mRNA_P-littoralis_Contig1244.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1244.38.1
Unique NamemRNA_P-littoralis_Contig1244.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1244.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1244contigP-littoralis_Contig1244:45129..50939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size316
Hectar predicted targeting categoryother localisation
Exons3
Cds size204
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789544.0160038-UTR-P-littoralis_Contig1244:45128..452401680789544.0160038-UTR-P-littoralis_Contig1244:45128..45240Pylaiella littoralis U1_48UTRP-littoralis_Contig1244 45129..45240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789544.0263517-CDS-P-littoralis_Contig1244:45240..452961680789544.0263517-CDS-P-littoralis_Contig1244:45240..45296Pylaiella littoralis U1_48CDSP-littoralis_Contig1244 45241..45296 -
1680789544.0343127-CDS-P-littoralis_Contig1244:45670..457831680789544.0343127-CDS-P-littoralis_Contig1244:45670..45783Pylaiella littoralis U1_48CDSP-littoralis_Contig1244 45671..45783 -
1680789544.042853-CDS-P-littoralis_Contig1244:50904..509391680789544.042853-CDS-P-littoralis_Contig1244:50904..50939Pylaiella littoralis U1_48CDSP-littoralis_Contig1244 50905..50939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1244.38.1prot_P-littoralis_Contig1244.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1244 45241..50939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1244.38.1

>prot_P-littoralis_Contig1244.38.1 ID=prot_P-littoralis_Contig1244.38.1|Name=mRNA_P-littoralis_Contig1244.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
TTLLITILLHHCRCNEDSRTNRRNRGSASACAGVAALRPHSRTSRPCKIG
KGHPWRSTLCLKSMKGV*
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mRNA from alignment at P-littoralis_Contig1244:45129..50939-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1244.38.1 ID=mRNA_P-littoralis_Contig1244.38.1|Name=mRNA_P-littoralis_Contig1244.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5811bp|location=Sequence derived from alignment at P-littoralis_Contig1244:45129..50939- (Pylaiella littoralis U1_48)
