mRNA_P-littoralis_Contig1233.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1233.3.1
Unique NamemRNA_P-littoralis_Contig1233.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1233.3.1 vs. uniprot
Match: A0A6H5KU06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU06_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.110e-35
Identity = 65/92 (70.65%), Postives = 76/92 (82.61%), Query Frame = 2 
Query:  302 PPASKAKRKKLRSDYRPVLPEHKEMTTQRLFTEGHVATGSFFLNHRNFAEDALRFNDVKIAGKEVWQQQPSGPSTLHNNIVIAEHLPSLAPL 577
            P ASK KRKK+R DYR VLPE++EMTT+RLF E HVATGSFF++H  FA++  RFNDV I GK VWQ++PSG STLHN+I IAEH PSLAPL
Sbjct:   20 PCASKEKRKKIRHDYRSVLPEYEEMTTERLFAECHVATGSFFIDHNRFAQEGERFNDVTIGGKPVWQKKPSGHSTLHNSIAIAEHFPSLAPL 111
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BLAST of mRNA_P-littoralis_Contig1233.3.1 vs. uniprot
Match: D8LFC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC5_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 3.220e-29
Identity = 59/98 (60.20%), Postives = 71/98 (72.45%), Query Frame = 2 
Query:  281 SEEEKVIPPASKAKRKKLRSDYRPVLPEHKEMTTQRLFTEGHVATGSFFLNHRNFAEDALRFNDVKIAGKEVWQQQPSGPSTLHNNIVIAEHLPSLAP 574
            SE +K   P     +KK+R DYRPV P+++ MTT+RLF+EGH+A GSF  NH  FAE+A  FN VKI GK VWQQQP GPSTLHNN+ I +  PSLAP
Sbjct:   69 SEGKKRKKPTVSTGKKKIRHDYRPVDPQYERMTTERLFSEGHIAMGSFSYNHPQFAEEAAAFNGVKIDGKSVWQQQPCGPSTLHNNVTIIDRFPSLAP 166
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BLAST of mRNA_P-littoralis_Contig1233.3.1 vs. uniprot
Match: A0A6H5KI01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI01_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 7.050e-29
Identity = 67/145 (46.21%), Postives = 87/145 (60.00%), Query Frame = 2 
Query:  143 PLTPTSPNAGIDITKRKAVRRSKRSRGFSLYDGDDSDDILLEDECESEEEKVIPPASKAKR-KKLRSDYRPVLPEHKEMTTQRLFTEGHVATGSFFLNHRNFAEDALRFNDVKIAGKEVWQQQPSGPSTLHNNIVIAEHLPSLAP 574
            PLTP SPNA       K ++    S+G                     E++  PPASK K+ KK R +Y+PV  +++ MTT RLF++GH+ATG+F  NH  FA++A  FN V I GK VWQ+QPSGPSTLHNN+ I +H  SLAP
Sbjct:   33 PLTPRSPNAAASSCGPKPLK----SKG---------------------EKRKTPPASKGKKPKKARHEYKPVPSQYEVMTTARLFSDGHIATGNFSYNHPQFAKEADAFNGVTIGGKRVWQRQPSGPSTLHNNVTIIDHFSSLAP 152
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BLAST of mRNA_P-littoralis_Contig1233.3.1 vs. uniprot
Match: A0A6H5K3Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q8_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.250e-22
Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 2 
Query:  320 KRKKLRSDYRPVLPEHKEMTTQRLFTEGHVATGSFFLNHRNFAEDALRFNDVKIAGKEVWQQQPSGPSTLHNNIVIAEHLPSLAP 574
            K KK R +Y+PV  +++ MTT RLF +GH+A  +F  NH  FA++A  FN V IAGK+VWQ+QPSGPSTLHN + I +H  SLAP
Sbjct:   68 KPKKSRHEYKPVPSQYEMMTTARLFGDGHIARSNFSYNHPQFAKEADTFNGVTIAGKQVWQRQPSGPSTLHNKVTIIDHFSSLAP 152
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BLAST of mRNA_P-littoralis_Contig1233.3.1 vs. uniprot
Match: A0A6H5L1U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U0_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 4.980e-21
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 2 
Query:  341 DYRPVLPEHKEMTTQRLFTEGHVATGSFFLNHRNFAEDALRFNDVKIAGKEVWQQQPSGPSTLHNNIVIAEHLPSLAP 574
            D  P  P H  MT +RLF+EG++ TG F  NH  F  +  +FN VK+ GK  WQ+QPSGPSTLHNNIV+ +H  SLAP
Sbjct:   32 DLPPTDPRHANMTIERLFSEGYIVTGGFSYNHPQFEREMAKFNGVKVNGKPTWQKQPSGPSTLHNNIVVTDHFRSLAP 109
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BLAST of mRNA_P-littoralis_Contig1233.3.1 vs. uniprot
