mRNA_P-littoralis_Contig126.108.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig126.108.1
Unique NamemRNA_P-littoralis_Contig126.108.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig126.108.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 4.720e-48
Identity = 80/111 (72.07%), Postives = 100/111 (90.09%), Query Frame = 1
Query:   94 LFFHGNFGRSEYARKKGLDKKAGHITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRH 426
            +++ GNFGRSEYAR+ GLDK+AG+I+SADDSKLEEL++++RFF+KWR +L+EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N R+
Sbjct:  546 MWWSGNFGRSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFINQRN 656          
BLAST of mRNA_P-littoralis_Contig126.108.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 5.810e-42
Identity = 72/106 (67.92%), Postives = 84/106 (79.25%), Query Frame = 1
Query:  106 GNFGRSEYARKKGLDKKAGHITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPR 423
            GNFGRS+YARK GLDK  G+  SADDSKLE LMDILRFF++WR +LE + T+GD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+    D P ++N R
Sbjct:   37 GNFGRSDYARKNGLDKMVGYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFINLR 140          
BLAST of mRNA_P-littoralis_Contig126.108.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 8.530e-38
Identity = 69/111 (62.16%), Postives = 85/111 (76.58%), Query Frame = 1
Query:  109 NFGRSEYARKKGLDKKAGHITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRHHCQVS 441
            NFGRS+YARK GLDK   +I SADDSKLEE+MDIL  F++WR +LE + T+GD  WK HFIT++SWTDIRV ILG VSMCRY+FE+DS FK+    D P ++N R+  Q S
Sbjct:  428 NFGRSDYARKNGLDKMVSYIRSADDSKLEEVMDILLLFDEWRASLEARPTLGDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSDVPHFINLRYIGQAS 538          
BLAST of mRNA_P-littoralis_Contig126.108.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.720e-30
Identity = 55/78 (70.51%), Postives = 65/78 (83.33%), Query Frame = 1
Query:  106 GNFGRSEYARKKGLDKKAGHITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFV 339
            GNFGRS+YARK GLDK  G+I SADDSKLEELMDILRFF++WR +LE + T+G   WK +FIT++SWTDIRV ILG V
Sbjct:   24 GNFGRSDYARKNGLDKMVGYIRSADDSKLEELMDILRFFDEWRASLEARPTLGGRAWKAYFITDHSWTDIRVCILGTV 101          
BLAST of mRNA_P-littoralis_Contig126.108.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.200e-27
Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = 1
Query:   91 VLFFHGNFGRSEYARKKGLDKKAGHITSADDSKLEELMDILRFFEKWRCNLEEK---TTVGD-VTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKV-SRPRDTPRYVNPRHHCQVSCAH 450
            V  F+GN+GRS+  RK G  K  G I S + + ++ L++IL FF+ W+  LE K   +  GD + WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++ S   +  R+++PR+  Q  C H
Sbjct:   60 VDIFNGNYGRSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEH 184          
BLAST of mRNA_P-littoralis_Contig126.108.1 vs. uniprot
Match: A0A6H5JZW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW9_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.870e-27
Identity = 50/76 (65.79%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  160 GHITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVS 387
