mRNA_P-littoralis_Contig1233.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1233.11.1
Unique NamemRNA_P-littoralis_Contig1233.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1233.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1233contigP-littoralis_Contig1233:41143..43938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size519
Hectar predicted targeting categoryother localisation
Exons3
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789538.4102995-UTR-P-littoralis_Contig1233:41142..413161680789538.4102995-UTR-P-littoralis_Contig1233:41142..41316Pylaiella littoralis U1_48UTRP-littoralis_Contig1233 41143..41316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789538.4219646-CDS-P-littoralis_Contig1233:41316..413461680789538.4219646-CDS-P-littoralis_Contig1233:41316..41346Pylaiella littoralis U1_48CDSP-littoralis_Contig1233 41317..41346 +
1680789538.4372048-CDS-P-littoralis_Contig1233:41631..417811680789538.4372048-CDS-P-littoralis_Contig1233:41631..41781Pylaiella littoralis U1_48CDSP-littoralis_Contig1233 41632..41781 +
1680789538.4469411-CDS-P-littoralis_Contig1233:43773..439381680789538.4469411-CDS-P-littoralis_Contig1233:43773..43938Pylaiella littoralis U1_48CDSP-littoralis_Contig1233 43774..43938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1233.11.1prot_P-littoralis_Contig1233.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1233 41317..43938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1233.11.1

>prot_P-littoralis_Contig1233.11.1 ID=prot_P-littoralis_Contig1233.11.1|Name=mRNA_P-littoralis_Contig1233.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MAVAVRFLSECDGALHQTRGRTAAAKQAATFKRSMPVSTADKGNGPKCGK
SSTSSRDSPVDYPGIEGTRSEAASEFHPDEGEEKGESSDSSEDIFAQCFP
NHKFNNPFVPSNLRA
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mRNA from alignment at P-littoralis_Contig1233:41143..43938+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1233.11.1 ID=mRNA_P-littoralis_Contig1233.11.1|Name=mRNA_P-littoralis_Contig1233.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2796bp|location=Sequence derived from alignment at P-littoralis_Contig1233:41143..43938+ (Pylaiella littoralis U1_48)
CCTCGGGCGTGGGTATACATGCGACATCTTGTGGCACTTATACGCAGAAT
GAACTACTTGTCATGGGCACCGAGGGCGGAGCGCTGTCCACGCATTTCAT
CGGCCATTTCCCACCAATGGCGAAGGAGACAGGAGTAGATTCGTACACGC
ATATGATTCTGATTGGGGGACGTTATGGCTGTGGCTGTGAGATTTTTGTC
CGAGGTGAGCTATGTTGAGTCTCTTTTCAAGTCAAATAATCAGTTTATCT
TGAAAAATCAACAAGCCTGTTTTTTTTTTCATGGGGTCGACGTCTACCCC
TCGCCCAAGGCGGACTCGATCGCGCACCAGGCGCCACCCTCTCACTCTTC
CTTCAGCCCTCTCATCCACACCCTCGACATCCTATACCCTTCTGCACAAG
GCCACAACAGCACTATGTCTTCTTCGCCTGCATCCCAACCGAAATCCTCT
CGTCCGTCGCGCCCTCTCGCCCCTCCTTCCGGCAACAAGTGTGACGGAGC
CCTGCATCAAACACGGGGACGCACGGCCGCAGCGAAACAGGCGGCAACGT
TCAAGCGCTCCATGCCTGTGTCCACGGCCGACAAGGGCAACGGCCCGAAG
TGTGGGAAGTCATCTACCTCTTCCCGGGACTCGCCCGTGGTAAGCCCGTA
