mRNA_P-littoralis_Contig1250.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1250.7.1
Unique NamemRNA_P-littoralis_Contig1250.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1250.7.1 vs. uniprot
Match: D7G8Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z9_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 9.360e-13
Identity = 91/238 (38.24%), Postives = 108/238 (45.38%), Query Frame = 3 
Query:   42 MAEDKPMTVKERMAALARASSGGDSASTP-PKAVSTSAGPSVAERLAKMRAGPGRGDSVLGGSPTSANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADKIAALSGSGNSKSSALPSSPSAGPXXXXXXXXXXXXXXXXXXXXXXXXXNVSDAKGGDSPRVSSGLAARMEAMKLSSSST------SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHMGKAIPIPMPGGE 734
            MAE+KPMTVKERMAALARAS    +A  P P+A   + GPSVAERLAKMRAGP   D+  G +P                                         AD+IA+LSGSG+ K S LP SPS  P                           + A+   + ++S GLAAR+ AM+ S+          XXXXXXXXXXX                    MGKA PIPMPGGE
Sbjct:    1 MAEEKPMTVKERMAALARASGQSSAAPAPVPRASGAATGPSVAERLAKMRAGPA--DAPTGDAPRLVRTLTPHPGAPTVVTSMPGGAGDSSKSGGSSSV------ADRIASLSGSGSGKPSILPPSPSGRPAGSSVSPAAGKTSQHGEGEVS------APAEAPAASKLSPGLAARLNAMRSSTDYVPEGEEGEXXXXXXXXXXXLATSGSSSSFSKVSPGLAARMGKAFPIPMPGGE 224
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1250.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Z9_ECTSI9.360e-1338.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1250contigP-littoralis_Contig1250:31986..34074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1039
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_002460.1
Cds size768
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789551.1613197-UTR-P-littoralis_Contig1250:31985..320261680789551.1613197-UTR-P-littoralis_Contig1250:31985..32026Pylaiella littoralis U1_48UTRP-littoralis_Contig1250 31986..32026 +
1680789551.2153752-UTR-P-littoralis_Contig1250:33844..340741680789551.2153752-UTR-P-littoralis_Contig1250:33844..34074Pylaiella littoralis U1_48UTRP-littoralis_Contig1250 33845..34074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789551.1762073-CDS-P-littoralis_Contig1250:32026..321021680789551.1762073-CDS-P-littoralis_Contig1250:32026..32102Pylaiella littoralis U1_48CDSP-littoralis_Contig1250 32027..32102 +
1680789551.1905925-CDS-P-littoralis_Contig1250:32635..328391680789551.1905925-CDS-P-littoralis_Contig1250:32635..32839Pylaiella littoralis U1_48CDSP-littoralis_Contig1250 32636..32839 +
1680789551.2028377-CDS-P-littoralis_Contig1250:33356..338441680789551.2028377-CDS-P-littoralis_Contig1250:33356..33844Pylaiella littoralis U1_48CDSP-littoralis_Contig1250 33357..33844 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1250.7.1prot_P-littoralis_Contig1250.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1250 32027..33844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1250.7.1

>prot_P-littoralis_Contig1250.7.1 ID=prot_P-littoralis_Contig1250.7.1|Name=mRNA_P-littoralis_Contig1250.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=256bp
MAEDKPMTVKERMAALARASSGGDSASTPPKAVSTSAGPSVAERLAKMRA
GPGRGDSVLGGSPTSANKPGLVRTFTPPTSAPTVVTRSPGGGRGPSKSGG
SSSIADKIAALSGSGNSKSSALPSSPSAGPPASSTPPAAGKVASAGGGSN
DSGGGNVSDAKGGDSPRVSSGLAARMEAMKLSSSSTSSNGGSSEKNGTAV
EYASSKSGSKISPGLAAHMGKAIPIPMPGGEPRGGKDGLVCCVFHSSLRV
LSRVL*
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mRNA from alignment at P-littoralis_Contig1250:31986..34074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1250.7.1 ID=mRNA_P-littoralis_Contig1250.7.1|Name=mRNA_P-littoralis_Contig1250.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2089bp|location=Sequence derived from alignment at P-littoralis_Contig1250:31986..34074+ (Pylaiella littoralis U1_48)
