mRNA_P-littoralis_Contig1257.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1257.1.1
Unique NamemRNA_P-littoralis_Contig1257.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1257.1.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 7.710e-28
Identity = 94/218 (43.12%), Postives = 119/218 (54.59%), Query Frame = 3
Query:    6 LAQRAMRLVALNQVRDKKVYRIKLTAGVDMAEGSTRQQVWYSKGIKYPKGGKSNRHWVAEADFAKSWRPSRERVGGDSSVDDARASMDAHQDAAPSREKRPRVCQQNSQDPXXXXENR-GGAREGSGRPKGSYGPERMRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRPYLKSQANKGVGRKSAIRKLAKKRSQWENAATA 656
            LAQR   LV++ Q +  K YR++LTA V  +E     Q W S  IK PKG  + R W AE  FA +WRPS     G+    DA A      +AAP REKRPR C+  +         + GGAR GSGRPKGSYG +R+R    +   ++  G    A  A+RD+    ML A   V  +       +LK Q+N+GVGRK A+RKLAK RSQ E AA A
Sbjct:   25 LAQRGGELVSVRQEKSPKKYRVELTAHVHGSE-----QRWCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFS--SGNVPHTDASA---GEAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPG-DMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAA 231          
BLAST of mRNA_P-littoralis_Contig1257.1.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.260e-27
Identity = 94/218 (43.12%), Postives = 119/218 (54.59%), Query Frame = 3
Query:    6 LAQRAMRLVALNQVRDKKVYRIKLTAGVDMAEGSTRQQVWYSKGIKYPKGGKSNRHWVAEADFAKSWRPSRERVGGDSSVDDARASMDAHQDAAPSREKRPRVCQQNSQDPXXXXENR-GGAREGSGRPKGSYGPERMRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRPYLKSQANKGVGRKSAIRKLAKKRSQWENAATA 656
            LAQR   LV++ Q +  K YR++LTA V  +E     Q W S  IK PKG  + R W AE  FA +WRPS     G+    DA A      +AAP REKRPR C+  +         + GGAR GSGRPKGSYG +R+R    +   ++  G    A  A+RD+    ML A   V  +       +LK Q+N+GVGRK A+RKLAK RSQ E AA A
Sbjct:   25 LAQRGGELVSVRQEKSPKKYRVELTAHVHGSE-----QRWCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFS--SGNVPHTDASA---GEAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPG-DMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAA 231          
BLAST of mRNA_P-littoralis_Contig1257.1.1 vs. uniprot
Match: D7G0B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B2_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 7.990e-17
Identity = 58/132 (43.94%), Postives = 73/132 (55.30%), Query Frame = 3
Query:  123 WYSKGIKYPKGGKSNRHWVAEADFAKSWRPSRERVGGDSSVDDARASMDAHQDAAPSREKRPRVCQQNSQDPXXXXENRGGAREGSGRPKGSYGPERMRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAA 518
            WYS+ + YP+  K  R WVAE +FAK+WRPS        S  DAR   +  + A P REKRPR CQ            R  AREG GRPKGS+G +R+R LLH+ +  +  G    A    RD+ +A MLAA
Sbjct:    8 WYSEYMGYPESNKKARDWVAEENFAKAWRPSHSSGSAVLSKADARLRSE-DKPALPPREKRPRDCQPTCSAIHTPPAKRA-AREGEGRPKGSFGRKRLRALLHQYKVQVEQGQLTFARLQLRDLGSA-MLAA 136          
BLAST of mRNA_P-littoralis_Contig1257.1.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.740e-13
Identity = 50/101 (49.50%), Postives = 65/101 (64.36%), Query Frame = 3
Query:  357 RGGAREGSGRPKGSYGPERMRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRP-YLKSQANKGVGRKSAIRKLAKKRSQWENAATA 656
            RGGAR G+GRPKGSYG +R+R    +   +L  G  Q A   +RD+  A  ++ AV   +   E+ RP +LK Q+N+GVGRK A+RKLAK RSQ E AA A
Sbjct:  139 RGGARPGAGRPKGSYGRKRLRQAAQQLNYYLERGQLQCAQMVSRDLPGA--MSYAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAVA 237          
BLAST of mRNA_P-littoralis_Contig1257.1.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.230e-13
Identity = 54/128 (42.19%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  279 DAAPSREKRPRVCQQNSQDPXXXXEN-RGGAREGSGRPKGSYGPERMRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRP-YLKSQANKGVGRKSAIRKLAKKRSQWENAATA 656
            +  P REKRPR CQ  ++         RGGAR G+GRPKGSYG  R+R    +   +L  G  Q A   +RD+  A +   AV   +    + RP +LK Q+N+G+GRK A+RKLAK +SQ +  A A
Sbjct:   25 EVTPPREKRPRDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRNRLRQAAQQLNGYLERGQLQCAQMVSRDLPGAML--DAVKEAHQQEVVYRPAFLKRQSNRGLGRKEALRKLAKHQSQLQKEAAA 150          
BLAST of mRNA_P-littoralis_Contig1257.1.1 vs. uniprot
Match: D7G5I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I2_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 3.650e-11
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 3
Query:   57 KVYRIKLTAGVDMAEGSTRQQVWYSKGIKYPKGGKSNRHWVAEADFAKSWRPSRERVGGD--SSVDDARASMDAHQDA--APSREKRPRVCQQNSQDPXXXXENRGGAREGSGRPKGSYGPERMR 419
            K YRI L A  D+ EG  ++  W S  IK PKG K+ R   AE  F + WRPS    GG+    + D+R  ++A  +A  A +R KRPR C  ++ +     E RGG REG+GRP+GS+GP+++R
Sbjct:   36 KSYRIHLVA--DLREGVRKE--WRSTPIKRPKGRKTGRDRGAEHKFFEDWRPSE---GGNVVERLRDSRHRIEAEAEAEVAAARTKRPRDCHASAAE-HARPEKRGGKREGAGRPRGSFGPKKLR 152          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1257.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KAS5_9PHAE7.710e-2843.12Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU25_9PHAE1.260e-2743.12Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G0B2_ECTSI7.990e-1743.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVH8_9PHAE1.740e-1349.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUL0_9PHAE5.230e-1342.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5I2_ECTSI3.650e-1142.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1257contigP-littoralis_Contig1257:5607..6265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size660
Hectar predicted targeting categorymitochondrion
Exons1
Cds size657
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.882405-UTR-P-littoralis_Contig1257:5606..56081680789552.882405-UTR-P-littoralis_Contig1257:5606..5608Pylaiella littoralis U1_48UTRP-littoralis_Contig1257 5607..5608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.8931165-CDS-P-littoralis_Contig1257:5608..62651680789552.8931165-CDS-P-littoralis_Contig1257:5608..6265Pylaiella littoralis U1_48CDSP-littoralis_Contig1257 5609..6265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1257.1.1prot_P-littoralis_Contig1257.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1257 5609..6265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1257.1.1

