mRNA_P-littoralis_Contig1245.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1245.6.1
Unique NamemRNA_P-littoralis_Contig1245.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1245.6.1 vs. uniprot
Match: A0A6H5L7W4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.030e-15
Identity = 43/86 (50.00%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:    4 LWPATREVAG-----EKEQCMHVELAGECDWEKFHNQTTSGVSGGMSDAEQVRLGATPPMRTPAIPLPPGWELRAPKDVMEVIYHD 246
            LWPA  E AG     E    MHV+L GEC WEK HN  TSG    +   E++ L  T   R PA PLPPG+ L  P++VMEV+YHD
Sbjct:  546 LWPAVSESAGGDPLGEGSTWMHVQLEGECGWEKQHNLRTSGKLEELPVDERLELWCTERQRVPAQPLPPGFRLLEPREVMEVVYHD 631
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BLAST of mRNA_P-littoralis_Contig1245.6.1 vs. uniprot
Match: A0A6H5JDB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.900e-15
Identity = 43/86 (50.00%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:    4 LWPATREVAG-----EKEQCMHVELAGECDWEKFHNQTTSGVSGGMSDAEQVRLGATPPMRTPAIPLPPGWELRAPKDVMEVIYHD 246
            LWPA  E AG     E    MHV+L GEC WEK HN  TSG    +   E++ L  T   R PA PLPPG+ L  P++VMEV+YHD
Sbjct:  188 LWPAVFESAGGDPLGEGSTWMHVQLEGECGWEKQHNLRTSGKLEELPVDERLELWCTERQRVPAQPLPPGFRLLEPREVMEVVYHD 273
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BLAST of mRNA_P-littoralis_Contig1245.6.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.730e-13
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:   49 MHVELAGECDWEKFHNQTTSGVSGGMSDAEQVRLGATPPMRTPAIPLPPGWELRAPKDVMEVIYHD 246
            MHV+L GEC WEK HN  TSG    +   E++ L  T   R PA PLPPG+ L  P++VMEV+YHD
Sbjct:    1 MHVQLEGECGWEKQHNLRTSGKLEELPVDERLELWCTERQRVPAQPLPPGFRLLEPREVMEVVYHD 66
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BLAST of mRNA_P-littoralis_Contig1245.6.1 vs. uniprot
Match: A0A6H5K2M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M3_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.320e-12
Identity = 40/83 (48.19%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:    4 LWPATREVAG-----EKEQCMHVELAGECDWEKFHNQTTSGVSGGMSDAEQVRLGATPPMRTPAIPLPPGWELRAPKDVMEVI 237
            LWPA  E AG     E    MHV+L GEC WEK HN  TSG    +   E++ L  T   R PA PLPPG+ L  P++VMEV+
Sbjct:   67 LWPAVFESAGGDPLGEGSTWMHVQLEGECGWEKQHNLRTSGKLEELPVDERLELWCTERQRVPAQPLPPGFRLLEPREVMEVV 149
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1245.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L7W4_9PHAE1.030e-1550.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDB4_9PHAE1.900e-1550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K344_9PHAE3.730e-1353.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M3_9PHAE1.320e-1248.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1245contigP-littoralis_Contig1245:18812..19057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size248
Hectar predicted targeting categoryother localisation
Exons1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789544.3489993-CDS-P-littoralis_Contig1245:18811..190571680789544.3489993-CDS-P-littoralis_Contig1245:18811..19057Pylaiella littoralis U1_48CDSP-littoralis_Contig1245 18812..19057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1245.6.1prot_P-littoralis_Contig1245.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1245 18812..19057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1245.6.1

>prot_P-littoralis_Contig1245.6.1 ID=prot_P-littoralis_Contig1245.6.1|Name=mRNA_P-littoralis_Contig1245.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
MLWPATREVAGEKEQCMHVELAGECDWEKFHNQTTSGVSGGMSDAEQVRL
GATPPMRTPAIPLPPGWELRAPKDVMEVIYHD
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mRNA from alignment at P-littoralis_Contig1245:18812..19057-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1245.6.1 ID=mRNA_P-littoralis_Contig1245.6.1|Name=mRNA_P-littoralis_Contig1245.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig1245:18812..19057- (Pylaiella littoralis U1_48)
ATGCTTTGGCCAGCGACACGCGAAGTCGCGGGCGAGAAGGAGCAGTGTAT
GCATGTCGAGCTTGCGGGGGAGTGCGACTGGGAGAAATTCCACAATCAAA
CAACTAGCGGAGTCTCTGGTGGCATGTCGGATGCCGAGCAAGTAAGGCTT
GGGGCGACACCGCCGATGCGAACCCCTGCCATTCCTCTTCCTCCTGGCTG
GGAACTGCGTGCGCCGAAAGACGTGATGGAGGTAATATACCACGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1245:18812..19057-

>mRNA_P-littoralis_Contig1245.6.1 ID=mRNA_P-littoralis_Contig1245.6.1|Name=mRNA_P-littoralis_Contig1245.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig1245:18812..19057- (Pylaiella littoralis U1_48)
ATGCTTTGGCCAGCGACACGCGAAGTCGCGGGCGAGAAGGAGCAGTGTAT
GCATGTCGAGCTTGCGGGGGAGTGCGACTGGGAGAAATTCCACAATCAAA
CAACTAGCGGAGTCTCTGGTGGCATGTCGGATGCCGAGCAAGTAAGGCTT
GGGGCGACACCGCCGATGCGAACCCCTGCCATTCCTCTTCCTCCTGGCTG
GGAACTGCGTGCGCCGAAAGACGTGATGGAGGTAATATACCACGAC
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