mRNA_P-littoralis_Contig1267.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1267.2.1
Unique NamemRNA_P-littoralis_Contig1267.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1267.2.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 442 bits (1136), Expect = 5.010e-147
Identity = 225/421 (53.44%), Postives = 283/421 (67.22%), Query Frame = 1
Query:    1 LLVDSGASESFLDDELIPDLKSRMLEFKAFSTPREITTAGKHTLHGIGTGIISFTIRDTHGTQLPVNMRALVVPGLDRNIFAPIAELRNGVRFVLEKKT-YLTIDGTVIPLKQDPRDQGMCSLDITFQRDSHGVLGKS----EGVSFDGGTGAVYTATTSASVWHRRLGHMNPRKMEVLRKKKGNGVEYTGTISGCDICSVTKSKQQAHPKESTRKTTRPMQLIYTDLMGPITPAAK---GGHRFVSKFTDDYSRMKEIYLLKNKPEAAESLHQYNMTVAVPLGLRIENLRCDKGGEYTGQEFRTLCVGTGTNIEYTATNTSQQNGVSERDGQILAKIT*CFMKDGDFPPFMWGELMFTATYLSNRSPHSTLEGATLYSKMHNMEPDLTGLRAIGARAFVHRETFTNKLEDRAFEGKLYGY 1239
            LLVD+GASE   D+ LIPD    + ++   ++P+ +  AG+  L G  TGI+  T++D  G QL V ++ L+VPGL RNIF+P + L+ G+R V EK T +LTI G VIPL QDPRDQGMC+LDITF+++      KS    +  S      AV     SA  WHRRLGH+N R +++LRK  G  V+Y  ++S C +C + K KQ  HPK+STR+ +RP QL+  D MGP+ P AK   G   +  K TDDY++MKE+YLL+ K +  E++H YNM VA   G RIE +RCDKGGE TG EFR  C  +   +EY ATNT QQ GVSERDGQ LA +T C +KDGDFPP MWGELM TA YL NRSPHS L GAT YSK+ N  PDL+GLR IGARAFVH E +  KL+DRAFEGKL G+
Sbjct:  208 LLVDTGASEPMFDNRLIPD--GNLHDYTQRNSPKIVDVAGERQLKGTATGILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLRNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGF 626          
BLAST of mRNA_P-littoralis_Contig1267.2.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 441 bits (1135), Expect = 6.690e-142
Identity = 243/462 (52.60%), Postives = 304/462 (65.80%), Query Frame = 1
Query:    4 LVDSGASESFLDDELIPDLKSRMLEFKAFSTPREITTAGKHTLHGIGTGIISFTIRDTHGTQLPVNMRALVVPGLDRNIFAPIAELRNGVRFVLEKKT-YLTIDG-TVIPLKQDPRDQGMCSLDITFQRDSHGV---------------LGKSEGVSFDGGTGAVYTA--TTSASVWHRRLGHMNPRKMEVLRKKKGNGVEYTGTISGCDICSVTKSKQQAHPKESTRKTTRPMQLIYTDLMGPITPAAKGGHR---FVSKFTDDYSRMKEIYLLKNKPEAAESLHQYNMTVAVPLGLRIENLRCDKGGEYTGQEFRTLCVGTGTNIEYTATNTSQQNGVSERDGQILAKIT*CFMKDGDFPPFMWGELMFTATYLSNRSPHSTLEGATLYSKMHNMEPDLTGLRAIGARAFVHRETFTNKLEDRAFEGKLYGYSHNSKAYRIYNPAKGKVVESRNGTFLET 1323
            LVDSGASE+  DD LIP+   R+ E +   TP+ I  AG+  L G  TGI+  TI+D    QLPV ++ L+VPGL RNIFAP A L+ G+R VLE KT +LTI G  V+PLKQ+ +DQGMC+L ITF+ D                     K E V  D    A  +   + SA +WHRRLGH+NPR ME+LR+    GV+Y G +S CD C +TK K+   PK ++R  T+P QL+  D MGPI P AK   R   +V+K TD ++RM+E+YLL+++ E  ++LH YNM VA   G RIE LRCDKGGE TG+E R  C  +   +E+ ATNT Q+ GVSERDGQ LA +T   ++DGDFP  MWGELM TA YL+NR+PH+ L GAT YSKM+N  PDL+ LRAIGARAFVH E +  KL+DRAFEGKL GY  +SK YRIY   K KV ESRN TF+ET
