mRNA_P-littoralis_Contig123.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig123.38.1
Unique NamemRNA_P-littoralis_Contig123.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig123.38.1 vs. uniprot
Match: A0A6H5KLN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN5_9PHAE)

HSP 1 Score: 296 bits (757), Expect = 1.410e-92
Identity = 177/349 (50.72%), Postives = 220/349 (63.04%), Query Frame = 2 
Query:  104 SLVMKAAVGLTFGVILSAAPAVIADECHNICAEVKKGISFKAGCTPFRNSLPKPKVSSKCQSGFKAAIDMNCYDACVNGGHLQPYISEQRLDEVCKGTVNETPRPLCHDACVRGYRSGVNDMSTSLAKFMDEAAPKILAALQEDTAVRQAAQSAHDIGPVTSFTTVETDVKPIASTEGVLGTGGREAVKT--GAVVPL----EHDEI--LDENVGEREEVEGVDEDLPPSVDEIETVED---------NAAVAIDGEKKEK------KEAGNQDEDIYMWIEDE-EMVLLSLPITVDNAQKELTIFEGDDAMDVVQAFCRENMPGEGAACADELIRVVQEKISPGHAEE 1078
            SL MKA +  T  VILS   A  ADECH+ICA VKK + FKAGC+ FRNSLP+PKVSSKC +GFKAA++ NC+DACVNGG LQP++ E+RLDE C G +N+TPRPL        YRSGV DM+TSL K M EA+P ++ AL+ +T  RQAAQ  H +    S T   T   PIA  E  +    + A  +  G   P+    EH E   L+   G + + + + ++ P +  +I  VED         +A +A DGE   +      K+  N+ ED YMWIEDE E VLLSLPITVDN  KEL I +GD  +DVV AFCRENMP EG ACADELIRVVQ+KIS G A +
Sbjct:   21 SLNMKAPLVFTINVILSVT-ATSADECHDICANVKKSVGFKAGCSEFRNSLPRPKVSSKCHTGFKAAVERNCHDACVNGGRLQPFLVERRLDEACNGALNDTPRPLXXXXXXXXYRSGVKDMTTSLGKLMAEASPAVITALKGNTLSRQAAQKTHVVATDDSKTVEGTSEGPIAFAEDAIARPSQMADLSDHGNDTPVPEEKEHGEAQDLESKGGLQTDAQVIGDEPPLAAGDIYKVEDEPDLARDADSALIAPDGEMDAQHKLAAIKDGENKGEDNYMWIEDEKENVLLSLPITVDNVLKELVIVKGDQPLDVVLAFCRENMPEEGPACADELIRVVQDKISTGKAPQ 368
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BLAST of mRNA_P-littoralis_Contig123.38.1 vs. uniprot
Match: D7FJ15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ15_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 4.690e-34
Identity = 117/329 (35.56%), Postives = 143/329 (43.47%), Query Frame = 2 
Query:  113 MKAAVGLTFGVILSAAPAVIADECHNICAEVKKGISFKAGCTPFRNSLPKPKVSSKCQSGFKAAIDMNCYDACVNGGHLQPYISEQRLDEVCKGTVNETPRPLCHDACVRGYRSGVNDMSTSLAKFMDEAAPKILAALQEDTAVRQAAQSAHDIGPVTSFTTVETDVKPIASTEGVLGTGGREAVKTGAVVPLEHDEILDENVGEREEVEGVDEDLPPSVDEIETVEDNAAVAIDGEKK------EKKEAGNQDEDIYMWIE-DEEMVLLSLPITVDNAQKELTIFEGDDAMDVVQAFCRENMPGEGAACADELIRVVQEKISPGHAEE 1078
            MKA +  T  VILS   A  ADECH+ICA+VKK + FKAGC+ FRNSLP+PK                   A   G   +P    Q  D    G     P    H                                               +I  + S   ++TD +        +G G   AV  G +  +E +  L  +                         D+A +A DGE        E K+  N+ ED YMWIE +EE VLLSLPITVDN  KEL IFEGD  +DVV AFCR+NMP EG ACADELIRVVQ+KIS G A +