CTACCTGTAGGGGGTTCTGTAATGATGCACATCATGCTGTCATCTCAAAC
ATCAATCTACAGCAGGAGTAGGTGTTAACGATTTTAATCAGTGTGTGACG
ACAGCAGAGTTCTGATCCTCCCCGCGTTGTACGTATTCCTAAAGTCGAAG
TACCTGCTCTGCTGCTGTACGCTGCTGTTTTGCTACTGCTGTAGCACTGC
TGTGAGACGGACGAGTGCATATGTCCTTGTGAGAGTAGGATGTGTGTCCA
TGAACAATAACACGAGCAGTGAACAAATAGTACACCATGATCCGCAAATC
ATCGCCTGCCCATCTCATTTCGTGTGTGCTTCTTCAGTCCATCAATGTCG
TCGATAACATAAGACACGGGGCCTGAGTGGATTACAAAAGAAACACGTGC
AGATCCCTGTAGACCGGACGGTGGTAATTTACTCGAAGTGTGGGATCGGG
ATTGAGAGGCAGTGTGCGTCACAGCAGTGGCCACTTCTCAAGTAACTGCG
TTTAGCTGTGTGCGTTGCTGTCGGGTGTTGGCACCTCGCTTCGCTCGTTC
ATGAATTGAGGATGTTTTACTCGAGAAGCGTCCACGGCAGTGACGCACAC
TGCTTCTCGATCCCGATCCCACACTTGTAGTACATACCATACCAAAACAG
CACAGCACACACCGAAACAGCCATGTTTTGCGCAAAAGGATTTCTACATG
TGCCAGTAGGAGAACGAAAAAAATGTTGAGAGCCGAGAGAAGGAGAGAGC
ATTTTATTCCTTCTGTTTGGAGCACGAGACACACCAGAGGGCACGACCCA
CAAGTCCACACCACTACAGCAGCAGTGTGTCTGGTGAGTGTGTAAGGTCT
CTCTCTCTTCTCTCTCTGCGAGGGCACGGAAGGAACAACACGGGAGAGAG
CTAGAGGAATACGGCAGAGCCCTGCTGCTGCTGCTGCTACACTGACTGGG
TGCTGTACAGCAGACTTCGGGGCCTCACGTGTCTTCTCGTGGCTGTCACC
AGCAGTAGAGCAGTGGAGGAGTACACCACTGCTGTGCTGCTGTGTGTTGT
GCGCGATGCGCGGTGGATGGGGAAACCaacgcagAACGTCAGTACCACCC
GACATACGGCTAGTACGCCGCCTTTCATTTTTCGGCCGCCAAACACGCTG
ATAAATACATACCGACGGCGACCGTGCTGCACGAAGAGGGCACGGGCTGA
GGTGAAACCAGCAGCGATGGGTAGATCGTATTTTTCTCGTCAGTTCAAGC
CCTTGGTTGTTGCGATCTGTGCTGAGCTGGTGCCGTGGTGGTGCGAAAGG
TGCGAAATATTATGGCCAAACACGCACACACACACACACACACACACACA
CACCGAAAAGTAGGGCCGATAAATCCGATAAATAAAAGGTCCCCCATGCA
ACTTTTTTCTTTTTTTTCTACTCTACACGTACATCCATACACAATTAATC
GCGACCAGTCGGTATGAATTCAAAGCAAGTTCGAGCGCTGCTTCGCAACA
GCACTCTTCACTTACGGCTCGCTTCGCTCGGCGGCTTCTCAAAAAGATTA
TACACACCACTAGCGCTCAAGTTAGTGCAAGACCCCCGAACATATCGTGC
TCAGTGAAACAGCAGCGCCTAGTGTGTCTATTCGTGTCTTATCCGCCCCC
GGTCCCCCTTTTAGATGGTACTCGAACATTTCACATTTTTGACTGACTCC
GTGCTGTCTCGCGTCAGATTGCTGAGAGACCAAGCAACAGCGCACATTAT
TTATGCTGTCGCACGCATATAATGGAGAGAATCGAATGGTACTTTCCTCG
TGCCGCCTTTGGTGTGTGCACTACATATCTCAGTACTTCGTAGCCTCAAA
GTGCCCTAGAGTTGGTCGTACCAGGATGGTACATGTTTGTATGATAATGT
CCAGCATCTGAATAACGACGTACGCATACACACCCCTCCCTACCCGTCGG
TGTCCCTCTTGTTATATGTGCGCTGGCCCAGGATTATCCTGGTATCGAGG
GCACCCGGTCGGAGGCGGCGTCCGAATTCCACCCCGACGAAGGAGAAGAG
AAAGGAGAGAGTTCGGACAGCAGTGAGGACATCTTCGCACAGTGTTTTCC
CAACCATAAGTTCAACAACCCCTTCGTTCCGAGCAACCTCCGTGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1233:41143..43938+

>mRNA_P-littoralis_Contig1233.11.1 ID=mRNA_P-littoralis_Contig1233.11.1|Name=mRNA_P-littoralis_Contig1233.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig1233:41143..43938+ (Pylaiella littoralis U1_48)
ATGGCTGTGGCTGTGAGATTTTTGTCCGAGTGTGACGGAGCCCTGCATCA
AACACGGGGACGCACGGCCGCAGCGAAACAGGCGGCAACGTTCAAGCGCT
CCATGCCTGTGTCCACGGCCGACAAGGGCAACGGCCCGAAGTGTGGGAAG
TCATCTACCTCTTCCCGGGACTCGCCCGTGGATTATCCTGGTATCGAGGG
CACCCGGTCGGAGGCGGCGTCCGAATTCCACCCCGACGAAGGAGAAGAGA
AAGGAGAGAGTTCGGACAGCAGTGAGGACATCTTCGCACAGTGTTTTCCC
AACCATAAGTTCAACAACCCCTTCGTTCCGAGCAACCTCCGTGCA
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