Sbjct:  380 LVDSGASETMFDDRLIPN--GRLEEERP--TPKIIDVAGESQLRGTTTGILHCTIKDDKEQQLPVKLQGLIVPGLGRNIFAPTALLKKGLRCVLEDKTPHLTIGGEVVVPLKQETQDQGMCTLAITFKGDPASTSKTPPNNQEPGRKPKFRKPEAVQIDHTPHATCSVAMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNCQITKHKKAPVPKNTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVYLLRDRTETTQALHAYNMQVASE-GYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKKKLDDRAFEGKLCGYGPDSKTYRIYVEGKDKVYESRNVTFIET 836          
BLAST of mRNA_P-littoralis_Contig1267.2.1 vs. uniprot
Match: A0A6H5K8D4_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8D4_9PHAE)

HSP 1 Score: 439 bits (1129), Expect = 8.070e-142
Identity = 241/447 (53.91%), Postives = 301/447 (67.34%), Query Frame = 1
Query:    4 LVDSGASESFLDDELIPDLKSRMLEFKAFSTPREITTAGKHTLHGIGTGIISFTIRDTHGTQLPVNMRALVVPGLDRNIFAPIAELRNGVRFVLEKKT-YLTIDG-TVIPLKQDPRDQGMCSLDITFQRDSHGVLGKSEGVSFDGGTGAVYTA--TTSASVWHRRLGHMNPRKMEVLRKKKGNGVEYTGTISGCDICSVTKSKQQAHPKESTRKTTRPMQLIYTDLMGPITPAAKGGHR---FVSKFTDDYSRMKEIYLLKNKPEAAESLHQYNMTVAVPLGLRIENLRCDKGGEYTGQEFRTLCVGTGTNIEYTATNTSQQNGVSERDGQILAKIT*CFMKDGDFPPFMWGELMFTATYLSNRSPHSTLEGATLYSKMHNMEPDLTGLRAIGARAFVHRETFTNKLEDRAFEGKLYGYSHNSKAYRIYNPAKGKVVESRNGTFLET 1323
            LVDSGASE+  DD LIP+   R+ E +   TP+ I  AG+  L G  TGI+  TI D    QLPV ++ L+VPGL RNIFAP A L+ G+R VLE KT +LTI G  V+PLKQ+ +DQGMC+L IT Q       GK E V  D    A  +A  + SA +WHRRLGH+NPR ME+LR+    GV+Y G +S CD C +TK K+   PK+++R  T+P QL+  D MGPI P AK   R   +V+K TD ++RM+E+YLL+++ E  ++LH YNM VA   G RIE LRCDKGGE T +E R  C  +   +E+ ATNT Q+ GVSERDGQ LA +T   ++DGDFP  MWGE M TA  L+NR+PH+ L GAT YSKM+N  PDL+ LRAIGARAFVH E +  KL+DRAFEGKL GY  +SK YRIY   K KV ESRN TF+ET
Sbjct:  499 LVDSGASETMFDDRLIPN--GRLEEERP--TPKIIDVAGESQLRGTTTGILHCTIEDDKEQQLPVKLQGLIVPGLGRNIFAPTALLKKGLRCVLEDKTPHLTIGGEVVVPLKQETQDQGMCTLTITAQT----KFGKPEAVQIDHTLHATCSAAMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNCQITKHKKAPVPKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVYLLRDRTETTQALHAYNMQVASE-GYRIEVLRCDKGGENTREEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGERMMTAACLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKKKLDDRAFEGKLCGYGPDSKTYRIYVEGKDKVYESRNVTFIET 936          
BLAST of mRNA_P-littoralis_Contig1267.2.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE)

HSP 1 Score: 441 bits (1134), Expect = 1.070e-141
Identity = 242/462 (52.38%), Postives = 304/462 (65.80%), Query Frame = 1
Query:    4 LVDSGASESFLDDELIPDLKSRMLEFKAFSTPREITTAGKHTLHGIGTGIISFTIRDTHGTQLPVNMRALVVPGLDRNIFAPIAELRNGVRFVLEKKT-YLTIDG-TVIPLKQDPRDQGMCSLDITFQRDSHGV---------------LGKSEGVSFDGGTGAVYTA--TTSASVWHRRLGHMNPRKMEVLRKKKGNGVEYTGTISGCDICSVTKSKQQAHPKESTRKTTRPMQLIYTDLMGPITPAAKGGHR---FVSKFTDDYSRMKEIYLLKNKPEAAESLHQYNMTVAVPLGLRIENLRCDKGGEYTGQEFRTLCVGTGTNIEYTATNTSQQNGVSERDGQILAKIT*CFMKDGDFPPFMWGELMFTATYLSNRSPHSTLEGATLYSKMHNMEPDLTGLRAIGARAFVHRETFTNKLEDRAFEGKLYGYSHNSKAYRIYNPAKGKVVESRNGTFLET 1323