Sbjct:    1 MKAPLAFTVNVILSVT-ATSADECHDICADVKKSVGFKAGCSEFRNSLPRPKPI-----------------AFAEGAIARP---SQMADLSYHGKDTPVPEEKEHG----------------------------------------------EIQVLESKGGLQTDAQ-------AMGDGPPLAV--GDIYKVEDEPDLARDA------------------------DSALIAPDGETDAQHELPEIKDGENKGEDNYMWIEHEEENVLLSLPITVDNVMKELVIFEGDQPLDVVLAFCRDNMPEEGPACADELIRVVQDKISTGKAPQ 229
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BLAST of mRNA_P-littoralis_Contig123.38.1 vs. uniprot
Match: A0A7S2BSI7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BSI7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.160e-5
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 2 
Query:  875 IEDEEMVLLSLPITVDNAQKELTIFEGDDAMDVVQAFCRENMPGEGAACADELIRVVQEKIS 1060
            +E+   V+ +LP+TVD +   L I+EG  A + V AFC+++M   G AC D+L+  V++KIS
Sbjct:  225 VEEVRKVVATLPVTVDESDINLVIYEGQQAAEAVDAFCKKHMASAGTACMDQLLPHVEKKIS 286
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig123.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KLN5_9PHAE1.410e-9250.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ15_ECTSI4.690e-3435.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2BSI7_9STRA1.160e-541.94Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig123contigP-littoralis_Contig123:192041..195398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1549
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_004800.1
Cds size972
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig123.38.1prot_P-littoralis_Contig123.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig123 192153..194933 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789533.346727-UTR-P-littoralis_Contig123:192040..1921521680789533.346727-UTR-P-littoralis_Contig123:192040..192152Pylaiella littoralis U1_48UTRP-littoralis_Contig123 192041..192152 +
1680789533.404734-UTR-P-littoralis_Contig123:194933..1953981680789533.404734-UTR-P-littoralis_Contig123:194933..195398Pylaiella littoralis U1_48UTRP-littoralis_Contig123 194934..195398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789533.359426-CDS-P-littoralis_Contig123:192152..1923081680789533.359426-CDS-P-littoralis_Contig123:192152..192308Pylaiella littoralis U1_48CDSP-littoralis_Contig123 192153..192308 +
1680789533.3686824-CDS-P-littoralis_Contig123:192491..1927221680789533.3686824-CDS-P-littoralis_Contig123:192491..192722Pylaiella littoralis U1_48CDSP-littoralis_Contig123 192492..192722 +
1680789533.379356-CDS-P-littoralis_Contig123:193815..1939321680789533.379356-CDS-P-littoralis_Contig123:193815..193932Pylaiella littoralis U1_48CDSP-littoralis_Contig123 193816..193932 +
1680789533.389132-CDS-P-littoralis_Contig123:194206..1944731680789533.389132-CDS-P-littoralis_Contig123:194206..194473Pylaiella littoralis U1_48CDSP-littoralis_Contig123 194207..194473 +
