCTTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig127:370897..377502+

>mRNA_P-littoralis_Contig127.84.2 ID=mRNA_P-littoralis_Contig127.84.2|Name=mRNA_P-littoralis_Contig127.84.2|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig127:370897..377502+ (Pylaiella littoralis U1_48)
ATGAAGACGCGATATACCCCCCTCGTGATCTTGATCGTGGCTTCATGGGT
GGGACTAGGACAGTCGTGGGGTGGAGGGCGGAGAGCAGAAGACAGGGCGC
AAGTTCTTGCGTGGGAGGCGTTCTCGGCAGACCTGAGCCGAGGTGACTGC
ACAATGGACTCCCTTTCGGAACAAGCTAGCATCACTCTGCCGATAGGGCA
GGTCATTTCTAAGGATGAGTACCGACAAGCGTGCTCTAGCAGCATGGGGG
ATACTACCGTTGGCGACACTTCCGTTCGCGGTGGGAAGGTGGTGACGATA
GACAGGTCGAACTTTAGCGTGGAGGCGACCGTGACGACAACCGCTGTTTC
CTTCAAGGGTGGTTACCAGCAAGAGGTCAGCTATCCCGCCGCATTTTTTA
TGTCCATGGATGTCAAGACCAACAAGTTGACAGAAGTCCGGATGTACTCG
CAAAACATCGCGCTGCTTGCTGCAAGGGGGTACACCATGGTGCCCTCCAG
TGTGTATGGCCCCGTCATCCGCCCAGCGTGA
back to top