            LVDSGASE+  D+ LIP+   R+ E +   TP+ I  AG+  L G  TGI+  TI+D    QLPV ++ L+VPGL RNIFAP A L+ G+R VLE KT +LTI G  V+PLKQ+ +DQGMC+L ITF+ D                    GK E V  D    A  +   + SA +WHRRLGH+NPR ME+LR+    GV+Y G +S CD C +TK K+   PK+++R  T+P QL+  D MGPI P AK   R   +V+K TD ++RM+E+YLL+++ E  ++LH YNM VA   G RIE LRCDKGGE TG+E R  C  +   +E+ ATNT Q+ GVSERDGQ LA +T   ++DGDFP  MWGELM TA YL+NR+PH+ L GAT YSKM+N  PDL+ LRAIGARAFVH E +  KL+DR FEGKL GY   SK YRIY   K KV ESRN TF+ET
Sbjct:  380 LVDSGASETMFDNRLIPN--GRLEEERP--TPKIIDVAGESQLRGTTTGILHCTIKDDKEQQLPVKLQGLIVPGLGRNIFAPTALLKKGLRCVLEDKTPHLTIGGEVVVPLKQETQDQGMCTLAITFKGDPASTSKTPPNNQEPGRKPKFGKPEAVQIDHTPHATCSVAMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNCQITKHKKAPVPKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVYLLRDRTETTQALHAYNMQVASE-GYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKKKLDDRTFEGKLCGYGPGSKTYRIYVEGKDKVYESRNVTFIET 836          
BLAST of mRNA_P-littoralis_Contig1267.2.1 vs. uniprot
Match: A0A6H5JL01_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL01_9PHAE)

HSP 1 Score: 436 bits (1120), Expect = 6.880e-141
Identity = 240/462 (51.95%), Postives = 301/462 (65.15%), Query Frame = 1
Query:    4 LVDSGASESFLDDELIPDLKSRMLEFKAFSTPREITTAGKHTLHGIGTGIISFTIRDTHGTQLPVNMRALVVPGLDRNIFAPIAELRNGVRFVLEKKT-YLTIDG-TVIPLKQDPRDQGMCSLDITFQRDSHGV---------------LGKSEGVSFDGGTGAVYTA--TTSASVWHRRLGHMNPRKMEVLRKKKGNGVEYTGTISGCDICSVTKSKQQAHPKESTRKTTRPMQLIYTDLMGPITPAAKGGHR---FVSKFTDDYSRMKEIYLLKNKPEAAESLHQYNMTVAVPLGLRIENLRCDKGGEYTGQEFRTLCVGTGTNIEYTATNTSQQNGVSERDGQILAKIT*CFMKDGDFPPFMWGELMFTATYLSNRSPHSTLEGATLYSKMHNMEPDLTGLRAIGARAFVHRETFTNKLEDRAFEGKLYGYSHNSKAYRIYNPAKGKVVESRNGTFLET 1323
            LVDSGASE+  DD LIP+   R+ E +   TP+ I  AG+  L G  TGI+  TI D    QLPV ++ L+VPGL RNIFAP A L+ G+R VLE K  +LTI G  V+PLK + +DQGMC+L ITF+ D                    GK E V  D    A  +   + SA +WHRRLGH+NP  ME+LR+    GV+Y G +S CD C +TK K+   PK+++R  T+P QL+  D MGPI P AK   R   +V+K TD ++RM+E+YLL+++ E  ++LH YNM VA   G RIE LRCDKGGE TG+E R  C  +   +E+  TNT Q+ GVSERDGQ LA +T   ++DGDFP  MWGELM TA YL+NR+PH+ L GAT YSKM+N  PDL+ LRAIGARAFVH E +  KL+DRAFEGKL GY  +SK YRIY   K KV ESRN TF+ET
Sbjct:   64 LVDSGASETMFDDRLIPN--GRLEEERP--TPKIIDVAGESQLRGTTTGILHCTIEDDKEQQLPVKLQGLIVPGLGRNIFAPTALLKKGLRCVLEYKAPHLTIGGEVVVPLKPESQDQGMCTLAITFKGDPASTSKTPPNNQEPGRKPKFGKPEAVQIDHTPHATCSVAMSVSADLWHRRLGHINPSAMEILRRNPATGVKYDGPVSPCDNCQITKHKKAPVPKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVYLLRDRTETTQALHAYNMQVASE-GYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAVTNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKKKLDDRAFEGKLCGYGPDSKTYRIYVEGKDKVYESRNVTFIET 520          