Match: A0A6H5K5U5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U5_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.340e-16
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  374 MTTQRLFTEGHVATGSFFLNHRNFAEDALRFNDVKIAGKEVWQQQPSGPSTLHNNIVIAEHLPSLAP 574
            MTT+RLF+EGH+A GSF  NH  FAE+A  FN VK+  K V Q QPS PSTLH +IVIA++  SL P
Sbjct:    1 MTTERLFSEGHIAIGSFAYNHPQFAEEAAAFNTVKVNRKPVRQTQPSSPSTLHKSIVIADYFSSLTP 67
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BLAST of mRNA_P-littoralis_Contig1233.3.1 vs. uniprot
Match: A0A6H5KRD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD3_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.050e-14
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 2 
Query:  305 PASKAKRKKLRSDYRPVLPEHKEMTTQRLFTEGHVATGSFFLNHRNFAEDALRFNDVKIAGK 490
            P +  KRKK+R DYR VLPE+++MTT+RL  EGHVATGSFF++H +FA++A + N V I GK
Sbjct:   32 PCASKKRKKIRHDYRSVLPEYEDMTTERLVAEGHVATGSFFIDHNHFAQEAEKSNVVTIGGK 93
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BLAST of mRNA_P-littoralis_Contig1233.3.1 vs. uniprot
Match: A0A6H5K7M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.110e-12
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 2 
Query:  353 VLPEHKEMTTQRLFTEGHVATGSFFLNHRNFAEDALRFNDVKIAGK 490
            VLPE++EMTT+RLF EGHVATGSFF++H  FA++A +FNDV I GK
Sbjct:   28 VLPEYEEMTTERLFAEGHVATGSFFIDHNRFAQEAEKFNDVTIGGK 73
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1233.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KU06_9PHAE1.110e-3570.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFC5_ECTSI3.220e-2960.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KI01_9PHAE7.050e-2946.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3Q8_9PHAE3.250e-2256.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1U0_9PHAE4.980e-2155.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5U5_9PHAE3.340e-1661.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRD3_9PHAE1.050e-1459.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7M5_9PHAE4.110e-1269.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1233contigP-littoralis_Contig1233:20410..22657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size577
Hectar predicted targeting categoryother localisation
Exons4
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789538.572394-CDS-P-littoralis_Contig1233:20409..206131680789538.572394-CDS-P-littoralis_Contig1233:20409..20613Pylaiella littoralis U1_48CDSP-littoralis_Contig1233 20410..20613 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789538.5825357-UTR-P-littoralis_Contig1233:20613..206851680789538.5825357-UTR-P-littoralis_Contig1233:20613..20685Pylaiella littoralis U1_48UTRP-littoralis_Contig1233 20614..20685 -
1680789538.596226-UTR-P-littoralis_Contig1233:21193..213011680789538.596226-UTR-P-littoralis_Contig1233:21193..21301Pylaiella littoralis U1_48UTRP-littoralis_Contig1233 21194..21301 -
1680789538.6052554-UTR-P-littoralis_Contig1233:22060..221341680789538.6052554-UTR-P-littoralis_Contig1233:22060..22134Pylaiella littoralis U1_48UTRP-littoralis_Contig1233 22061..22134 -
1680789538.613628-UTR-P-littoralis_Contig1233:22538..226571680789538.613628-UTR-P-littoralis_Contig1233:22538..22657Pylaiella littoralis U1_48UTRP-littoralis_Contig1233 22539..22657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1233.3.1prot_P-littoralis_Contig1233.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1233 20410..20613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1233.3.1

