mRNA_P-littoralis_Contig1262.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1262.1.1
Unique NamemRNA_P-littoralis_Contig1262.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1262.1.1 vs. uniprot
Match: D7G7J9_ECTSI (Apt1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J9_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 6.070e-25
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 DVDNVHLKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVGRNFSNLGNFL 153
            DVDNVHLKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQV RNF+NLGNFL
Sbjct:  746 DVDNVHLKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVSRNFNNLGNFL 796
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BLAST of mRNA_P-littoralis_Contig1262.1.1 vs. uniprot
Match: A0A6H5KUC4_9PHAE (Apt1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUC4_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.130e-24
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 DVDNVHLKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVGRNFSNLGNFL 153
            DVDNVHLK+HPLVYTNKTWTPRKLLFRMRRDVILDVLSQV RNF+NLGNFL
Sbjct: 1234 DVDNVHLKIHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVSRNFNNLGNFL 1284
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BLAST of mRNA_P-littoralis_Contig1262.1.1 vs. uniprot
Match: I2CQJ8_NANGC (Apt1 domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQJ8_NANGC)

HSP 1 Score: 72.0 bits (175), Expect = 2.320e-15
Identity = 30/51 (58.82%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 DVDNVHLKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVGRNFSNLGNFL 153
            D++++HLK+HP++YTNKT + R+LL R+R+DV+LD+L QV RNF+NLG +L
Sbjct:   18 DLEHLHLKVHPIIYTNKTLSARELLARLRKDVVLDLLKQVNRNFANLGAWL 68
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BLAST of mRNA_P-littoralis_Contig1262.1.1 vs. uniprot
Match: H3GL85_PHYRM (Apt1 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GL85_PHYRM)

HSP 1 Score: 70.5 bits (171), Expect = 6.730e-13
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 DVDNVHLKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVGRNFSNLGNFL 153
            D+    +K H LVY++KT +P  LL RMRRD++LDVLSQVGRNF+N+GNFL
Sbjct:  353 DMRGFEVKTHALVYSDKTCSPMDLLLRMRRDILLDVLSQVGRNFTNIGNFL 403
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BLAST of mRNA_P-littoralis_Contig1262.1.1 vs. uniprot
Match: A0A6A3P1G4_9STRA (Apt1 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P1G4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.400e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 DVDNVHLKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVGRNFSNLGNFL 153
            D+    +K H LVY +KT +P  L+ RMRRD++LDVLSQVGRNF+N+GNFL
Sbjct:  729 DMRGFEVKTHALVYCDKTCSPLDLVMRMRRDILLDVLSQVGRNFTNIGNFL 779
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BLAST of mRNA_P-littoralis_Contig1262.1.1 vs. uniprot
Match: G4YWL2_PHYSP (Apt1 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YWL2_PHYSP)

HSP 1 Score: 68.2 bits (165), Expect = 4.400e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 DVDNVHLKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVGRNFSNLGNFL 153
            D+    +K H LVY +KT +P  L+ RMRRD++LDVLSQVGRNF+N+GNFL
Sbjct: 1273 DMRGFEVKTHALVYCDKTCSPLDLVMRMRRDILLDVLSQVGRNFTNIGNFL 1323
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BLAST of mRNA_P-littoralis_Contig1262.1.1 vs. uniprot
Match: A0A6G0M3Z4_9STRA (Apt1 domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M3Z4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.400e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 DVDNVHLKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVGRNFSNLGNFL 153
            D+    +K H LVY +KT +P  L+ RMRRD++LDVLSQVGRNF+N+GNFL
Sbjct: 1519 DMRGFEVKTHALVYCDKTCSPLDLVMRMRRDILLDVLSQVGRNFTNIGNFL 1569
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BLAST of mRNA_P-littoralis_Contig1262.1.1 vs. uniprot
Match: A0A662WI52_9STRA (Apt1 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WI52_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.230e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 DVDNVHLKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVGRNFSNLGNFL 153
            D+    +K H LVY +KT +P  LL R+RRD++LDVLSQVGRNF+N+GNFL
Sbjct: 2320 DMRGFEVKTHALVYCDKTCSPLDLLLRIRRDILLDVLSQVGRNFTNVGNFL 2370
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BLAST of mRNA_P-littoralis_Contig1262.1.1 vs. uniprot
Match: A0A485LBR3_9STRA (Aste57867_19007 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBR3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.100e-11
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   19 LKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVGRNFSNLGNFL 153
            LKLH LVYT+KT T   LL R+RRD++LD+LSQVGRNF+N+G FL
Sbjct: 2135 LKLHSLVYTDKTCTVSDLLLRVRRDILLDILSQVGRNFNNIGVFL 2179
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BLAST of mRNA_P-littoralis_Contig1262.1.1 vs. uniprot
Match: A0A3R6W6P9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6W6P9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.560e-11
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:   19 LKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVGRNFSNLGNFL 153
            LKLH LVYT+KT T  +L+ R+RRD++LDVLSQVGRNF+N+G FL
Sbjct:  232 LKLHSLVYTDKTCTLSELVLRVRRDILLDVLSQVGRNFNNIGIFL 276
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1262.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7J9_ECTSI6.070e-2596.08Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUC4_9PHAE1.130e-2494.12Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
I2CQJ8_NANGC2.320e-1558.82Apt1 domain-containing protein (Fragment) n=1 Tax=... [more]
H3GL85_PHYRM6.730e-1362.75Apt1 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A6A3P1G4_9STRA4.400e-1260.78Apt1 domain-containing protein n=4 Tax=Phytophthor... [more]
G4YWL2_PHYSP4.400e-1260.78Apt1 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A6G0M3Z4_9STRA4.400e-1260.78Apt1 domain-containing protein n=2 Tax=Phytophthor... [more]
A0A662WI52_9STRA8.230e-1260.78Apt1 domain-containing protein n=2 Tax=Nothophytop... [more]
A0A485LBR3_9STRA2.100e-1168.89Aste57867_19007 protein n=1 Tax=Aphanomyces stella... [more]
A0A3R6W6P9_9STRA2.560e-1168.89Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1262contigP-littoralis_Contig1262:11800..12582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000013285
PFAMsApt1
Model size153
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.24e-14
EggNOG OGsKOG1910@1|root,KOG1910@2759|Eukaryota,1MFUR@121069|Pythiales
Ec32 ortholog descriptionFMP27, C-terminal
Ec32 orthologEc-22_002130.1
DescriptionSource PGD
Cds size153
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789558.788856-CDS-P-littoralis_Contig1262:11799..118351680789558.788856-CDS-P-littoralis_Contig1262:11799..11835Pylaiella littoralis U1_48CDSP-littoralis_Contig1262 11800..11835 -
1680789558.8017886-CDS-P-littoralis_Contig1262:12465..125821680789558.8017886-CDS-P-littoralis_Contig1262:12465..12582Pylaiella littoralis U1_48CDSP-littoralis_Contig1262 12466..12582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1262.1.1prot_P-littoralis_Contig1262.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1262 11800..12582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1262.1.1