BLAST of mRNA_P-littoralis_Contig1267.2.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 441 bits (1134), Expect = 2.580e-138
Identity = 242/462 (52.38%), Postives = 304/462 (65.80%), Query Frame = 1
Query:    4 LVDSGASESFLDDELIPDLKSRMLEFKAFSTPREITTAGKHTLHGIGTGIISFTIRDTHGTQLPVNMRALVVPGLDRNIFAPIAELRNGVRFVLEKKT-YLTIDG-TVIPLKQDPRDQGMCSLDITFQRDSHGV---------------LGKSEGVSFDGGTGAVYTA--TTSASVWHRRLGHMNPRKMEVLRKKKGNGVEYTGTISGCDICSVTKSKQQAHPKESTRKTTRPMQLIYTDLMGPITPAAKGGHR---FVSKFTDDYSRMKEIYLLKNKPEAAESLHQYNMTVAVPLGLRIENLRCDKGGEYTGQEFRTLCVGTGTNIEYTATNTSQQNGVSERDGQILAKIT*CFMKDGDFPPFMWGELMFTATYLSNRSPHSTLEGATLYSKMHNMEPDLTGLRAIGARAFVHRETFTNKLEDRAFEGKLYGYSHNSKAYRIYNPAKGKVVESRNGTFLET 1323
            LVDSGASE+  D+ LIP+   R+ E +   TP+ I  AG+  L G  TGI+  TI+D    QLPV ++ L+VPGL RNIFAP A L+ G+R VLE KT +LTI G  V+PLKQ+ +DQGMC+L ITF+ D                    GK E V  D    A  +   + SA +WHRRLGH+NPR ME+LR+    GV+Y G +S CD C +TK K+   PK+++R  T+P QL+  D MGPI P AK   R   +V+K TD ++RM+E+YLL+++ E  ++LH YNM VA   G RIE LRCDKGGE TG+E R  C  +   +E+ ATNT Q+ GVSERDGQ LA +T   ++DGDFP  MWGELM TA YL+NR+PH+ L GAT YSKM+N  PDL+ LRAIGARAFVH E +  KL+DR FEGKL GY   SK YRIY   K KV ESRN TF+ET
Sbjct:  380 LVDSGASETMFDNRLIPN--GRLEEERP--TPKIIDVAGESQLRGTTTGILHCTIKDDKEQQLPVKLQGLIVPGLGRNIFAPTALLKKGLRCVLEDKTPHLTIGGEVVVPLKQETQDQGMCTLAITFKGDPASTSKTPPNNQEPGRKPKFGKPEAVQIDHTPHATCSVAMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNCQITKHKKAPVPKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVYLLRDRTETTQALHAYNMQVASE-GYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKKKLDDRTFEGKLCGYGPGSKTYRIYVEGKDKVYESRNVTFIET 836          
BLAST of mRNA_P-littoralis_Contig1267.2.1 vs. uniprot
Match: A0A6H5KPR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPR8_9PHAE)

HSP 1 Score: 418 bits (1074), Expect = 1.260e-136
Identity = 233/462 (50.43%), Postives = 296/462 (64.07%), Query Frame = 1
Query:    4 LVDSGASESFLDDELIPDLKSRMLEFKAFSTPREITTAGKHTLHGIGTGIISFTIRDTHGTQLPVNMRALVVPGLDRNIFAPIAELRNGVRFVLEKKT-YLTIDG-TVIPLKQDPRDQGMCSLDITFQRDSHGV---------------LGKSEGVSFDGGTGAVYTATTSAS--VWHRRLGHMNPRKMEVLRKKKGNGVEYTGTISGCDICSVTKSKQQAHPKESTRKTTRPMQLIYTDLMGPITPAAKGGHR---FVSKFTDDYSRMKEIYLLKNKPEAAESLHQYNMTVAVPLGLRIENLRCDKGGEYTGQEFRTLCVGTGTNIEYTATNTSQQNGVSERDGQILAKIT*CFMKDGDFPPFMWGELMFTATYLSNRSPHSTLEGATLYSKMHNMEPDLTGLRAIGARAFVHRETFTNKLEDRAFEGKLYGYSHNSKAYRIYNPAKGKVVESRNGTFLET 1323
            LVDSGASE+  DD LIP+   R+ E +   TP+ I  AG+  L G  TG++  TI+D    QLPV ++ L+VPGL RNIFAP A L+ G+R VLE KT +L I G  V+PLK + +DQGMC+L ITF+ D                    GK E V  D    A  +   S S  +WHRRLGH+N    E+LR+    GV+Y G +S CD C +TK K+   PK+++R  T+P QL+  D MGPI P A    R   +V+K TD  +RM+E+YLL+++ E  ++LH YNM VA   G RIE LRCDKGGE TG+E R     +   +E+ ATNT Q+ GVSERDGQ LA +T   ++DGDFP  MWGELM TA YL+NR+PH+ + GAT Y+KM+N  PD + LR+IGARAFVH E F  KL+DRAFEGKL GY  +SK YRIY   K KV ESRN TF+ET
