mRNA_P-littoralis_Contig126.61.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig126.61.2
Unique NamemRNA_P-littoralis_Contig126.61.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig126.61.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig126contigP-littoralis_Contig126:223953..226945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFL2
Model size2318
Max annot lvl2880.D8LFL2|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.55e-05
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size1470
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789553.6066108-UTR-P-littoralis_Contig126:223952..2241251680789553.6066108-UTR-P-littoralis_Contig126:223952..224125Pylaiella littoralis U1_48UTRP-littoralis_Contig126 223953..224125 +
1680789553.6268172-UTR-P-littoralis_Contig126:225595..2256201680789553.6268172-UTR-P-littoralis_Contig126:225595..225620Pylaiella littoralis U1_48UTRP-littoralis_Contig126 225596..225620 +
1680789553.6370044-UTR-P-littoralis_Contig126:226295..2269451680789553.6370044-UTR-P-littoralis_Contig126:226295..226945Pylaiella littoralis U1_48UTRP-littoralis_Contig126 226296..226945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789553.6166384-CDS-P-littoralis_Contig126:224125..2255951680789553.6166384-CDS-P-littoralis_Contig126:224125..225595Pylaiella littoralis U1_48CDSP-littoralis_Contig126 224126..225595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig126.61.2prot_P-littoralis_Contig126.61.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig126 224126..225595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig126.61.2

>prot_P-littoralis_Contig126.61.2 ID=prot_P-littoralis_Contig126.61.2|Name=mRNA_P-littoralis_Contig126.61.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=490bp
MEGIVDKRKAQMCSHPCRTTRAKSGTIGTRRRVFCSQDMVDIRDNNRQRR
CGISSCGKTPSYGVAGSRRREFCLQHAKEGMINLNKKSQRCNHPGCDRGA
SYGAPGSRKREFCSQHAKEVMINIIDSKKCAHPDCGKAPTFGVAGSRKRE
FCSQHAKKGMISLSNNKSCDHPGCGKRPSYGAAGSRKLIFCSQHAEKGMV
GLNKSRRCGHPGCTTRAHFGVINSRTREFCSQHATTGMVNVNNDSQRCRD
PGCSTRASFGLNAGGRKREFCSQHAKEGMVVITKRQTCSHPDCRLGPSYG
VVGSRKREFCSQHAKEGMINLASKKCSHPSCSTEPSYGAAGSRKREFCSQ
HAKEGMVNLVSKKCGHSRCSKLSSFGAAGSRKREFCSQHAEEGTVSLLKK
KSRTCGEGPSSSGRGGRDKNGGIDARLADAGKNRKTHGASPALVEKAARE
EWRQKKGKQAHSNVKPEAIENEAMLRMIHPRRREKRRQR*
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mRNA from alignment at P-littoralis_Contig126:223953..226945+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig126.61.2 ID=mRNA_P-littoralis_Contig126.61.2|Name=mRNA_P-littoralis_Contig126.61.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2993bp|location=Sequence derived from alignment at P-littoralis_Contig126:223953..226945+ (Pylaiella littoralis U1_48)