1680789533.397338-CDS-P-littoralis_Contig123:194732..1949331680789533.397338-CDS-P-littoralis_Contig123:194732..194933Pylaiella littoralis U1_48CDSP-littoralis_Contig123 194733..194933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig123.38.1

>prot_P-littoralis_Contig123.38.1 ID=prot_P-littoralis_Contig123.38.1|Name=mRNA_P-littoralis_Contig123.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=324bp
MKAAVGLTFGVILSAAPAVIADECHNICAEVKKGISFKAGCTPFRNSLPK
PKVSSKCQSGFKAAIDMNCYDACVNGGHLQPYISEQRLDEVCKGTVNETP
RPLCHDACVRGYRSGVNDMSTSLAKFMDEAAPKILAALQEDTAVRQAAQS
AHDIGPVTSFTTVETDVKPIASTEGVLGTGGREAVKTGAVVPLEHDEILD
ENVGEREEVEGVDEDLPPSVDEIETVEDNAAVAIDGEKKEKKEAGNQDED
IYMWIEDEEMVLLSLPITVDNAQKELTIFEGDDAMDVVQAFCRENMPGEG
AACADELIRVVQEKISPGHAEEH*
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mRNA from alignment at P-littoralis_Contig123:192041..195398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig123.38.1 ID=mRNA_P-littoralis_Contig123.38.1|Name=mRNA_P-littoralis_Contig123.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3358bp|location=Sequence derived from alignment at P-littoralis_Contig123:192041..195398+ (Pylaiella littoralis U1_48)
GTTTTTCCTTCTGGTTCATCGTTCAGACGACAGTGCAGGAGCGACGTTTT
AATCGTGTTTTGTATACTGTACCTTCTCTCACTTACTTCTCACACAAACT
CTCTCACTGGTCATGAAGGCTGCGGTGGGGCTCACGTTCGGCGTGATACT
TTCGGCGGCTCCCGCGGTCATAGCTGACGAATGCCACAACATTTGCGCGG
AAGTGAAGAAAGGAATCAGTTTCAAGGCTGGTTGTACCCCATTCCGCAAC
TCGCTCCCTAAACCCAAGGTCGGTCGCCTGCTGCATCGTCCCGCACCCAA
AGCGCGATGATTACCGCCTCGCATTTTTGTGTCGCGATCTTGCGTGCCGC
GAATTTAGGGTAAGCAAGCGAAGGTGTTCTGGTATTTGCGTTCTGGTGTA
GCTTTAAACCCTTTGGCCGCGCCACTTGCCTGCCTGTACACGGGCGTACA
GGTATCGAGCAAATGCCAGTCGGGTTTTAAGGCGGCCATCGACATGAACT
GCTACGACGCCTGCGTCAATGGAGGCCACCTTCAGCCGTACATTTCAGAG
CAACGATTGGACGAAGTATGCAAGGGTACTGTGAACGAGACCCCAAGGCC
GCTCTGTCACGACGCTTGCGTTCGAGGCTATCGTTCAGGAGTAAATGATA
TGTCCACCTCGCTTGCAAAATTTATGGACGAGGTGAGCTGATTCAGTAGT
GTCATATCATATCTCGTCTACAATTAAAGGGATGTCAACACACACAACAC
ACACAAACACATGCAACCATATTCGTCGGAGTTTCACCTCACATCCAAAA
CGATGGCTCTCGAGGCTAGCGTATACATATCTGGAGCAGACGGGCGTCTG
CGGTGTTTCTCTGCTGGTTCCCTTACTTTAAGTCGTTCATGACAAAATAC
CTGGTACTTTGAAAGCGGCTATGCTGTTAGTAAAAGCAGATTCGGCTTCG
CCGACGAGGGTAGGGACCGCGGACCCCTGCTCGCGAGAAAAAATCTCACG
CATGTACCGCAGAAGGAAGGTGGGGGTAACTCCTCCTGTGTTGACCTTCC
TCCTGTGTGACCCCGTCGATGGGCCTAGCCTGTAGTTTGCAGACTAGCGT
GCCAGAGAATATGGGATGACAACACACACACACACACACCTGGTACAAAA
TAGCAGCTTATGATGCAACCTGCTGCAGTATACGAGTACTGTACAACACC
TGTACAACACGAGTGAGTCGTGCAAAGTACTTGGTGGTGCATACAAGGCA
TGATGCAAAATAATACGGAGTACTTTATAAAGATTGCCCCGCCACCTAGA
GCAGACGCGTAAGAAATACCAGGTAGTTGTTTTGAACGAGGCTCGCGGCT
TGTAGGCCAGCCTTGATCGAGCACTTGGTTGAACGTGCCACGTACGTTCA