Sbjct:  162 LVDSGASETMFDDRLIPN--GRLEEERP--TPKIIDVAGESQLRGTTTGVLHCTIKDDKEQQLPVKLQGLIVPGLGRNIFAPTALLKKGLRCVLEDKTPHLPIGGEVVVPLKHETQDQGMCTLAITFKGDPASTSKTPPNNQEPGRKPKFGKPEAVQIDHTPHATCSVAMSVSTDLWHRRLGHINLSATEILRRNPATGVKYDGPVSPCDNCQITKHKKAPVPKKTSRVLTKPGQLVQFDNMGPIDPPANYNGRTYFYVAKATDVCTRMREVYLLRHRTETTQALHAYNMQVASE-GYRIEVLRCDKGGENTGEEMRNYWRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAAVGGATPYAKMYNTTPDHSRLRSIGARAFVHHERFKKKLDDRAFEGKLCGYGPDSKTYRIYVEGKDKVYESRNVTFIET 618          
BLAST of mRNA_P-littoralis_Contig1267.2.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE)

HSP 1 Score: 436 bits (1121), Expect = 1.330e-136
Identity = 241/462 (52.16%), Postives = 303/462 (65.58%), Query Frame = 1
Query:    4 LVDSGASESFLDDELIPDLKSRMLEFKAFSTPREITTAGKHTLHGIGTGIISFTIRDTHGTQLPVNMRALVVPGLDRNIFAPIAELRNGVRFVLEKKT-YLTIDG-TVIPLKQDPRDQGMCSLDITFQRDSHGV---------------LGKSEGVSFDGGTGAVYTA--TTSASVWHRRLGHMNPRKMEVLRKKKGNGVEYTGTISGCDICSVTKSKQQAHPKESTRKTTRPMQLIYTDLMGPITPAAKGGHR---FVSKFTDDYSRMKEIYLLKNKPEAAESLHQYNMTVAVPLGLRIENLRCDKGGEYTGQEFRTLCVGTGTNIEYTATNTSQQNGVSERDGQILAKIT*CFMKDGDFPPFMWGELMFTATYLSNRSPHSTLEGATLYSKMHNMEPDLTGLRAIGARAFVHRETFTNKLEDRAFEGKLYGYSHNSKAYRIYNPAKGKVVESRNGTFLET 1323
            LVDSGASE+  D+ LIP+   R+ E +   TP+ I  AG+  L G  TGI+  TI D    QLPV ++ L+VPGL RNIFAP A L+ G+R VLE KT +LTI G  V+PLKQ+ +DQGMC+L ITF+ D                    GK E V  D    A  +   + SA +WHRRLGH+NP  ME+LR+    GV+Y G +S CD C +TK K+   PK+++R  T+P QL+  D MGPI P AK   R   +V+K TD ++RM+E+YLL+++ E  ++LH YNM VA   G RIE LRCDKGGE TG+E R  C  +   +E+ ATNT Q+ GVSERDGQ LA +T   ++DGDFP  MWGELM TA YL+NR+PH+ L GAT YSKM+N  PDL+ LRAIGARAFV+ E +  KL DRAFEGKL GY  +SK YRIY   K KV ESRN TF+ET
Sbjct:  380 LVDSGASETMFDNRLIPN--GRLEEERP--TPKIIDVAGESQLRGTTTGILHCTIEDDKEQQLPVKLQGLIVPGLGRNIFAPTALLKKGLRCVLEDKTPHLTIGGEVVVPLKQETQDQGMCTLAITFKGDPASTSKTPPNNQEPGRKPKFGKPEAVQIDHTLHATCSVAMSVSADLWHRRLGHINPSAMEILRRNPATGVKYDGPVSPCDNCQITKHKKAPVPKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVYLLRDRTETTQALHAYNMQVASE-GYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVYHERYKKKLVDRAFEGKLCGYGPDSKTYRIYVEGKDKVYESRNVTFIET 836          
BLAST of mRNA_P-littoralis_Contig1267.2.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 414 bits (1064), Expect = 1.660e-135
Identity = 211/397 (53.15%), Postives = 263/397 (66.25%), Query Frame = 1