ACTACGCTTCTGATCACAATACTGCTGCATCATTGGTGAGATGAGAGCGG
GTGGGGAGACAGGATGCTCACGAAAGCTCTGCTTGGATATATGGTTGCCT
TCTGTGTGCGTCGTTCAATGCAACAAGTACGTATCGTATCGTACAATACT
TGTAACTTGATTTACTTCTACTGTACTCTACGTGTACTTTACTCTGAGGC
TCGTTTTAAACATATTCCATAAATATGGAAATTTTCCATAAATATGGATC
CATATTTATGGAATCGAGAGAGCTCTTTTTAAACGTGTAAAAACCGATTC
CATATTTATGGAAATATGGTCTCCAAAAAGTTCTTTAGAAGGCATGAAAG
GTGACGTACGTTCGATCAACAAGAAGACACTCCAAGTGTTGTGAAGGACA
GACACAGCAATTTCCACCACCGTCATCTTCTCGTTCCCTACAATACCTAT
CAACGTGAAACCTTCTTGGCGGTCACTTCCGTTCACTGTTCTCTGTCGAT
GGGGCGTTGGTTTGGAGGCAGGGTCATTCAATCGACAGAGAGAAGCGTCG
CTCGTTGTTGAGAATGTCTGCAAATATCAATCGACAGACCAATCTGACCA
CTTTTTTAGCATACTCGAAAATAGACCACTTACTTGTTCTGCCGCCATAA
AAAAGTGAAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGAACACATCCG
ACAGCAACACCACCGTCATCTTCTCGTTCCCTATACCATCTCTCAACGTG
AAACCTTCTTGGCGGTCGTCTCCATTCACTGTTCTCTGTCGGTGGGGCGT
TGGGTTGGATACAGGGTCATTCAGTCGAGAGAGAGAAGGGTCGCTCGTTG
TTGAAAATAGCTGATAATGTCAATCGAGAGATCAATCTGACCACTTTTTT
AGTACTTGAAAATAGACCACCTGTTCTACTTATTTAGTACTTGAAAATAG
ACCACTTGTTCTACCGACTGAAAAAGTGAAAACAGCAGCAGCAGCATCAG
CAGACAACATCTCATGCGCCGCGATGCTGATGATGCAGCCGATTGAATGA
CACCACCTCTAACGCAACGCCCTGCTTGTAGAGAGCAGTAAAATGAGGTA
AAAGCCACGAAGCATTCGCGTTGAGAGGTGGTGTATAGGTAACAACAAGA
GCTGACTGCTGCTGTGGTAAATTATTCTCCCGCAGCTCATCATCATTTCA
ACAAAGGAAGGGGGCCTCTCTCAATCAAATGGCCAACTCCGGCCACTTTA
ACAGCGACCGAACTGGTGACGCGGTGGCTCTCCGGTTGCTTCGATGCCCC
TATGAGCTCGCAATTACGTGTAGGCCTCGGGCGTGTTGCTACTGCTGTGT
GTTCACACTGATTTGAACACTGATTTGAAAATATGGAAAATATGGAAACT
TTCCATAAATCTGGAATGGACTTGGGCCACTTTTTTGGGCCCAAGTCGGT
TCCACATTTATGGAAAAAATATGAACAAACGCCTCCTCGGAATGTTCATA
AATATGGAAATTTCCATAAATATGGACAAATCACGTGATGTTTAAAATGG
CCCTGAATGTCTTGAAATGCTCCGTCTATGAAACAACCTCAACAGCAGGA
GCAACAGCAGCAACAGCAGCAGTGTCAACTGCTGCAGTGTCCCCACCACA
TCTGCACATATCGCAACAACGGCAGCACTGTATCCATCACATGAGTACAT
GCAGGTAGTGTGTGTATCAGTGTGTTCACATGACACTCCATCCCTTCCGG
ACGCCGGTCTGCACCTTTCGGCACGGAGTATGTGTGTGGGCTCATCATCA
GCCGTGGGCACTCAGATCGTCATCCCAGATGTTTCTCGCTCCCCCTTCCT
CGCCCGGGACTTGCCTTTATTTTTACCTCGAGAAGGGTTCGGCCGTCCCC
TCGTCTCGTCAACTTTCGAACCGAATTGTGCAGTCGTTCGTATGCATGAT
GTGCGAAAAAAAACCAGCACTTGGACACTTGTGCAATGCTGCTGTACTGC
TTGTACAGACTTTGAAGTAGCATCGAACGGTGCTCTCGGTGAGGTCAAAC
TAACTCGGTGTAAACTATCGCTGTATTTTTTGTGTTGGTATTTGACCGCA