            G+I S DDSKL+ELMDIL FF++WR +LE + T+GD  WK HFIT++ WTD RV ILG V MCRYL E DSRFK+S
Sbjct:    3 GYIRSTDDSKLDELMDILWFFDEWRASLEARPTLGDGAWKAHFITDHLWTDSRVCILGTVRMCRYLIEKDSRFKIS 78          
BLAST of mRNA_P-littoralis_Contig126.108.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.250e-19
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 1
Query:  103 HGNFGRSEYARKKGLDKKAGHITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 369
            +G +G +E  RK+G +K+ G+IT AD   L  L++IL FF+ W+ +LE     G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+
Sbjct:  473 NGVYGLNEVERKQGGNKRKGYITGADSPLLGRLLEILEFFDSWQVSLEAH--FGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDE 559          
BLAST of mRNA_P-littoralis_Contig126.108.1 vs. uniprot
Match: A0A6H5JNK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK0_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.600e-18
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  160 GHITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVS 342
            G+I SAD SKLE LMDILRFF++WR +LE + T+GD TW+ HFIT++SWTDI+V ILG V+
Sbjct:    3 GYIRSADRSKLE-LMDILRFFDEWRASLEARPTLGDGTWEAHFITDHSWTDIQVCILGTVA 62          
BLAST of mRNA_P-littoralis_Contig126.108.1 vs. uniprot
Match: A0A6H5K095_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K095_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.400e-14
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1
Query:  157 AGHITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYS 303
            AG+I SADDSKLEELMDILRF  +WR +LE ++T+GD  WK HFIT++S
Sbjct:    2 AGYIRSADDSKLEELMDILRFLGEWRASLEARSTLGDCAWKAHFITDHS 50          
BLAST of mRNA_P-littoralis_Contig126.108.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.580e-5
Identity = 30/86 (34.88%), Postives = 48/86 (55.81%), Query Frame = 1
Query:  112 FGRSEYARKKGLDKKAGHITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 369
            + R      K +D +   ITS D   L+ L++IL +F+ W  +L       D+     F+ + +W D+R++ILGFV+M RY+F DD
Sbjct:  493 YNRDPIDVSKRIDIRKSCITSKDSPLLDRLLEILEWFDTWWQDLN-LFGGSDLALDDLFLPDQTWDDLRLTILGFVAMTRYVFGDD 577          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig126.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE4.720e-4872.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE5.810e-4267.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE8.530e-3862.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH17_9PHAE1.720e-3070.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE2.200e-2748.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZW9_9PHAE2.870e-2765.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.250e-1949.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK0_9PHAE4.600e-1865.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K095_9PHAE3.400e-1467.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE1.580e-534.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig126contigP-littoralis_Contig126:498421..501751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size663