Query:  130 LHGIGTGIISFTIRDTHGTQLPVNMRALVVPGLDRNIFA-----------PIAELRNGVRFVLEKKT-YLTIDGTVIPLKQDPRDQGMCSLDITFQRDSHGVLGKS----EGVSFDGGTGAVYTATTSASVWHRRLGHMNPRKMEVLRKKKGNGVEYTGTISGCDICSVTKSKQQAHPKESTRKTTRPMQLIYTDLMGPITPAAK---GGHRFVSKFTDDYSRMKEIYLLKNKPEAAESLHQYNMTVAVPLGLRIENLRCDKGGEYTGQEFRTLCVGTGTNIEYTATNTSQQNGVSERDGQILAKIT*CFMKDGDFPPFMWGELMFTATYLSNRSPHSTLEGATLYSKMHNMEPDLTGLRAIGARAFVHRETFTNKLEDRAFEGKLYGYSHNSKAYR 1263
            L G  TGI+  T++D  G QL V ++ L+VPGL RNIF+           P + L+ G+R V+E+ T +LTI   VIPL QDPRDQGMC+LDITF+++      KS    +  S      AV     SA  WHRRLGH+N R +++LRK  G GV+Y  ++S C +C + K KQ  HPK+STR+ +RP QL+  D MGP+ P AK   G   +  K TDDY++MKE+YLL+ K +  E++H YNM VA   G RIE +RCDKGGE TG EFR  C  +   +EY ATNT QQ G SERDGQ LA +T C +KDGDFPP MWGELM TA YL NRSPHS L GAT YSK+HN  PDL+GLR IGARAFVH E +  KL+DRAFEGKL G+  +S+ YR
Sbjct:  290 LKGTATGILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSSRTLLLGMDFSPTSLLKKGLRCVVEESTPHLTIQDKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYR 686          
BLAST of mRNA_P-littoralis_Contig1267.2.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 416 bits (1069), Expect = 1.640e-134
Identity = 225/458 (49.13%), Postives = 284/458 (62.01%), Query Frame = 1
Query:    1 LLVDSGASESFLDDELIPDLKSRMLEFKAFSTPREITTAGKHTLHGIGTGIISFTIRDTHGTQLPVNMRALVVPGLDRNIFAPIAELRNGVRFVLEK-KTYLTIDGTVIPLKQDPRDQGMCSLDITFQR-----------DSHGV-----LGKSEGVSFDGGTGAVYTATTSASVWHRRLGHMNPRKMEVLRKKKGNGVEYTGTISGCDICSVTKSKQQAHPKESTRKTTRPMQLIYTDLMGPITPAAKGGHRFVSKFTDDYSRMKEIYLLKNKPEAAESLHQYNMTVAVPLGLRIENLRCDKGGEYTGQEFRTLCVGTGTNIEYTATNTSQQNGVSERDGQILAKIT*CFMKDGDFPPFMWGELMFTATYLSNRSPHSTLEGATLYSKMHNMEPDLTGLRAIGARAFVHRETFTNKLEDRAFEGKLYGYSHNSKAYRIYNPAKGKVVESRNGTFLET 1323
            LL+D+GASE+ LDD LIP LK  M E K  + P+ ++  G H L G  TG+I  T++D++G +  V +R LVVPGL RN+F+  A+++NGV+ V+E+   +L + G  +PLKQDP D GMCS+DI FQ             SH +     +GK + V  D   G    AT +A+ WHR L H+N R ME+LRKK+ NGV+++ +++ CDIC+++KS+Q AHP+++ R+TT PMQL+YTD MG  TP AKGG  +VSKFTD YS MKEIYLLK   E   +LH YNM VA PLG RIE +RC+ GGE    EF    + +   IEY ATNT QQNGVSERDGQ L  IT   MKDG FPP +W E M TA YLSNR P STL G T Y KM+N     T L +                               SKAYRIYNPA G VVESRN TF+ET
Sbjct:  136 LLIDTGASENMLDDRLIPGLKEIMRESKELAKPKVVSVGGGHELDGNATGLIHCTVKDSNGEKKAVLLRGLVVPGLGRNVFSRAAQIKNGVKLVIEEGNPHLAVGGHTLPLKQDPLDMGMCSVDIEFQAASEQTTASTKPTSHALPDDRAIGKPDTVMLDDDLGVACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAYNMQVAAPLGRRIEIIRCESGGENVANEFTKYFMDSDITIEYAATNTPQQNGVSERDGQTLTTITRYLMKDGAFPPTLWREQMMTAEYLSNRPPRSTLGGVTPYFKMYNTARKRTCLAS-------------------------------SKAYRIYNPATGNVVESRNVTFIET 562          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1267.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVF6_9PHAE5.010e-14753.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3T5_9PHAE6.690e-14252.