mRNA_P-littoralis_Contig125.96.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig125.96.1
Unique NamemRNA_P-littoralis_Contig125.96.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig125.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig125contigP-littoralis_Contig125:361383..361866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size484
Hectar predicted targeting categorymitochondrion
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789545.6465302-UTR-P-littoralis_Contig125:361382..3614971680789545.6465302-UTR-P-littoralis_Contig125:361382..361497Pylaiella littoralis U1_48UTRP-littoralis_Contig125 361383..361497 +
1680789545.666689-UTR-P-littoralis_Contig125:361800..3618661680789545.666689-UTR-P-littoralis_Contig125:361800..361866Pylaiella littoralis U1_48UTRP-littoralis_Contig125 361801..361866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789545.6561937-CDS-P-littoralis_Contig125:361497..3618001680789545.6561937-CDS-P-littoralis_Contig125:361497..361800Pylaiella littoralis U1_48CDSP-littoralis_Contig125 361498..361800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig125.96.1prot_P-littoralis_Contig125.96.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig125 361498..361800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig125.96.1

>prot_P-littoralis_Contig125.96.1 ID=prot_P-littoralis_Contig125.96.1|Name=mRNA_P-littoralis_Contig125.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MRVLQRWRNLTCFPVRAGSQMPLVSWCVRRHRREFVCVACVRPAKSRGVK
KHRFKICKNMMYETVSFSGIRETSPLQRLEQRDNPVLSFEWFTQILDLGN
*
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mRNA from alignment at P-littoralis_Contig125:361383..361866+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig125.96.1 ID=mRNA_P-littoralis_Contig125.96.1|Name=mRNA_P-littoralis_Contig125.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=484bp|location=Sequence derived from alignment at P-littoralis_Contig125:361383..361866+ (Pylaiella littoralis U1_48)
GCCACACGAATTGGAATTTTTTCTCACACAAATATTAAATATTAACACGT
GAAAAGGTTTGAATCTGCTAAGGTTGAAAAAAAACACGAATTAAAATTGG
AGCCAATGTTTCTTTATGCGGGTTCTCCAGAGGTGGAGAAATTTGACATG
CTTTCCTGTCCGGGCAGGTAGCCAGATGCCCCTCGTCTCTTGGTGTGTGC
GGAGGCACCGCCGCGAGTTCGTGTGCGTAGCTTGCGTGAGGCCAGCGAAA
TCTCGGGGGGTAAAAAAACACCGCTTCAAAATCTGCAAAAACATGATGTA
CGAAACAGTCTCCTTTAGTGGTATTAGAGAAACCAGCCCTTTGCAACGAT
TGGAACAACGGGACAACCCTGTTTTAAGTTTTGAGTGGTTCACACAGATA
CTTGATCTAGGGAACTAGAGGCTCTCTTCGAGAATTATAGTGCTTCTTCG
TGCGAGAGTGAACCTCTTGTTGAGGACGACGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig125:361383..361866+

>mRNA_P-littoralis_Contig125.96.1 ID=mRNA_P-littoralis_Contig125.96.1|Name=mRNA_P-littoralis_Contig125.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig125:361383..361866+ (Pylaiella littoralis U1_48)
ATGCGGGTTCTCCAGAGGTGGAGAAATTTGACATGCTTTCCTGTCCGGGC
AGGTAGCCAGATGCCCCTCGTCTCTTGGTGTGTGCGGAGGCACCGCCGCG
AGTTCGTGTGCGTAGCTTGCGTGAGGCCAGCGAAATCTCGGGGGGTAAAA
AAACACCGCTTCAAAATCTGCAAAAACATGATGTACGAAACAGTCTCCTT
TAGTGGTATTAGAGAAACCAGCCCTTTGCAACGATTGGAACAACGGGACA
ACCCTGTTTTAAGTTTTGAGTGGTTCACACAGATACTTGATCTAGGGAAC
TAG
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