Hectar predicted targeting categoryother localisation
Exons2
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789558.0583324-CDS-P-littoralis_Contig126:498420..4985261680789558.0583324-CDS-P-littoralis_Contig126:498420..498526Pylaiella littoralis U1_48CDSP-littoralis_Contig126 498421..498526 +
1680789558.0697951-CDS-P-littoralis_Contig126:501196..5015611680789558.0697951-CDS-P-littoralis_Contig126:501196..501561Pylaiella littoralis U1_48CDSP-littoralis_Contig126 501197..501561 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789558.080998-UTR-P-littoralis_Contig126:501561..5017511680789558.080998-UTR-P-littoralis_Contig126:501561..501751Pylaiella littoralis U1_48UTRP-littoralis_Contig126 501562..501751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig126.108.1prot_P-littoralis_Contig126.108.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig126 498421..501561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig126.108.1

>prot_P-littoralis_Contig126.108.1 ID=prot_P-littoralis_Contig126.108.1|Name=mRNA_P-littoralis_Contig126.108.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=157bp
TKHATTATPTSDLPAVRATISTRETLCQGRVLFFHGNFGRSEYARKKGLD
KKAGHITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEY
SWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRHHCQVSCAH
SVLCCG*
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mRNA from alignment at P-littoralis_Contig126:498421..501751+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig126.108.1 ID=mRNA_P-littoralis_Contig126.108.1|Name=mRNA_P-littoralis_Contig126.108.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3331bp|location=Sequence derived from alignment at P-littoralis_Contig126:498421..501751+ (Pylaiella littoralis U1_48)
ACCAAGCACGCGACGACCGCGACGCCAACTTCTGATCTACCTGCTGTACG CGCTACCATCAGTACGAGGGAGACTCTGTGCCAGGGCAGAGTTTTGTTTT TTCACGGTGAGTCTTGTTGTCATGACCGTCCTCAGGGCAGCACCCCGGGG TAGTTCCCTACCGAATTCCGACTACCCTCGACGTCGCAGGCACTAGCGTC TCGCCCACCAAGGAGGTTAGTCTCATACACCCGGTGCCGTCAGTACATGT CTCAGGCTCTCTTGGATAGAAGTCCGTTTGGAAATCGGACTTGTGTAGGC AGACTTCTCTCCAAAATGCGGACAAGAATCTCACCGTGTCGAGAGGACCC TGAGCGTTCGCCAGAAGCAGGTTGAAAAACAATGCAGGAAAAATGGAAAA ATTATTTTTGAAAAATCAACACACAGCCCATGGCGTGCAATCACCACCGC GCAGTACGCCAGAGCACGCCTCGTGCCTGCGGGTGAACAGAAAATGCTGT GGGTTACCAGAATGCCGTCGGCTTCAGCTTTGGTGCTGTGTTGTGTATCG GTGACGAGTCACTTTGTAGCAGGGAATTGTTGGCTAGGTAATCTGTAATC TGTAATCTGCCATCGCTTCTGCGCCAGAGACAAAACACCATACAGACTTG AACAGACAGATCCTTCGAGATTATCTCTTCCCACACAAAGCCGTTATCGT CCGTTCACACGCGGGTGTGCTTGCCCACCATAGATTTATAGCGTACCTTC GGGACCGCACGCTTCCCAGTGCTGCGCACCGGTTTAAGGGAGCGCACCTT CCGAACACCGTTCTGGCTGCTGTGAGGGCCGAAGAAGACACAACATAACA ATCTAAAACACCTCAGCTGTAGTGTGCTGTGTTGGCTGTCGAATGAGCCC TGGTTTGTCGAGTTAGGCGGCCTGTGGCCCTCAAATGTGACGAAAGAAAA AATCGAAGTCCGGCGGCAAATAGGCTGCAGTTTTGTGCGGCGCAACCTCT CGCGGGTGCAGAGGCTGCATTTCACCCGAGTACGAGAACGCATAGCACAC AGCACAGATCCGTACGAAAGTTGGCACATGGGCTCAACATACAACTAGGG GGTAGTTTGCAAGAAGACGTACTCGATGTTTCGCGCGCGAGTGGTTTCAT ACTTTCCACCACTATTAATAGCTGGTACTTTGCTTGCATGATTTGCACCC TTGTTTTGGCGAGCGTTAAAGGCTGTATTTCAGCTGTTGTTTTTGTCACA TTGAAAACTGTTCCGTTCTCTCTATCCAGTACCTCCAACTGTCCGTGCTC