CTTGTTTTGGGTTGCTCAATCAACACCACACCAGCAGATGCAACGAGGAC
AGCAGAACGAACAGGAGGAACAGGGGCTCAGCCAGCGCTTGTGCAGGCGT
GGCAGCCTTGAGGCCTCACTCCCGCACGAGTCGTCCCTGTAAAATCGGTG
GGTACATCACAAGCGCACTCACGCACACATTCCACGCACACTGACTGAAC
GCACACGCGGGTGAGTGTGAGGGGTGAGGAGCTCATTCGTTGATATCCAC
CTCGCCTCGAAACCAACCTCGTGTCGAATGTATTGCCTGGTTTGTTTTCC
GAAGTTGACGACCTAAGCACAACCTGGAGCTGAAACGCTGCTGGGCGTTC
ATTTACCGTGTAGACTACTGTAATGTGGAGACAGAAATAGAAAATAAGTT
TAACAAGCTCCAGCTGCAGCCCCATGATGTGTCATACCTGCAAAAACGAA
AAAAAAAAAGCTGAGACTGACGATAACCTGAGACGCTCCTGTTGGCCCCG
CTCACTTCGCGTCAAACCCAGGAAAAGGGCACCCACCCCTGGAGATCGAC
CTTGTGCCTGAAGTCTATGAAGGGGGTCTGAACGTTCGGGAGGCTAGGTC
TTGGTTTGGTGTAACACCTGGTATCCTCCGACGGGGATGGCGGCGGCGAT
GGCGGGTGGTTCATGAAGGGAAGACGGAGCAACGGCGATGACGGTATGAC
CTGTTTACATGGACGTTTTTTTAATTGTGTTGAACTTTGATGTGATTCGT
TTGTGCGGGGATTGTCCTCCTGAAGGCGCTGCTGTCGCTGCCTTTGTGTA
CGGGTTGGATGGTAGCTGTGGGTAAGTCGGAATTGAGGGAAGGTATCGAG
CGCGTTGCCCGTCCTGCTCTTACGAGCGAGGTCGTTTTTAATCATGAAAT
GAAGCTGAGGTGATAAGTAGTGGGATGTATCATGAAGTATGAGAGGGATC
AGGGATGGCCGGGATACCGTAGGCGAGGCGTCGTTTGCTCCACAGTATTC
TGCGACAACCACGGACATGCGGTGTGTTGTGTGTGCATGCGCTGCGCTGC
TGGTTCTTCTTCCTCTGGTTGTACTCCTCTCGTTGTATTATTATTAAAAC
CTGACCCCAAAGCGCAGCCTCCGAATAAGGCAAATATGCACAAGACCTGT
ACGCGCGGCATGTGCTTGGTTCTTTACGGTCGGCTTGCCAGCCTCGGGAT
ATCTTGAAGTTTGCGGAATGGTCACGAAAAATATGCTCCTGTCAAACGTG
ACTTTGTTTTCCTACGGGTGTCGAAATGTCAAATATTAATTTACTGCCTT
GTGCGCCATTGTTACGCCCCCTGCGTTTGCCCCCCTCAACTTGCGCCTGA
CACCACGCTGTCTTGCACGACTGTCTCGCATACGTGCCGTTCCTGCGCGT
CTTTGTTGTGCACTTGCATACATGGCTGCGTAATTGGTTGCAGTAGTTGG
TTGCAGGTGCAGAAAGCGGACATGGACGCTGAGCCGACGGGGTCGGAGTG
TGCCAAATGCCTGAGCAACGACTGCTTGTCGGCACGCCGCCATGGGCTTC
GTCGGGAGTCGGCGGTTGCGAAGTCGGTAGCGGTCCAAGTAGTGCTGCCC
GCTGCCGTGGTCGATGGAATAGGGCCGCAAAAAATACAGAATGCGTATTT
GATACAAGTAGCAGGCATTTTTTACATGTGTGCAGCATTTTTGTGGAACC
GGTGCCTTACTCTGGATAGCCGGGGGGAGACATGGTTGATGCGACACGGG
CACGTTGCGCAGTATTGGTTCTGTTTTTTGCCATCGGTTCGTTTTGGTTT
GACACGTCGACAATTCAAATGTGTGCCCTGACTTTATTTAGCCTCTCTGC
TTTTCACCTCAAAACAAATGCGGTGAAGTATCTCCTGGTGTTCGCCCGGC
CGTGAGATTTTCCGCTTCATTTATTTTCATTGATGGTTGTGTGATGCTTT
CGTGCCTCGGTAACACGACACAAAAAGCGATACGAAGGAAGTACTTTTGA
GCTCGTCTCCATGTAGCACAACAACTGCATCACAGCGAGTACCCTGTGTC
CGCTCAGGAGGACATTTACAAGTGCGCTGCTTCTGCTGCTGCTGCTGCTG
CTACTTGACACGCAGTGTGGACCAATGATGGTTGCAACGCTGCACAATTT
