mRNA_P-littoralis_Contig1268.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1268.9.1
Unique NamemRNA_P-littoralis_Contig1268.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1268.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1268contigP-littoralis_Contig1268:31699..33038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size594
Hectar predicted targeting categorysignal peptide
Exons2
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789560.0932415-UTR-P-littoralis_Contig1268:31698..317351680789560.0932415-UTR-P-littoralis_Contig1268:31698..31735Pylaiella littoralis U1_48UTRP-littoralis_Contig1268 31699..31735 -
1680789560.1364226-UTR-P-littoralis_Contig1268:32919..330381680789560.1364226-UTR-P-littoralis_Contig1268:32919..33038Pylaiella littoralis U1_48UTRP-littoralis_Contig1268 32920..33038 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789560.106807-CDS-P-littoralis_Contig1268:31735..321121680789560.106807-CDS-P-littoralis_Contig1268:31735..32112Pylaiella littoralis U1_48CDSP-littoralis_Contig1268 31736..32112 -
1680789560.1191058-CDS-P-littoralis_Contig1268:32858..329191680789560.1191058-CDS-P-littoralis_Contig1268:32858..32919Pylaiella littoralis U1_48CDSP-littoralis_Contig1268 32859..32919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1268.9.1prot_P-littoralis_Contig1268.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1268 31736..32919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1268.9.1

>prot_P-littoralis_Contig1268.9.1 ID=prot_P-littoralis_Contig1268.9.1|Name=mRNA_P-littoralis_Contig1268.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=146bp
MRLPGVTGAIWASFIIAAPEASGARPVLDTCTPLDTVSLLGAQPTQDGWR
TSASTDQDLDLDDNAVSSSLRNACIGVKGNNSGRTCGTALGKRACIDALV
RQDRDHIGSGGLRFVEKGTLPQILALHGTSTKGLGWDCWLLERMP*
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mRNA from alignment at P-littoralis_Contig1268:31699..33038-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1268.9.1 ID=mRNA_P-littoralis_Contig1268.9.1|Name=mRNA_P-littoralis_Contig1268.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1340bp|location=Sequence derived from alignment at P-littoralis_Contig1268:31699..33038- (Pylaiella littoralis U1_48)
TCAGAAAAAGGTAGAGACAACCTGACGGTTTCGGAACGATGCGGCGTCAC
TTCAGCCAATCAGTGGCCAATATTTCATAGATTTTTATTATTTTCCATCG
GAGATCATCCCCACAAGCGATGCGGCTGCCTGGGGTCACCGGAGCGATCT
GGGCCAGCTTCATCATCGCTGCCCCAGAAGGTACGACGGTCGACTATGGT
GTAGATTATCTTAAAAGATGATGACGCTGAAAGTTTCGTGTCTTTTGGTG
AGCTGTGTGTCGAAGTCTGGCAGTGACATGGTTTGGGCGCCAACCACCTC
TACACAGCAGCAGGAGGCCGCTAATAGAGCCCACTTCGGCATTCGCACCC
TACAGGTCGAAACCTCTATAGGTTATTGGAGTATGTCCATTGCCATGCGT
TCCAGATGGGCTACGAACTGTGCCCGACCTCAATCGGTCCACTACAAGTA
GAGAAATGTTCTAGAATGTGTTACAATAACAGCTCGTGGATCAGCTGCCA
TTCTGGAGGGGACAATGACCCGAGGCACAGCAGCCAGTGCCCCACAAGGC
AGTAAGCACTTCCGGAGGATCGAGAAAAGTTCACCCACCATCAGTCATGG
TAGTTGGCCTGTGAATGACGGTGGAATTGATGTTGTACATGGACTACAGC
ACAAGAAACCCGTTTTTTATTGTATGGGTCGTGGTTGAGGGTCAGCTCCC
ACCTTGCCGTGACCCCATGACAAGGTCTTTATCGTGCATAGTGCTGTCCT
CTTTGGCTTCGATATGTACCAGGGCGTAGGAGCACTTGAAAGATAGCTGA
GACCAAGGAGAAGCACAAACAAAAAAAGCCTTTAGAGGTTACGAATTGGG
CACAGTTCAAAACGTCGATACCGCAAAGCCTAAAATGCCCCTAAAACGGT
GTTATTGTACCGTTTTTACTGTGCAGCCAGCGGAGCGAGGCCCGTCTTGG
ACACCTGCACACCACTGGACACCGTTTCTTTGTTGGGCGCCCAACCAACC
CAGGATGGTTGGCGTACGTCCGCAAGCACTGACCAAGATCTAGACCTTGA
TGACAACGCTGTATCCAGCTCACTACGCAATGCATGTATCGGAGTAAAAG
GAAACAACTCAGGAAGGACCTGTGGGACAGCCTTGGGAAAAAGGGCGTGT
ATCGACGCCTTGGTAAGACAAGACAGAGACCACATAGGGTCTGGTGGCTT
GCGTTTTGTGGAGAAGGGAACCCTGCCCCAGATATTAGCCCTCCACGGGA
CTTCGACGAAAGGGTTAGGATGGGATTGCTGGTTGCTGGAGAGGATGCCG
TAGATGAGGATCGCAGTGCCGCTGCTCAGGAGAAGGAGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1268:31699..33038-

>mRNA_P-littoralis_Contig1268.9.1 ID=mRNA_P-littoralis_Contig1268.9.1|Name=mRNA_P-littoralis_Contig1268.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig1268:31699..33038- (Pylaiella littoralis U1_48)
ATGCGGCTGCCTGGGGTCACCGGAGCGATCTGGGCCAGCTTCATCATCGC
TGCCCCAGAAGCCAGCGGAGCGAGGCCCGTCTTGGACACCTGCACACCAC
TGGACACCGTTTCTTTGTTGGGCGCCCAACCAACCCAGGATGGTTGGCGT
ACGTCCGCAAGCACTGACCAAGATCTAGACCTTGATGACAACGCTGTATC
CAGCTCACTACGCAATGCATGTATCGGAGTAAAAGGAAACAACTCAGGAA
GGACCTGTGGGACAGCCTTGGGAAAAAGGGCGTGTATCGACGCCTTGGTA
AGACAAGACAGAGACCACATAGGGTCTGGTGGCTTGCGTTTTGTGGAGAA
GGGAACCCTGCCCCAGATATTAGCCCTCCACGGGACTTCGACGAAAGGGT
TAGGATGGGATTGCTGGTTGCTGGAGAGGATGCCGTAG
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