mRNA_P-littoralis_Contig1233.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1233.9.1
Unique NamemRNA_P-littoralis_Contig1233.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1233.9.1 vs. uniprot
Match: D7FLR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR6_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.980e-8
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = -2 
Query:  252 HTAEEQAAAQGHLVVAIKRRKLVVKARQDQATGGKLKGKSYERV 383
            +TAEEQAAAQGHLVVAIKRRKLVVKARQDQ+TGG   G    +V
Sbjct:  455 YTAEEQAAAQGHLVVAIKRRKLVVKARQDQSTGGATLGTGANQV 498
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1233.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLR6_ECTSI2.980e-877.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1233contigP-littoralis_Contig1233:32293..32676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size385
Hectar predicted targeting categoryother localisation
Exons1
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789538.543894-CDS-P-littoralis_Contig1233:32292..326761680789538.543894-CDS-P-littoralis_Contig1233:32292..32676Pylaiella littoralis U1_48CDSP-littoralis_Contig1233 32293..32676 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1233.9.1prot_P-littoralis_Contig1233.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1233 32293..32676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1233.9.1

>prot_P-littoralis_Contig1233.9.1 ID=prot_P-littoralis_Contig1233.9.1|Name=mRNA_P-littoralis_Contig1233.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
DEQRWETASHSVVVSLRVLRNCEFTPRETSFNGSDARNLINTSNAQESGD
ALVASGENNTVKERVENDSSIARQQQTTTATTTITRSYDFPLSLPPVAWS
CLAFTTSLRLLIATTRCPCAAACSSAV*
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mRNA from alignment at P-littoralis_Contig1233:32293..32676-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1233.9.1 ID=mRNA_P-littoralis_Contig1233.9.1|Name=mRNA_P-littoralis_Contig1233.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig1233:32293..32676- (Pylaiella littoralis U1_48)
GATGAGCAAAGATGGGAAACTGCGAGCCATTCAGTCGTTGTGAGCTTGAG
GGTTTTAAGAAATTGTGAATTTACTCCGCGAGAAACTTCATTCAACGGGT
CAGACGCACGCAACCTTATCAACACATCAAATGCACAAGAGAGCGGGGAT
GCCTTGGTTGCGTCGGGTGAAAATAACACAGTGAAAGAGAGGGTGGAAAA
TGACTCGTCAATTGCCAGGCAACAACAAACAACAACAGCAACAACAACAA
TAACGCGCTCGTACGACTTTCCCTTGAGCTTACCGCCGGTGGCTTGGTCC
TGCCTCGCCTTCACGACGAGCTTGCGCCTCTTGATCGCAACGACGAGGTG
TCCCTGCGCTGCTGCTTGTTCTTCCGCTGTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1233:32293..32676-

>mRNA_P-littoralis_Contig1233.9.1 ID=mRNA_P-littoralis_Contig1233.9.1|Name=mRNA_P-littoralis_Contig1233.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig1233:32293..32676- (Pylaiella littoralis U1_48)
GATGAGCAAAGATGGGAAACTGCGAGCCATTCAGTCGTTGTGAGCTTGAG
GGTTTTAAGAAATTGTGAATTTACTCCGCGAGAAACTTCATTCAACGGGT
CAGACGCACGCAACCTTATCAACACATCAAATGCACAAGAGAGCGGGGAT
GCCTTGGTTGCGTCGGGTGAAAATAACACAGTGAAAGAGAGGGTGGAAAA
TGACTCGTCAATTGCCAGGCAACAACAAACAACAACAGCAACAACAACAA
TAACGCGCTCGTACGACTTTCCCTTGAGCTTACCGCCGGTGGCTTGGTCC
TGCCTCGCCTTCACGACGAGCTTGCGCCTCTTGATCGCAACGACGAGGTG
TCCCTGCGCTGCTGCTTGTTCTTCCGCTGTGTGA
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