>prot_P-littoralis_Contig1257.1.1 ID=prot_P-littoralis_Contig1257.1.1|Name=mRNA_P-littoralis_Contig1257.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=219bp
MLAQRAMRLVALNQVRDKKVYRIKLTAGVDMAEGSTRQQVWYSKGIKYPK
GGKSNRHWVAEADFAKSWRPSRERVGGDSSVDDARASMDAHQDAAPSREK
RPRVCQQNSQDPPPPPENRGGAREGSGRPKGSYGPERMRTLLHKCEAFLR
DGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRPYLKSQANKGVGRKS
AIRKLAKKRSQWENAATAA
back to top

mRNA from alignment at P-littoralis_Contig1257:5607..6265+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1257.1.1 ID=mRNA_P-littoralis_Contig1257.1.1|Name=mRNA_P-littoralis_Contig1257.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=659bp|location=Sequence derived from alignment at P-littoralis_Contig1257:5607..6265+ (Pylaiella littoralis U1_48)
CAATGTTAGCCCAACGAGCAATGCGTCTTGTCGCCCTGAACCAAGTCAGG GACAAAAAGGTGTATCGTATCAAGCTTACAGCAGGAGTCGATATGGCTGA AGGGTCAACCAGGCAGCAAGTATGGTACAGTAAGGGCATCAAGTACCCCA AGGGCGGCAAATCTAATCGCCACTGGGTGGCCGAGGCGGACTTCGCGAAA AGCTGGCGGCCAAGCCGCGAGCGTGTGGGTGGTGACAGCAGCGTGGATGA TGCTCGTGCCAGCATGGATGCACACCAAGATGCCGCTCCTTCCCGAGAAA AGCGGCCACGGGTCTGTCAACAAAATTCTCAGGATCCACCGCCACCTCCT GAGAACCGCGGTGGAGCACGCGAAGGCAGCGGTAGGCCGAAGGGGAGCTA CGGCCCTGAGAGGATGCGGACGCTCCTGCACAAGTGTGAAGCGTTCCTTC GAGACGGCATGGCTCAATCTGCGCACGAAGCGACGCGGGATATTTCTGCT GCCAAGATGCTTGCTGCGGCGGTTGCGGTGGAAAACAATTGGGCGGAGTT GACTAGACCGTACCTCAAAAGTCAAGCCAACAAGGGCGTGGGCAGGAAGA GCGCTATTAGGAAGCTGGCGAAGAAGAGGTCACAGTGGGAGAACGCGGCA ACAGCAGCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1257:5607..6265+

>mRNA_P-littoralis_Contig1257.1.1 ID=mRNA_P-littoralis_Contig1257.1.1|Name=mRNA_P-littoralis_Contig1257.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=657bp|location=Sequence derived from alignment at P-littoralis_Contig1257:5607..6265+ (Pylaiella littoralis U1_48)
ATGTTAGCCCAACGAGCAATGCGTCTTGTCGCCCTGAACCAAGTCAGGGA
CAAAAAGGTGTATCGTATCAAGCTTACAGCAGGAGTCGATATGGCTGAAG
GGTCAACCAGGCAGCAAGTATGGTACAGTAAGGGCATCAAGTACCCCAAG
GGCGGCAAATCTAATCGCCACTGGGTGGCCGAGGCGGACTTCGCGAAAAG
CTGGCGGCCAAGCCGCGAGCGTGTGGGTGGTGACAGCAGCGTGGATGATG
CTCGTGCCAGCATGGATGCACACCAAGATGCCGCTCCTTCCCGAGAAAAG
CGGCCACGGGTCTGTCAACAAAATTCTCAGGATCCACCGCCACCTCCTGA
GAACCGCGGTGGAGCACGCGAAGGCAGCGGTAGGCCGAAGGGGAGCTACG
GCCCTGAGAGGATGCGGACGCTCCTGCACAAGTGTGAAGCGTTCCTTCGA
GACGGCATGGCTCAATCTGCGCACGAAGCGACGCGGGATATTTCTGCTGC
CAAGATGCTTGCTGCGGCGGTTGCGGTGGAAAACAATTGGGCGGAGTTGA
CTAGACCGTACCTCAAAAGTCAAGCCAACAAGGGCGTGGGCAGGAAGAGC
GCTATTAGGAAGCTGGCGAAGAAGAGGTCACAGTGGGAGAACGCGGCAAC
AGCAGCC
back to top