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8D4_9PHAE8.070e-14253.91Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5L1Z9_9PHAE1.070e-14152.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL01_9PHAE6.880e-14151.95Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KHG5_9PHAE2.580e-13852.38Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5KPR8_9PHAE1.260e-13650.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTQ0_9PHAE1.330e-13652.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT84_9PHAE1.660e-13553.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYD3_9PHAE1.640e-13449.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1267contigP-littoralis_Contig1267:9151..10473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog400682.PAC_15703055
PFAMsRVT_2
Model size1323
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.24e-28
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3ACW4@33154|Opisthokonta,3BVPH@33208|Metazoa
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size927
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789559.8154407-UTR-P-littoralis_Contig1267:9150..94771680789559.8154407-UTR-P-littoralis_Contig1267:9150..9477Pylaiella littoralis U1_48UTRP-littoralis_Contig1267 9151..9477 -
1680789559.8386483-UTR-P-littoralis_Contig1267:10404..104731680789559.8386483-UTR-P-littoralis_Contig1267:10404..10473Pylaiella littoralis U1_48UTRP-littoralis_Contig1267 10405..10473 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789559.8272374-CDS-P-littoralis_Contig1267:9477..104041680789559.8272374-CDS-P-littoralis_Contig1267:9477..10404Pylaiella littoralis U1_48CDSP-littoralis_Contig1267 9478..10404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1267.2.1prot_P-littoralis_Contig1267.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1267 9478..10404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1267.2.1

>prot_P-littoralis_Contig1267.2.1 ID=prot_P-littoralis_Contig1267.2.1|Name=mRNA_P-littoralis_Contig1267.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=309bp
MLEFKAFSTPREITTAGKHTLHGIGTGIISFTIRDTHGTQLPVNMRALVV
PGLDRNIFAPIAELRNGVRFVLEKKTYLTIDGTVIPLKQDPRDQGMCSLD
ITFQRDSHGVLGKSEGVSFDGGTGAVYTATTSASVWHRRLGHMNPRKMEV
LRKKKGNGVEYTGTISGCDICSVTKSKQQAHPKESTRKTTRPMQLIYTDL
MGPITPAAKGGHRFVSKFTDDYSRMKEIYLLKNKPEAAESLHQYNMTVAV
PLGLRIENLRCDKGGEYTGQEFRTLCVGTGTNIEYTATNTSQQNGVSERD
GQILAKIT*
back to top

mRNA from alignment at P-littoralis_Contig1267:9151..10473-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1267.2.1 ID=mRNA_P-littoralis_Contig1267.2.1|Name=mRNA_P-littoralis_Contig1267.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1323bp|location=Sequence derived from alignment at P-littoralis_Contig1267:9151..10473- (Pylaiella littoralis U1_48)