>prot_P-littoralis_Contig1262.1.1 ID=prot_P-littoralis_Contig1262.1.1|Name=mRNA_P-littoralis_Contig1262.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=51bp
DVDNVHLKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVGRNFSNLGNF
L
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mRNA from alignment at P-littoralis_Contig1262:11800..12582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1262.1.1 ID=mRNA_P-littoralis_Contig1262.1.1|Name=mRNA_P-littoralis_Contig1262.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=783bp|location=Sequence derived from alignment at P-littoralis_Contig1262:11800..12582- (Pylaiella littoralis U1_48)
GACGTCGACAACGTGCACCTCAAGTTGCACCCTCTCGTGTACACCAACAA
GACCTGGACACCTCGCAAGCTGCTCTTCAGAATGCGGAGGGACGTGATTC
TCGACGTTCTATCTCAGGTCTGCTGGTCGAATCCCGGAGTGAATCTGCTC
GACCTCGACGTTGTATCTATCCTATTTGTCTCTTTCTCCCTCTCACCCTC
TCTCCCTCTTTCCCTCTCTCTCTCTTAGGCCCTTTCAAGTGCGTCGGTAT
TATAATTTGGATGAGAAAATCTTGATGTACTGTACTAGGTACACATCGCG
GGTTTGGAGTTTATGGCATCCGAGGCGAAAACACGTTGGCGTTGCTACCT
CGCGCCCACCTGCTCGCGCAAAGCCCGGAGTATTTCCCTGAGATTCGCAG
AATCTTGCGGAAACGTCGTTTTTTTGTTGCGCGCTGCTTAGGGCGGGAAC
ACATCTGCACGTCGCCCTCGGCAGGTATACGTATGGTGACCCGGAACGGC
CGGACACCGAAAAGTAGGTAGGCCGGCTGGCTGCGGCGTCCCTGATGCGG
GCGCAAACTTCAATCTATTACGTTTCGAAGCCCAATCAACATCTGTCTAA
AGACCTCAGCTTTGCGCGCTTGGCGTCTACATACACTCCCGTATTGCATT
TTGTCAAAGTTTTTGTTTTAAAAAGCACCGCCCCCCTCCGACCGCGCGCC
TCAACCACCTCTGATGCTCGTTTTCCCCGGGGGTCGGACCCTCTCAGGTC
GGTCGCAATTTCAGCAATCTCGGCAACTTCCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1262:11800..12582-

>mRNA_P-littoralis_Contig1262.1.1 ID=mRNA_P-littoralis_Contig1262.1.1|Name=mRNA_P-littoralis_Contig1262.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=153bp|location=Sequence derived from alignment at P-littoralis_Contig1262:11800..12582- (Pylaiella littoralis U1_48)
GACGTCGACAACGTGCACCTCAAGTTGCACCCTCTCGTGTACACCAACAA
GACCTGGACACCTCGCAAGCTGCTCTTCAGAATGCGGAGGGACGTGATTC
TCGACGTTCTATCTCAGGTCGGTCGCAATTTCAGCAATCTCGGCAACTTC
CTC
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