mRNA_P-littoralis_Contig126.64.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig126.64.2
Unique NamemRNA_P-littoralis_Contig126.64.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig126.64.2 vs. uniprot
Match: D8LDV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV6_ECTSI)

HSP 1 Score: 339 bits (869), Expect = 1.360e-102
Identity = 202/261 (77.39%), Postives = 225/261 (86.21%), Query Frame = 2 
Query:    2 AVYRTLPAEVADELAYVPDQMILDFIFIKACPEFKTSAFDTAEKWEDLCRQTCIQAAYIRVAALWAEEEEEVLLMADARAEEAVRKEEAQLKRQREKEVKDADRDAAEMADLLANDPEAHMRRVVQKRADDADKRKREGKAKNQDDSVVNRKKEAXXXXXXXXXXXXXXXXXXXXXXXXQELNELADSDPAEYDRRIKAWHKRKIEGRDGTSSSLNAGDDGGGVDQTQNGDLERRKALARERRDARRAAMHARPSIGLPKK 784
            AV+RTLPAEVADELAYV DQMILDF+ IKACPE K SA DTAEKWE++CRQ CIQAAYIRVAALWAEEEEEV+LMADARAEE VRK EA+L++QRE+EVKDA++DAAEMA L+ANDPEAHMRRVVQKRADDAD+R+RE KAK++D SV N +++         XXXXXXXXXXXXXXX QELNELADSDPAEYDRRIK WHKRKIEGRDGTSSSL     G  VD T++GDLERRK+LARERR ARR AM  RPSIG+PKK
Sbjct: 3360 AVFRTLPAEVADELAYVHDQMILDFLMIKACPEVKASALDTAEKWEEVCRQICIQAAYIRVAALWAEEEEEVVLMADARAEEGVRKAEAKLRKQREQEVKDAEKDAAEMAHLMANDPEAHMRRVVQKRADDADRRRREAKAKDEDQSVANEERKTLENKKAMDXXXXXXXXXXXXXXXQQELNELADSDPAEYDRRIKEWHKRKIEGRDGTSSSLG----GDAVDHTESGDLERRKSLARERRSARRVAMQTRPSIGIPKK 3616
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig126.64.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDV6_ECTSI1.360e-10277.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig126contigP-littoralis_Contig126:258517..261770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LDV6
Model size898
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue3.44e-92
EggNOG OGs2CAM4@1|root,2S38S@2759|Eukaryota
Cds size735
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig126.64.2prot_P-littoralis_Contig126.64.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig126 258578..261668 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789556.0367372-UTR-P-littoralis_Contig126:258516..2585771680789556.0367372-UTR-P-littoralis_Contig126:258516..258577Pylaiella littoralis U1_48UTRP-littoralis_Contig126 258517..258577 +
1680789556.1273685-UTR-P-littoralis_Contig126:261668..2617701680789556.1273685-UTR-P-littoralis_Contig126:261668..261770Pylaiella littoralis U1_48UTRP-littoralis_Contig126 261669..261770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789556.046374-CDS-P-littoralis_Contig126:258577..2586041680789556.046374-CDS-P-littoralis_Contig126:258577..258604Pylaiella littoralis U1_48CDSP-littoralis_Contig126 258578..258604 +
1680789556.055178-CDS-P-littoralis_Contig126:258976..2590931680789556.055178-CDS-P-littoralis_Contig126:258976..259093Pylaiella littoralis U1_48CDSP-littoralis_Contig126 258977..259093 +
1680789556.0659788-CDS-P-littoralis_Contig126:259415..2595651680789556.0659788-CDS-P-littoralis_Contig126:259415..259565Pylaiella littoralis U1_48CDSP-littoralis_Contig126 259416..259565 +