>prot_P-littoralis_Contig1233.3.1 ID=prot_P-littoralis_Contig1233.3.1|Name=mRNA_P-littoralis_Contig1233.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
MTTQRLFTEGHVATGSFFLNHRNFAEDALRFNDVKIAGKEVWQQQPSGPS
TLHNNIVIAEHLPSLAPL
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mRNA from alignment at P-littoralis_Contig1233:20410..22657-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1233.3.1 ID=mRNA_P-littoralis_Contig1233.3.1|Name=mRNA_P-littoralis_Contig1233.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2248bp|location=Sequence derived from alignment at P-littoralis_Contig1233:20410..22657- (Pylaiella littoralis U1_48)
CTGAGTTGTCATCTCTTTGTGCTCGGGGAGAACGGGCCGGTAGTCTGACC
GAAGCTTTTTCCTCTTCGCCTTCGACGCGGGGGGCTGTTGTATTCCAAAG
AAGTGGCAATATGAAACAGGTGGGACGGAGCAAATGATCACGGCGTGAAA
ACCAAACGACTTCAACAAACGACAGCAGCGACGTATTGCTATTAGATCGA
ACGTATAACCGGAACAAAACGTTGTTTTCATGTTCGGTAGTTCTATTTAA
CCCCACTAATGACACTTACATATAACGTACCATTGGTCAAGCAGGAGACT
AGATAACATGGAGAGGGGAGGGAGGGTTGTGGCGAAGGGGGGGAGGGGGT
GGCGGTGATCTCATTTCGAGAAGCGTCGAAATGGAAACCCAATCCAAGGC
GTGTTACAGGATTCGGGGGGGGAGGGGATCGTTGCTAATTCGCACGTATA
GTACGATAGAAGTATAAACACAAAGGACCAGTTGTTTCTATCCCCGCCCC
CCGCCCTCTCTCGTCACCCCCAGCGCCAAGTGAGCATCCTCGGGCTCCAC
TGACGCCCACGTCGCCCAACGCCGGAATAGACATAACCAAAAGAAAGGTG
AGAAACAATCCAATTTCCGAGAGATATTAGACGATTTTGAATACTGTTGT
ACTCGGGAGACCAGCGCCACTGCCCAATGCCGACATTGTTTCATGGCTCT
CTCTTCCAGCATACCCGTCAATGCCGACCCGTGATGTAGGGGTTATTGCC
CCCGTCAGACTTGTTGAAGTCTGTGGATTCTTTGTGGATACTCGGTGGAT
AAAATATTTTTAGACCGTGTATTGTCCGGTGTCTCAAAGGGTAGAGACAG
AGAGAGAGAGTTGTCTCGGAAGGCACTTCACACACACAAGGCAAATGCCG
CTTCTTCTGCCACGCCCTTTGTTGTTAACCGTCTCCGCCATCGAAAAGTG
AAAACAATTCATGTAGACAGGTCTACAATTAGAGACGTATCTCCATGTCG
ATATCTGCCAGTTCAACGTTGAAGACAGGTCTGATCTGTCGGTGGCTGTC
TCTCCCCTCCCCCCCTCCGTTTGCGCGCCCACACTCGCACACTCTCCACA
CATCCACCTTTCGTCGTGGATCTCACACTGAAAAGGATGAAGAGCTAGTT
TTTATGTTGCTCGATTAAACTCGCACGATTCCGTGAGAGGAAAGGTGTGT
GCCACGAAAAAAATCATCTTGTTTGAGTAAGCATGAGAGGAGAGTATCTC
GTCAACACCGCGAGAAATAGAGGAAGTGGAGAGCGATTCCCACGGGTCTC
CAAATACGCGCCCTCCTGCCGACGTTGTCATACTTATCGCGCTTCCATCC
GTGCAGGCTGTTCGGAGGTCAAAGAGATCCCGTGGTTTCTCTCTATACGA
CGGTGACGACAGCGACGACATTCTTCTGGAGGATGAGTGCGAAAGCGAGG
AGGAGAAGGTGATTGTCAGTACCAGTACAAACCGCTTTACGTCGTGCGTT
TCATTCTACGACTGATTGCATTCGAATCAAGCGACAATCTGGTTTTAGAG
AGAGAGGGGGGGGCGGGGATAGAAACAACTGGTCCTTTGTGTTTATACTT
CTATCGTACTATACGTGCGAATTGCAACGATCCCCTCCCCCCGAATCCTG
TAACACGCCTTGGATTGGGTTTCCATTTCGACGCTTCTCGAAATGAGATC
ACCGCCACCCCCTCCCCCCCTTCGCCACAACCCTCCCTCCCCTCTCCATG
TTATCTAGTCTCCTGCTTGACCAATGGTACGTTATATGTAAGTGTCATTA
GTGGGGTTAAATAGAACTACCGAACATGAAAACAACGTTTTGTTCCGGTT
ATACGTTCGATCTAATAGCAATACGTCGCTGCTGTCGTTTGTTGAAGTCG
TTTGGTTTTCACGCCGTGATCATTTGCTCCGTCCCACCTGTTTCATATTG
CCACTTCTTTGGAATACAACATCCCCCCGCGTCGAAGGCGAAGAGGAAAA
AGCTTCGGTCAGACTACCGGCCCGTTCTCCCCGAGCACAAAGAGATGACA
ACTCAGCGACTCTTCACCGAGGGCCATGTGGCTACCGGCAGCTTCTTCCT
CAATCACAGAAATTTCGCGGAGGATGCCCTGCGGTTCAACGACGTCAAGA
TAGCCGGGAAAGAGGTGTGGCAACAACAACCCAGCGGTCCTTCCACCCTC
CACAACAACATAGTGATCGCGGAACACCTCCCTTCGCTGGCCCCATTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1233:20410..22657-

>mRNA_P-littoralis_Contig1233.3.1 ID=mRNA_P-littoralis_Contig1233.3.1|Name=mRNA_P-littoralis_Contig1233.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig1233:20410..22657- (Pylaiella littoralis U1_48)
ATGACAACTCAGCGACTCTTCACCGAGGGCCATGTGGCTACCGGCAGCTT
CTTCCTCAATCACAGAAATTTCGCGGAGGATGCCCTGCGGTTCAACGACG
TCAAGATAGCCGGGAAAGAGGTGTGGCAACAACAACCCAGCGGTCCTTCC
ACCCTCCACAACAACATAGTGATCGCGGAACACCTCCCTTCGCTGGCCCC
ATTA
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