mRNA_P-littoralis_Contig1256.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1256.11.1
Unique NamemRNA_P-littoralis_Contig1256.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1256.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1256contigP-littoralis_Contig1256:25105..25298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size184
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size105
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.7674387-UTR-P-littoralis_Contig1256:25104..251061680789552.7674387-UTR-P-littoralis_Contig1256:25104..25106Pylaiella littoralis U1_48UTRP-littoralis_Contig1256 25105..25106 +
1680789552.8021379-UTR-P-littoralis_Contig1256:25221..252981680789552.8021379-UTR-P-littoralis_Contig1256:25221..25298Pylaiella littoralis U1_48UTRP-littoralis_Contig1256 25222..25298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.7779796-CDS-P-littoralis_Contig1256:25106..252071680789552.7779796-CDS-P-littoralis_Contig1256:25106..25207Pylaiella littoralis U1_48CDSP-littoralis_Contig1256 25107..25207 +
1680789552.7912836-CDS-P-littoralis_Contig1256:25217..252211680789552.7912836-CDS-P-littoralis_Contig1256:25217..25221Pylaiella littoralis U1_48CDSP-littoralis_Contig1256 25218..25221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1256.11.1prot_P-littoralis_Contig1256.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1256 25107..25221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1256.11.1

>prot_P-littoralis_Contig1256.11.1 ID=prot_P-littoralis_Contig1256.11.1|Name=mRNA_P-littoralis_Contig1256.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=35bp
MSIWFCFNCASFQGWCHLVHKFGMMAFMGWATRT*
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mRNA from alignment at P-littoralis_Contig1256:25105..25298+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1256.11.1 ID=mRNA_P-littoralis_Contig1256.11.1|Name=mRNA_P-littoralis_Contig1256.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=194bp|location=Sequence derived from alignment at P-littoralis_Contig1256:25105..25298+ (Pylaiella littoralis U1_48)
AGATGAGTATTTGGTTTTGTTTCAATTGTGCCTCGTTCCAGGGGTGGTGC
CATCTAGTGCACAAGTTTGGCATGATGGCGTTCATGGGTTGGGCGACGCG
GACGCGGCCTCAGTTGAAATAGTATGAGACCACGCGGAGTATTGAGTCGT
TGGAACATGGTCTCAGTCGTGCGTCGTACGACATGCGGCACTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1256:25105..25298+

>mRNA_P-littoralis_Contig1256.11.1 ID=mRNA_P-littoralis_Contig1256.11.1|Name=mRNA_P-littoralis_Contig1256.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=105bp|location=Sequence derived from alignment at P-littoralis_Contig1256:25105..25298+ (Pylaiella littoralis U1_48)
ATGAGTATTTGGTTTTGTTTCAATTGTGCCTCGTTCCAGGGGTGGTGCCA
TCTAGTGCACAAGTTTGGCATGATGGCGTTCATGGGTTGGGCGACGCGGA
CTTGA
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