1680789556.0792098-CDS-P-littoralis_Contig126:260246..2604081680789556.0792098-CDS-P-littoralis_Contig126:260246..260408Pylaiella littoralis U1_48CDSP-littoralis_Contig126 260247..260408 +
1680789556.0999143-CDS-P-littoralis_Contig126:260679..2609001680789556.0999143-CDS-P-littoralis_Contig126:260679..260900Pylaiella littoralis U1_48CDSP-littoralis_Contig126 260680..260900 +
1680789556.1170366-CDS-P-littoralis_Contig126:261610..2616681680789556.1170366-CDS-P-littoralis_Contig126:261610..261668Pylaiella littoralis U1_48CDSP-littoralis_Contig126 261611..261668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig126.64.2

>prot_P-littoralis_Contig126.64.2 ID=prot_P-littoralis_Contig126.64.2|Name=mRNA_P-littoralis_Contig126.64.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=245bp
MILDFIFIKACPEFKTSAFDTAEKWEDLCRQTCIQAAYIRVAALWAEEEE
EVLLMADARAEEAVRKEEAQLKRQREKEVKDADRDAAEMADLLANDPEAH
MRRVVQKRADDADKRKREGKAKNQDDSVVNRKKEALENKKAEDKERLARE
VKEKDTREQQELNELADSDPAEYDRRIKAWHKRKIEGRDGTSSSLNAGDD
GGGVDQTQNGDLERRKALARERRDARRAAMHARPSIGLPKKTKK*
back to top

mRNA from alignment at P-littoralis_Contig126:258517..261770+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig126.64.2 ID=mRNA_P-littoralis_Contig126.64.2|Name=mRNA_P-littoralis_Contig126.64.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3254bp|location=Sequence derived from alignment at P-littoralis_Contig126:258517..261770+ (Pylaiella littoralis U1_48)
GGCTGTGTACCGGACTCTACCGGCGGAAGTGGCCGACGAGCTGGCCTACG
TTCCCGACCAGATGATCCTCGACTTCATTTTCATCAAGGTGGTGTGGCAT
GGTTACGTTATTGTCGTATGAAGAGCAAAAAAGGCAGCAGCTAGCAGTAT
GATACCTCGGGCGTCTAAGGGGCTTAGCGAGAGAGGTGGCCTACATGTAT
TTGATACCAGTTCCAGAACAAATGTAGCGCAAGTTTTGATGTGGGTTATA
AGAAAATGTCGTGGTGGCTCCGAGAGTCCACTTTGAGGCACACCGCAAAA
CATCTATTGGTAGTTTTACCGTATGCCTGAGAATCTCTGCTCTCGCCTGC
CGGGCAGCAAACGCTTGCGCACCCGCCCTTTAGTAATGCATACTGTTGTG
GCGCTCTGCCGGTCGGCCGGTTGGTCGGTCTCTCTTCGATTTTTCTGCAT
ACCGCAACAGGCGTGCCCAGAATTCAAGACTTCCGCTTTCGACACGGCCG
AAAAATGGGAAGACTTGTGCAGGCAGACTTGCATACAGGCGGCATACATC
CGGGTGGCCGCCTTGTGGGCAGAAGAGGTGAGCATCAAAAGCATTCCCGA
AAGGACCCAATCAATCTAAGCGCGCACAAATGATATGCGGTGACCGTCGC
AGGCAGTTCCCGATTGACAGGCAGTTGTGGTGGCATGCAAAGTTGAATAT
TGTCCATGTGCAACACGAGAAGGTGCTCTCGCCAAATACTCCGTTCGTGC
CCATCTTCCTCAGCACGTCCATGTATATCCCGTACCAGCCGTGCTTGACT
AGCGGTACCTTCGACGCTCGCAAGCTATGCTCAACAATAGAGCAACGGTG
CCATGTTTGTAAGCCCTGCGTTCTTACACGATTTTGGTTGGCATGACAGG
AAGAAGAGGTCCTGCTGATGGCGGATGCGCGCGCCGAGGAGGCCGTGCGC
AAGGAGGAAGCGCAGCTTAAAAGGCAGCGGGAGAAGGAGGTCAAAGACGC
CGACAGAGATGCTGCGGAGATGGCTGATCTCCTGGCAAACGATCCAGAGG
TGCTACCTGTCGATACATTGTGCTTGGTCAATTCTTTTGATGGCCCACCA
GAGGGTTGAAGAGAGAGAGAAAAATAATTGAACCTAAGCGGTAGACCGTG
GGTGGCTATAACACAGAGATTCACGAGTCAAACAGTGATACAAGAAGCAG
AATACGTACGACGGGATACCGTGAGGATAGCTCTTGGGTTTCGCGCCACA
CCAGGGAAGGACGATCGTATGCTCATGCTCGTCTTCTCGAGGGTGTGTGA
AAAGCCAATTTGTTGAGAGGGAACGCTAAGCTGAGTCATTCTACTCGCAA
TAAGCGACCCGCCGAACGCTGCCATGTGAAAATTATCGACGGACGGTGGG
CACGGCTTCAGGCCGGCATGAAGTTGGGAGGCTACACTTTCAGGAGCGGG
CTGTCTACGGAGAAATCAACTCGAGACAAATAGCATCTCCACAGCGTCCC