TTATTGGTTGACAGCGGTGCGTCGGAATCCTTCCTCGACGACGAGCTCAT CCCGGACCTCAAGAGTAGGATGCTAGAATTTAAAGCCTTTTCGACGCCGC GGGAGATCACGACAGCTGGAAAACACACCCTCCACGGCATCGGGACTGGC ATCATCTCCTTTACCATCCGCGACACCCACGGCACCCAGCTCCCAGTCAA CATGCGTGCGTTGGTGGTACCCGGACTCGACCGCAACATCTTTGCCCCAA TTGCTGAATTGAGGAATGGAGTTCGATTCGTACTGGAGAAAAAAACGTAC CTGACCATCGACGGCACCGTCATACCGCTTAAGCAGGATCCTCGAGATCA AGGGATGTGCTCGCTCGACATCACATTCCAGCGCGACTCCCACGGAGTAC TCGGCAAATCCGAGGGGGTTTCCTTCGACGGCGGGACTGGGGCCGTGTAC ACTGCTACAACCAGCGCCAGCGTGTGGCACCGTCGCCTGGGACACATGAA CCCTCGCAAGATGGAGGTACTTCGAAAAAAGAAAGGGAATGGAGTGGAGT ACACCGGGACTATCTCGGGCTGCGATATCTGCTCCGTGACCAAAAGCAAG CAACAAGCACATCCGAAGGAAAGCACACGAAAGACCACCAGACCTATGCA GCTCATCTACACGGACCTCATGGGACCAATCACACCAGCAGCGAAAGGAG GACACCGGTTCGTCAGCAAATTCACCGATGACTACTCGCGCATGAAGGAG ATTTACTTGCTCAAGAACAAGCCCGAGGCTGCCGAATCGCTACACCAGTA CAACATGACTGTGGCCGTCCCTCTAGGACTCCGAATCGAGAATCTGCGAT GCGACAAGGGTGGCGAGTATACTGGACAGGAGTTCAGGACCCTATGCGTC GGTACGGGGACTAACATCGAATATACCGCGACCAACACGTCACAGCAAAA CGGGGTATCCGAGAGAGATGGACAAATCCTGGCCAAGATCACCTGATGCT TCATGAAGGACGGAGACTTTCCCCCGTTCATGTGGGGAGAGCTGATGTTC ACGGCCACATACCTGTCCAATAGGTCTCCCCACTCCACTCTGGAAGGGGC CACCCTGTACTCCAAAATGCACAATATGGAGCCGGACCTCACTGGGTTGC GCGCTATTGGAGCCAGAGCATTCGTCCACCGAGAGACTTTCACCAACAAG CTGGAAGACAGGGCCTTCGAGGGAAAATTGTACGGATACAGCCACAACAG CAAGGCGTACCGCATCTACAATCCGGCCAAAGGAAAAGTCGTGGAGAGCC GGAACGGCACCTTCTTGGAAACG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1267:9151..10473-

>mRNA_P-littoralis_Contig1267.2.1 ID=mRNA_P-littoralis_Contig1267.2.1|Name=mRNA_P-littoralis_Contig1267.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=927bp|location=Sequence derived from alignment at P-littoralis_Contig1267:9151..10473- (Pylaiella littoralis U1_48)
ATGCTAGAATTTAAAGCCTTTTCGACGCCGCGGGAGATCACGACAGCTGG
AAAACACACCCTCCACGGCATCGGGACTGGCATCATCTCCTTTACCATCC
GCGACACCCACGGCACCCAGCTCCCAGTCAACATGCGTGCGTTGGTGGTA
CCCGGACTCGACCGCAACATCTTTGCCCCAATTGCTGAATTGAGGAATGG
AGTTCGATTCGTACTGGAGAAAAAAACGTACCTGACCATCGACGGCACCG
TCATACCGCTTAAGCAGGATCCTCGAGATCAAGGGATGTGCTCGCTCGAC
ATCACATTCCAGCGCGACTCCCACGGAGTACTCGGCAAATCCGAGGGGGT
TTCCTTCGACGGCGGGACTGGGGCCGTGTACACTGCTACAACCAGCGCCA
GCGTGTGGCACCGTCGCCTGGGACACATGAACCCTCGCAAGATGGAGGTA
CTTCGAAAAAAGAAAGGGAATGGAGTGGAGTACACCGGGACTATCTCGGG
CTGCGATATCTGCTCCGTGACCAAAAGCAAGCAACAAGCACATCCGAAGG
AAAGCACACGAAAGACCACCAGACCTATGCAGCTCATCTACACGGACCTC
ATGGGACCAATCACACCAGCAGCGAAAGGAGGACACCGGTTCGTCAGCAA
ATTCACCGATGACTACTCGCGCATGAAGGAGATTTACTTGCTCAAGAACA
AGCCCGAGGCTGCCGAATCGCTACACCAGTACAACATGACTGTGGCCGTC
CCTCTAGGACTCCGAATCGAGAATCTGCGATGCGACAAGGGTGGCGAGTA
TACTGGACAGGAGTTCAGGACCCTATGCGTCGGTACGGGGACTAACATCG
AATATACCGCGACCAACACGTCACAGCAAAACGGGGTATCCGAGAGAGAT
GGACAAATCCTGGCCAAGATCACCTGA
back to top