GTCTGGTACACGGCACACAGCAGCAGTGGTCTGATTTGAACTGCTGGCTG
CTGGAGCACTGTGTGCAGACAAGATATATATCGACAAAGAAGACCCACAA
CTTTGTCGAGAACAGCAGTATCGGAGGGAGAGCAGTTGCTTTGTTCCTCA
GAGCAGAAAAAGAAAAGCACACTATGGAGGGAATTGTTGACAAAAGAAAA
GCCCAGATGTGCAGTCATCCTTGTCGCACAACCAGAGCAAAATCTGGCAC
AATTGGTACGCGAAGGCGCGTGTTCTGCTCGCAGGACATGGTTGACATCC
GAGACAACAACAGACAGAGGAGGTGCGGTATTTCAAGTTGCGGTAAAACC
CCGTCATACGGTGTAGCAGGTAGCCGGAGGCGTGAGTTCTGCTTGCAACA
CGCTAAGGAGGGGATGATCAACCTCAATAAAAAAAGTCAGAGGTGTAATC
ATCCTGGCTGCGATAGAGGGGCGTCATACGGTGCACCAGGTAGCCGAAAA
CGCGAGTTCTGCTCGCAGCACGCCAAGGAGGTAATGATCAATATCATCGA
CAGCAAGAAGTGTGCTCATCCTGACTGCGGCAAAGCGCCGACATTCGGTG
TAGCAGGGAGCCGAAAGCGCGAGTTCTGCTCGCAGCACGCCAAGAAAGGA
ATGATCAGCCTCAGCAACAACAAGAGTTGCGATCATCCAGGCTGCGGCAA
AAGACCGTCGTACGGTGCAGCAGGAAGCCGAAAGCTCATATTCTGCTCGC
AGCACGCGGAGAAGGGGATGGTTGGCCTCAACAAAAGCCGGAGGTGTGGT
CATCCGGGATGCACCACCAGGGCACATTTCGGCGTGATCAATAGCCGAAC
GCGCGAGTTCTGCTCACAACACGCCACGACAGGAATGGTCAATGTTAACA
ACGACAGCCAGAGGTGCAGGGATCCGGGCTGTAGCACCAGGGCAAGCTTC
GGCTTGAACGCCGGTGGCCGAAAGCGTGAGTTCTGCTCGCAACACGCCAA
GGAGGGAATGGTTGTAATCACCAAACGCCAGACGTGCAGTCATCCCGATT
GCAGGTTAGGACCGTCATACGGTGTAGTAGGCAGTCGAAAGCGCGAGTTC
TGCTCGCAGCACGCGAAGGAGGGCATGATTAACCTCGCCAGTAAGAAATG
CAGCCATCCGAGCTGCAGTACGGAGCCATCATACGGTGCAGCAGGCAGCC
GAAAGCGCGAGTTCTGCTCGCAGCACGCTAAGGAGGGAATGGTTAATCTC
GTCAGCAAGAAGTGCGGCCATTCACGCTGCAGCAAGTTGTCGTCATTCGG
TGCAGCAGGCAGCCGGAAGCGCGAGTTCTGCTCACAGCACGCCGAGGAGG
GAACAGTCAGTCTCCTCAAGAAGAAGAGCCGGACCTGCGGCGAGGGTCCA
TCCAGCAGCGGACGTGGAGGTCGCGATAAGAACGGAGGTATCGATGCGCG
GCTGGCCGATGCGGGTAAAAACCGTAAGACACACGGTGCTTCACCTGCGC
TGGTCGAGAAGGCAGCCAGGGAAGAATGGAGACAGAAGAAGGGGAAACAA
GCCCACTCGAACGTGAAACCCGAGGCGATTGAAAATGAAGCGATGCTGCG
AATGATTCATCCTCGGAGACGGGAAAAACGCAGGCAGCGGTGAAGATCGA
GACGTTTGTGGTCCCCAGGTGCTTGTTGATGAAAATATTCGGAGAGTGGC
ATGCAGGAAGTTCTTTCAAACGATATAGATTGTGATTCGGAAAGTCGTTG
AGCTGTGGCAGTTCAAGCAGGCTGGTCCTTGCTGGGCAATTCGACTGCTT
TCGTTTTTTTTTTGCAGTCTAAGCGCCAATGCATTGTTTTGCTCACTCGA
AAAGATAAGTAGATGTCCAATTCGTGCCGAACACTAGAGAAGTACCAGGT
ATATTTGCGCACTCGAAAAGATAAGTAGATATGTATACCGTGCCGAAGCA
CTTAAAGAAGTACCAGGTATAGAGCGACTCGCCGAAGTGTTCGAGTCGGG
CTTGTGTTTCAGACGTGCATTAAAAGTATGGTCTGAAGTTTCGTGGACAC
ATGATGATCTATTTTTGGGTGCTACCAAGCACGGCGCTATTATTGATTGA
CTCGTCGTGCTGGGAGGAGTCTTGTTTTCGCGTAGAAATGCAGACAGCCC
ATTATCTTTAGCAAGGCTTGCCGTCATACAGGCGTTTGTTGTACATACTC
AGGAATTTGACTTTGTGCACAAACATACCTCTTAGTTGGTTGCACATCGC
TATTTGTGTTTGTTCGGTGTTTCCCGTTTGCTCTGAATATATCCCGATTC
TCCAACTTTGCGCCGCTGTCCAACAACGGCCAATCCCTTCTAGGCGACAA