TTCCAACACTTGCGTCGGGCGATTCCCGTGGTCACAAGCTAACTACCCTA AGAAGAGGTATTCTGAAATAAAACACAATAAAAAACGGACCACGGAGCCG AAAGATCAGCAAAGCGGTAGAAAGAAGCAGCAGAAGCATATTTAAAATAT AACTCAACGCATGCCGTGCTCAAGAGACGGGGAATGGACGGGGAGTTTGT GCATCTTAGGCGATAGGTGTCTCAATGGCAATCAGGTATAACCTCTTGTC GCATGAACACATGTGCATGCCTATTCATAAAAGCCGATGAATTTCGAATA GTTCCCATTTTATATCGTTCACACCGCAACGGCTACCGACAGGCTGCCGT CGATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCG CACACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGC TCCGAGACCACGAGTAAGCCTACTTCACCATAGAGTCCGGGGTGGGGGTG GCGGAGCATCTCTCCACCGTGAAGTAATGTTGTTGAGGAACACACAGAGT TCCTCATAGCTTTTTTAATAGGTGTCCCGCGTAGCACTAGCGTCGAGGGT TGATGCCTTCATCGACATCTTCAACGGCAAGTGATAGGTGTTCGTATTGT CGCAGTATGTAGAGGGGCCTGTCGCGTGACTATGTTCCGTGCTCTCCTTT TTCCCCTGAAGTTTCCCGGCACCCGGGTACACTCTTTCTCTATACAGGGG GGATTGTTCCGAAGTCCGGAAATACCGGCAAACGCCCTGTCTCCCGGCGC AGCTCGTGACGGAGATTTTTTTTTAGCTTGATTGTTGAGTTTTCATGGGC TAAAAACCCGCCACACTTGTGTTCTAACGGGATTGAACAAATATCGTAAT TTGCCAATATAATCGCTTATTATTGTTTTCAAATAAGTCTCTTAAACAGA GATATCGCACCAAAACAGCACATCGACGACCAATATACTGTTTTATTCGA GACAACTATTCTTTCGATTTCAAAATAGACTGCGGCAAACTATTCCTCTC ATCATTGCCGCGAACTGTTTGTGGCGTTGTTGGTGGTGGTGCAGGGGGTG GTGTTTGTGTCGTTTTTGTGTGATAAAATGTGCTGTGTAATGGCTGCAAT GGATAGATTTCATGACATGGTATGCGGATGCCGGGGTGCGGAGTGCAGGA TGGGGGCTCAGTGGTGAGTTTTGGGGCCCCGTGGAACGATTCTCGCAACA AATGATGCAATTAGCCAAAAACATAAATAACTCTGCAGCTACGTATCGAC ATATCTCGACGAGGCGATCACTAATATTGTTTCACGTCCCAATGCGATTG AACAAAAAGGAGAGCACGGACCTACTTGTTTTTTTTTATATATTTCCTCG CGCAATGTACACACTCTGTGCGCGTCGTTTGTCTCTTCCCACACGGCCCC ATGTATGTGTACGTGTATATATTCAGGAAACTTCGGCCGCTCGGAGTACG CGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCCACATTACATCGGCCGAC GACTCCAAACTAGAAGAACTCATGGACATCTTGCGTTTTTTCGAGAAGTG GCGGTGCAATCTGGAGGAGAAGACGACGGTGGGCGACGTCACCTGGAAGA AGCACTTCATCACGGAGTACTCGTGGACCGACATCCGGGTGTCCATCCTT GGCTTCGTCAGTATGTGCCGATACTTGTTCGAGGATGATTCGAGGTTCAA GGTCTCCCGCCCGCGCGACACGCCCCGCTACGTCAACCCGCGGCACCATT GCCAGGTATCATGTGCACACAGCGTACTATGTTGTGGCTGATTCTGCCTG TGGGTCTAGTGTGCGTCCGGTCCGACTCCGAGGAGCATTTTCTGAAATTG CGTCGACCTCTCCCCCCTGTTTTCCACCACTTCGCCTTCTAACCCCACAG GATGTCGTGGAGAACCGCTTCGGGCACATGCGCGACGGCCTCGGGTCGCA CAGAAACCCGACGGCTACGCAAGCGAAGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig126:498421..501751+

>mRNA_P-littoralis_Contig126.108.1 ID=mRNA_P-littoralis_Contig126.108.1|Name=mRNA_P-littoralis_Contig126.108.1|organism=Pylaiella littoralis U1_48|type=CDS|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig126:498421..501751+ (Pylaiella littoralis U1_48)
ACCAAGCACGCGACGACCGCGACGCCAACTTCTGATCTACCTGCTGTACG
CGCTACCATCAGTACGAGGGAGACTCTGTGCCAGGGCAGAGTTTTGTTTT
TTCACGGAAACTTCGGCCGCTCGGAGTACGCGCGCAAGAAAGGCCTCGAC
AAGAAAGCGGGCCACATTACATCGGCCGACGACTCCAAACTAGAAGAACT
CATGGACATCTTGCGTTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGA
AGACGACGGTGGGCGACGTCACCTGGAAGAAGCACTTCATCACGGAGTAC
TCGTGGACCGACATCCGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCG
ATACTTGTTCGAGGATGATTCGAGGTTCAAGGTCTCCCGCCCGCGCGACA
CGCCCCGCTACGTCAACCCGCGGCACCATTGCCAGGTATCATGTGCACAC
AGCGTACTATGTTGTGGCTGA
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