CTCTGCCGTCACTTCTGAACACCGCTGCCATATCATATACCATGGCGGAA
GATAAACCCATGACAGTAAAAGAGCGGATGGCAGCTCTAGCCCGCGCTTC
CTCTGGCGGGGATTCAGGTGTGAAAGTTGTCGAGTCATGTGCGAAAAGCA
GACCGATACAACAGCAGTACACGTATGATACAAGTACCGGTATGACGCGC
CATCGTCCAGAATCATCGTATTTTGTATCAAGACTTGCTGCCAGTGCAGG
TGATGCGTGTAGTTAAAGTTATTTTGGCATTACTTCGAGAGTTTGTGGCC
AAACGTGCTCCTTCGAAGCGCGTCCGCTGGGCTGACTTGCTGACTTAGGG
TTTCCAAGTTTGGTCGTGCACGAGAGTGATAGAATAGATAGCTCATGTAA
AAGCTGCTGTTCTTCAGGCGAATGGACAAATGTTGCGGCAATCACGCCTT
GTGTTCCACTAGCTGGCTCTCAGAGAAGCGTGTGAAGGCTACAGCAGAGC
GGACTTGACAGCCCCAAAATATCATCAAGCATTGATTTCTCTTATCCTCA
CAACCACTTGAAATTGCCATTGCTGGCCACACCGTTGCACGGCTCCTCTC
TAGACCCTAACCCCTACCATCCTCGAACACCCCATGGCTGGAACCAACAG
CTTCCACGCCACCGAAGGCGGTTAGCACTTCCGCCGGGCCTTCAGTCGCA
GAAAGGCTTGCAAAGATGCGGGCAGGGCCGGGAAGGGGCGACTCTGTGCT
GGGTGGTAGTCCCACCAGTGCAAACAAGCCGGGGCTGGTACGAACTTTCA
CCCCGCCGACTAGCGCCCCGACGGTGGTCACGCGAAGCCCAGGCGGAGGT
CGAGGTGGGTTACGCGAGTGTGGAGATTTTATACCACTTATTTACGGGGG
CGATTTAGAGTTCCTAGGTACTGGTTGATGATCGCCGTATGATATACAGG
TTGGGTGCGTTTTTTTGTGCGGCCCGGAAAAGTTAAAACTGAACGTACGA
TTTCCACGTTGAGTTGCGGCACCGCTGGTGACATCTGGTATGTGTAGGGC
TATTTGAACGTCTGTGAGTCGGAACGAGGGCCCCCAGTAGCACCCGTTTT
CAACACGAGTCTGCCGGTCTGCCGATTTTTTTTAGTCGTGCGCGATGTAA
ACGCTGTTTTCATCCCCCGTATCCTTCTCGTGGCCTGACCTCTAGCGCCC
CGTTCCCGATGAGTCTCTTAGTCATCGTCCTTCGTGTTGTTCAACCTCTC
GACAGCACTTGCCTCGCTATCTTTCTACTCTTGTGTCGGCCTTCAATGTT
GCTCATCTTCATTGACCCAACCTCACTCGTTTCTATCTTGACCTTTGGTC
TCGTTACGGTGCGGTTGAAAGGTCCTTCCAAAAGTGGCGGCAGCTCCAGC
ATCGCCGACAAAATCGCCGCCCTGAGCGGCAGCGGCAACAGCAAGTCTTC
CGCCTTACCATCGAGCCCTTCAGCGGGACCGCCCGCATCATCGACCCCCC
CGGCAGCGGGAAAGGTGGCCTCTGCCGGCGGCGGCAGCAACGACAGTGGT
GGCGGTAACGTGTCCGATGCGAAGGGTGGAGACTCGCCGCGGGTGTCATC
CGGGCTGGCTGCCCGGATGGAGGCCATGAAACTGAGCTCCTCTTCTACTT
CCTCCAACGGGGGCAGCAGCGAGAAGAATGGCACGGCCGTGGAGTATGCC
AGCTCTAAATCCGGGTCGAAGATTTCTCCGGGGCTTGCGGCCCATATGGG
GAAAGCCATCCCCATTCCCATGCCTGGGGGTGAGCCGCGAGGGGGCAAAG
ACGGCCTCGTTTGCTGTGTTTTTCATTCTTCACTACGAGTATTGTCTCGG
GTCTTGTGATGTCGCGGTGTGGGCAAGCTTATCGGATTATTTTCGCGGTC
GGTTTGGTCGCCTGCGATCATACTTCCGAACACCTAAGTCGCCAGAGGAT
GCTGTGTTGGTGCGGGCTACAGGTTTGTCGCTGGGTGCACTCCTACCCTG
GCGCTTGGTGCACTCCTACCCTGGCGCTTGGTGCTTGAACAAACGCAAAG
ATACAGCAGGTCGTGTAACAAAAGATGTGCTGTTCGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1250:31986..34074+

>mRNA_P-littoralis_Contig1250.7.1 ID=mRNA_P-littoralis_Contig1250.7.1|Name=mRNA_P-littoralis_Contig1250.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=768bp|location=Sequence derived from alignment at P-littoralis_Contig1250:31986..34074+ (Pylaiella littoralis U1_48)
ATGGCGGAAGATAAACCCATGACAGTAAAAGAGCGGATGGCAGCTCTAGC
CCGCGCTTCCTCTGGCGGGGATTCAGCTTCCACGCCACCGAAGGCGGTTA
GCACTTCCGCCGGGCCTTCAGTCGCAGAAAGGCTTGCAAAGATGCGGGCA
GGGCCGGGAAGGGGCGACTCTGTGCTGGGTGGTAGTCCCACCAGTGCAAA
CAAGCCGGGGCTGGTACGAACTTTCACCCCGCCGACTAGCGCCCCGACGG
TGGTCACGCGAAGCCCAGGCGGAGGTCGAGGTCCTTCCAAAAGTGGCGGC
AGCTCCAGCATCGCCGACAAAATCGCCGCCCTGAGCGGCAGCGGCAACAG
CAAGTCTTCCGCCTTACCATCGAGCCCTTCAGCGGGACCGCCCGCATCAT
CGACCCCCCCGGCAGCGGGAAAGGTGGCCTCTGCCGGCGGCGGCAGCAAC
GACAGTGGTGGCGGTAACGTGTCCGATGCGAAGGGTGGAGACTCGCCGCG
GGTGTCATCCGGGCTGGCTGCCCGGATGGAGGCCATGAAACTGAGCTCCT
CTTCTACTTCCTCCAACGGGGGCAGCAGCGAGAAGAATGGCACGGCCGTG
GAGTATGCCAGCTCTAAATCCGGGTCGAAGATTTCTCCGGGGCTTGCGGC
CCATATGGGGAAAGCCATCCCCATTCCCATGCCTGGGGGTGAGCCGCGAG
GGGGCAAAGACGGCCTCGTTTGCTGTGTTTTTCATTCTTCACTACGAGTA
TTGTCTCGGGTCTTGTGA
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