CGGAGGAAGCAGGACCGGGCTGAAGCACCACTGCGCTCTTGAGACGGCAA
CGCTGATTTTAGTCGTGCGTGGTGCGTTACGAAGGCCCCACCACCTACGA
CGATGGATGTATTACCCGATATACCGCAGGCATACTACGATGTTCCCTGG
AAGTCGCAGTTTTGGTGCGGTGGCGCTGCTACTGTGGAATATTACAGATG
AGTCGTCTCTATCGTTCGCCTCTCTACGCACGCGTGTGCGCGGCGGTCGT
ATTTGAGGCTTATCCGTTCTGTTCTGAATTTGTTATTTTCCCTGTGTCGT
GTAATGTGTTCATCCTGTGTAGAACGGTTGGCAGCAAGACTTGGTGCATT
CTACGCTCCTGTTCCACACGTCTACTGCTGTAGTTTCGATTGCGTGTTTC
CTTCTGCAGTACTCATGTAGCCCCCCAGCATCCTTGCTGTTGATCGCTTG
TTGTTGTCGGTTCGGCACAAGAACTTATGAAAGCGTAGAGGCCTGGCCCT
GTTTGTAACCACGGGGACTTGCTAGTTGCCAAAGCCGTTTGGTTTGGCAC
TCAGATAGCTTTTTTTTTTTTCCTGTAGAGAATGTCAAGATCTCCATGTG
AATTGTTCGTTGCACTGCGAAAGAATATGCCAACATTTTTCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig126:223953..226945+

>mRNA_P-littoralis_Contig126.61.2 ID=mRNA_P-littoralis_Contig126.61.2|Name=mRNA_P-littoralis_Contig126.61.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1470bp|location=Sequence derived from alignment at P-littoralis_Contig126:223953..226945+ (Pylaiella littoralis U1_48)
ATGGAGGGAATTGTTGACAAAAGAAAAGCCCAGATGTGCAGTCATCCTTG
TCGCACAACCAGAGCAAAATCTGGCACAATTGGTACGCGAAGGCGCGTGT
TCTGCTCGCAGGACATGGTTGACATCCGAGACAACAACAGACAGAGGAGG
TGCGGTATTTCAAGTTGCGGTAAAACCCCGTCATACGGTGTAGCAGGTAG
CCGGAGGCGTGAGTTCTGCTTGCAACACGCTAAGGAGGGGATGATCAACC
TCAATAAAAAAAGTCAGAGGTGTAATCATCCTGGCTGCGATAGAGGGGCG
TCATACGGTGCACCAGGTAGCCGAAAACGCGAGTTCTGCTCGCAGCACGC
CAAGGAGGTAATGATCAATATCATCGACAGCAAGAAGTGTGCTCATCCTG
ACTGCGGCAAAGCGCCGACATTCGGTGTAGCAGGGAGCCGAAAGCGCGAG
TTCTGCTCGCAGCACGCCAAGAAAGGAATGATCAGCCTCAGCAACAACAA
GAGTTGCGATCATCCAGGCTGCGGCAAAAGACCGTCGTACGGTGCAGCAG
GAAGCCGAAAGCTCATATTCTGCTCGCAGCACGCGGAGAAGGGGATGGTT
GGCCTCAACAAAAGCCGGAGGTGTGGTCATCCGGGATGCACCACCAGGGC
ACATTTCGGCGTGATCAATAGCCGAACGCGCGAGTTCTGCTCACAACACG
CCACGACAGGAATGGTCAATGTTAACAACGACAGCCAGAGGTGCAGGGAT
CCGGGCTGTAGCACCAGGGCAAGCTTCGGCTTGAACGCCGGTGGCCGAAA
GCGTGAGTTCTGCTCGCAACACGCCAAGGAGGGAATGGTTGTAATCACCA
AACGCCAGACGTGCAGTCATCCCGATTGCAGGTTAGGACCGTCATACGGT
GTAGTAGGCAGTCGAAAGCGCGAGTTCTGCTCGCAGCACGCGAAGGAGGG
CATGATTAACCTCGCCAGTAAGAAATGCAGCCATCCGAGCTGCAGTACGG
AGCCATCATACGGTGCAGCAGGCAGCCGAAAGCGCGAGTTCTGCTCGCAG
CACGCTAAGGAGGGAATGGTTAATCTCGTCAGCAAGAAGTGCGGCCATTC
ACGCTGCAGCAAGTTGTCGTCATTCGGTGCAGCAGGCAGCCGGAAGCGCG
AGTTCTGCTCACAGCACGCCGAGGAGGGAACAGTCAGTCTCCTCAAGAAG
AAGAGCCGGACCTGCGGCGAGGGTCCATCCAGCAGCGGACGTGGAGGTCG
CGATAAGAACGGAGGTATCGATGCGCGGCTGGCCGATGCGGGTAAAAACC
GTAAGACACACGGTGCTTCACCTGCGCTGGTCGAGAAGGCAGCCAGGGAA
GAATGGAGACAGAAGAAGGGGAAACAAGCCCACTCGAACGTGAAACCCGA
GGCGATTGAAAATGAAGCGATGCTGCGAATGATTCATCCTCGGAGACGGG
AAAAACGCAGGCAGCGGTGA
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