GCTCTGCTTTGCGTTTGCTCGCACTTCGTATCATAGTCTATACTGTAGCG
GTACCAGGTATATGTTGCCGTCCTACTGCTGTGCGGCAAACACAGCGTAC
AGCAGCACAAAAAATCCAAGACACATATTGTGTGCCACACGAATCTCGGA
GAATGTCACCCCCGACAAAGTCTGTAGGTCAGCTGCCTCCGGGACTGTCA
GTTTTCACACACCGTTGCGCATACAGCCGTACATCATGTATCATACAACC
ACCCGCAACGTATCGTATCGTACAATACTTGTAACTTGATTTACTTCTAC
TGTACTCTACGTGTACTTTACTCTGAATGTCTTGAAATGCTCCGTCTATG
AAACAACCTCAACAGCAGGAGCAACAGCAGCAACAGCAGCAGTGTCAACT
GCTGCAGTGTCCCCACCACATCTGCACATATCGCAACAACGGCAGCACTG
TATCCATCACATGAGTACATGCAGGTAGTGTGTGTATCAGTGTGTTCACA
TGACACTCCATCCCTTCCGGACGCCGGTCTGCACCTTTCGGCACGGAGTA
TGTGTGTGGGCTCATCATCAGCCGTGGGCACTCAGATCGTCATCCCAGAT
GTTTCTCGCTCCCCCTTCCTCGCCCGGGACTTGCCTTTATTTTTACCTCG
AGAAGGGTTCGGCCGTCCCCTCGTCTCGTCAACTTTCGAACCGAATTGTG
CAGTCGTTCGTATGCATGATGTGCGAAAAAAAAACAGCACTTGGACACTT
GTGCAATGCTGCTGTACTGCTTGTACAGACTTTGAAGTAGCATCGAACGG
TGCTCTCGGTGAGGTCAAACTAACTCGGTCCGTAAACTATCGCTGTATTT
TTTGTGTTGTTATTTGACCGCACTTGTTTTGGGTTGCTCAATCAACACCA
CACCAGCAGATGCAACGAGGACAGCAGAACGAACAGGAGGAACAGGGGCT
CAGCCAGCGCTTGTGCAGGCGTGGCAGCCTTGAGGCCTCACTCCCGCACG
AGTCGTCCCTGTAAAATCGGTGGGTACATCACAAGCGCACTCACGCACAC
ATTCCACGCACACTGACTGAACGCACACGCGGGTGAGTGTGAGGGGTGAG
GAGCTCATTCGTTGATATCCACCTCGCCTCGAAACCAACCTCGTGTCGAA
TGTATTGCCTGGTTTGTTTTCCGAAGTTGACGACCTAAGCACAACCTGGA
GCTGAAACGCTGCTGGGCGTTCATTTACCGTGTAGACTACTGTAATGTGG
AGACAGAAATAGAAAACAAGTTTGAACAAGCTCCAGCTGCAGCCCCATGA
TGTGTCATACCTGCAAAAACGAAAAAAAAAAGCTGAGACTGACGATAACC
TGAGACGCTCCTGTTGGCCCCGCTCACTTCGCGTCAAACCCAGGAAAAGG
GCACCCCTGGAGATCGACCTTGTGCCTGAAGTCTATGAAGGGGGTCTGAA
CGTTCGGGAGGCTAGGTCTTGGTTTGGTGTAACACCTGGTATCCTCCGAC
GGGGATGGCGGCGGCGATGGCGGGTGGTTCATGAAGGGAAGACGGAGCAA
CGGCGATGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1244:45129..50939-

>mRNA_P-littoralis_Contig1244.38.1 ID=mRNA_P-littoralis_Contig1244.38.1|Name=mRNA_P-littoralis_Contig1244.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig1244:45129..50939- (Pylaiella littoralis U1_48)
ACTACGCTTCTGATCACAATACTGCTGCATCATTGCAGATGCAACGAGGA
CAGCAGAACGAACAGGAGGAACAGGGGCTCAGCCAGCGCTTGTGCAGGCG
TGGCAGCCTTGAGGCCTCACTCCCGCACGAGTCGTCCCTGTAAAATCGGA
AAAGGGCACCCCTGGAGATCGACCTTGTGCCTGAAGTCTATGAAGGGGGT
CTGA
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