CCGTGATCTCCCTCCGCCACCGCCCGGCGCTTTTAACTTGTCCGCCTCTC
GTCACTGCAATGTCTAAAGGTGTACGAAGCACAAGTTCTACCGCAAAATG
AGCAAGCTCTTCCTCTCCTTCGTGACCTCACGCGATGCTTGCTACTTTCA
TACCCCACCAATTACCGCATCTGTATTTATATCCTCTGACGGACAGAAAA
CACCAACTAAAATAAACAACCAAAATACAGGCCCACATGAGGAGGGTTGT
CCAGAAGCGAGCAGACGACGCGGACAAGCGGAAACGCGAGGGGAAGGCGA
AGAATCAGGACGACTCGGTGGTGAACAGAAAGAAAGAGGCTCTGGAGAAC
AAGAAAGCGGAGGACAAGGAGAGACTCGCAAGAGAAGTCAAGGTGAGCAC
CATGAGCAGCACCCCCGCGAAGAATTACAGCTTTCGCTTGTTCAAGATGA
TACTTCCCTCGCACACGCCTCTGTCTGTTTTACGTTGCGTCCCTTTCGCA
ATTTATCACCGAAGTCCAGCAGGAGAGCAACCCAGGACAACACGATTGCT
TGATGAGCAGCGGCATCCTCTTTATGCTTCTGGCGCCTCAGAAAGCTTGT
TCATCGATATACGTGTGCATACAAACCCCAAAATTTCTGCTCACTCCATC
CCATCACTTTCAGGAAAAGGACACGAGAGAGCAGCAAGAGCTGAACGAGC
TGGCAGACTCGGACCCAGCTGAGTACGACCGGCGGATCAAAGCGTGGCAC
AAGAGGAAGATCGAGGGAAGGGACGGGACCTCGAGCAGCCTCAACGCAGG
AGATGACGGCGGTGGCGTCGACCAGACGCAGAACGGTGATCTAGAGCGCA
GGAAGGCCCTAGCGCGCGAGAGAAGAGACGCCAGGTAAAGCGTATCCCAA
GGTGCTCACATGCCTGATATATGATACTTCGAAGTACTTCGTGTTCCATT
GCGAAGAGGTTTCTGATTGACACCATATGTTGCCCTTTGTGAACGTTTTT
GTGCTTTACTGTTTTGTGTTGATAAGAAGCGGTTTGCGCGGTTCTGCCGC
ACGAACAATTCAAAACCGCGAATGCGCTTTAGACTGCTACGACACCAAAG
GTTTCCACGATAGGCTGGTGGTCATGACGCTCATCAGTTATCAGGGACGA
GCATGGGGTCGTAGCAATCGAAAGGGAGGCAAACGTTTGAAGCGAAGAGG
CGTGTTATCGACATAAAATCTGGCTAGGCTCTTGTTGTCGATGATCAGGT
TTTTCAAATGTATCTGGAAAGAAAAGAACCCCCATCACCACGTTACGCTT
TTCTTCCACCACTCCTCAGTCATTCCCGACACACCCTTTCGAAACGACTG
TATGTTCCCTCTCTGCCCCCGTTCGCGTTGGGGATGCGACATTCTGGAAC
GTCATGTTTTGAAAGAATGTACCGTGCAGGCAGGTAGAATAATTTGACTG
CATTTGCTGCCTATTTTTTTCACCCTTCTCTCCCCCACGTCGGGGACTGT
ATGTACATGATTATGCCTGTATTGCACCAAATAAGATGCACCATATCTTC
TGTTCGTGCTTTTCGTTTTTTTTGTTCTTCTCTGTCAACAACAGGAGAGC
TGCGATGCACGCACGACCGTCGATCGGCCTGCCCAAGAAGACGAAGAAGT
AGTTAAGGGACGGATGGCACATTTTCCGATCGCGTGGCGAGTTTAATTAT
TTCGTACGTACGGCTGATGGGCGTTCTTCTCCTTCGGGAATCCAACAGCT
CCCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig126:258517..261770+

>mRNA_P-littoralis_Contig126.64.2 ID=mRNA_P-littoralis_Contig126.64.2|Name=mRNA_P-littoralis_Contig126.64.2|organism=Pylaiella littoralis U1_48|type=CDS|length=735bp|location=Sequence derived from alignment at P-littoralis_Contig126:258517..261770+ (Pylaiella littoralis U1_48)
ATGATCCTCGACTTCATTTTCATCAAGGCGTGCCCAGAATTCAAGACTTC
CGCTTTCGACACGGCCGAAAAATGGGAAGACTTGTGCAGGCAGACTTGCA
TACAGGCGGCATACATCCGGGTGGCCGCCTTGTGGGCAGAAGAGGAAGAA
GAGGTCCTGCTGATGGCGGATGCGCGCGCCGAGGAGGCCGTGCGCAAGGA
GGAAGCGCAGCTTAAAAGGCAGCGGGAGAAGGAGGTCAAAGACGCCGACA
GAGATGCTGCGGAGATGGCTGATCTCCTGGCAAACGATCCAGAGGCCCAC
ATGAGGAGGGTTGTCCAGAAGCGAGCAGACGACGCGGACAAGCGGAAACG
CGAGGGGAAGGCGAAGAATCAGGACGACTCGGTGGTGAACAGAAAGAAAG
AGGCTCTGGAGAACAAGAAAGCGGAGGACAAGGAGAGACTCGCAAGAGAA
GTCAAGGAAAAGGACACGAGAGAGCAGCAAGAGCTGAACGAGCTGGCAGA
CTCGGACCCAGCTGAGTACGACCGGCGGATCAAAGCGTGGCACAAGAGGA
AGATCGAGGGAAGGGACGGGACCTCGAGCAGCCTCAACGCAGGAGATGAC
GGCGGTGGCGTCGACCAGACGCAGAACGGTGATCTAGAGCGCAGGAAGGC
CCTAGCGCGCGAGAGAAGAGACGCCAGGAGAGCTGCGATGCACGCACGAC
CGTCGATCGGCCTGCCCAAGAAGACGAAGAAGTAG
back to top