CATTTCGACTTTTTTTTTATTGGTCCGCTGAATTGCGGGGCGCTTGTTCT
TGTTCCGATGGTTGCAATACCGAGAGTACCCCAAATACAGCAGGACATTC
AACTTTTATTTTGTCCTGCATTCATTCCGATATGCTTTACGAAGTCAAAT
CTGACAAAATCCAGAACATCGAACATCAAGTCAGCAAAATACGCCCCGTG
TTTGTAACACAAATCGGCCGCAACGCGCAGCTTGGAACCCATATGACCAA
GTTTCGTTTCAATAAATTCGAAGCATCCATTAATTAGCTCTCCTCTTGCC
GGCTTCGTTTATTGACACCACGCTACAATCTACAGTACCGTCGATGCTTC
CGTTACATTCGTCTGCGCAAACCAGGCTGCTCCCAAGATCCTCGCCGCGT
TGCAGGAAGACACTGCGGTTCGCCAAGCAGCCCAAAGCGCTCACGATATT
GGTCCTGTTACCTCCTTCACGACAGTCGAGACAGATGTGAAGGTGATGTA
ACATTATACGGGAGGAAGCCACTTTTTTTATAGTAATGTGCTGCTGTAAT
GGCACATCGAGGAAGTCGAGTGCGATATCTATATGTATATCGGTCTGCAA
GACTGGGCATTTCGAAAGGCGAATTTGTCACTTCCCACAGCGAATACCGG
CAACTCCGACTGACTTTCCCAAAGGCATGAGAAAAAATGTGGAGCTCATG
GCTTATCATGTTCCCGTATGTGTCACTTCCTTCCTCCTTCATTTTGCCGT
GCCGCTCCCCCATCAGCCGATCGCCTCCACGGAAGGCGTCCTTGGCACTG
GAGGAAGAGAGGCTGTGAAGACCGGTGCAGTGGTGCCGTTAGAGCACGAC
GAGATTCTGGACGAAAATGTTGGAGAGCGCGAAGAGGTTGAAGGTGTCGA
TGAGGACCTCCCGCCCTCGGTGGATGAGATTGAAACTGTCGAGGACAACG
CGGCTGTTGCCATTGATGGCGAAAAGAAAGAGAAGAAAGAAGCAGGAAAC
CAAGACGAAGACATCTACATGTGGATCGAAGATGTAAGGCGACTTGTGCG
GGGTTAAAATCAACGTGTTTGTTGCAGCCTTTAGTTCATGGCGAAGCTAC
TTGTCTGCCGAAGGTTTCGCTTAACCAGCGATGTTTGGATGTTCTCTTTG
GCGACTGTCCTCCACCCCCACGATTAATATCATCGTCAACTACGTTTCAC
CATGTTTCTCTCAGAGGAAGATGGTTTGATAATCTCGTGAAGATCATTCT
AATAACTATTTCCACCCAACTCTCGTGTATATCAACACCCAGGAGGAAAT
GGTCCTGCTATCGCTTCCCATTACTGTTGACAACGCACAGAAGGAGCTCA
CGATCTTTGAAGGTGACGACGCAATGGACGTAGTACAGGCGTTCTGCAGG
GAGAACATGCCGGGAGAGGGTGCCGCCTGCGCAGATGAACTCATTCGTGT
GGTGCAAGAAAAAATCTCCCCCGGTCATGCGGAAGAGCACTAGGAGGGTC
AACGCGTTAGAATCAATCTCGCGAGTGGCCCTCGAAGACGGGGTATTGGC
TGATAAATATCACAGATTTGAAAGCAGAAGTGGGATCAGGCATGGAATAG
ATGGTACGCGTCTAGAGATGACGAGCCTCGCCCACACGAGTGTGTGTATG
ATACCTGGAAAATAGCGCACACTTGTCTGGGCCTCTGCGTTCAACGATTG
GGCATTGGCCGCCGAGCCAAAACATTTCCAAGAGTCGTACGCGTATGATG
CATGGGGGGAGTATGTGCCATCTACGTGCCGAAAAATCTGTCATGTCCGT
TGTCTTGCTGCCGTTTGGTGGTGGATACATTAAGTATCGATGGGCGATTT
TGAGGCGAACCGGCAGCAACAAATAGAGGTTCATCTACTTGGAAAAAGTA
GCACACGCATTGTCACCTTTCGTGCCTTGGTATCTGGCAATCGCATCGAT
GTCACGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig123:192041..195398+

>mRNA_P-littoralis_Contig123.38.1 ID=mRNA_P-littoralis_Contig123.38.1|Name=mRNA_P-littoralis_Contig123.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=972bp|location=Sequence derived from alignment at P-littoralis_Contig123:192041..195398+ (Pylaiella littoralis U1_48)
ATGAAGGCTGCGGTGGGGCTCACGTTCGGCGTGATACTTTCGGCGGCTCC
CGCGGTCATAGCTGACGAATGCCACAACATTTGCGCGGAAGTGAAGAAAG
GAATCAGTTTCAAGGCTGGTTGTACCCCATTCCGCAACTCGCTCCCTAAA
CCCAAGGTATCGAGCAAATGCCAGTCGGGTTTTAAGGCGGCCATCGACAT
GAACTGCTACGACGCCTGCGTCAATGGAGGCCACCTTCAGCCGTACATTT
CAGAGCAACGATTGGACGAAGTATGCAAGGGTACTGTGAACGAGACCCCA
AGGCCGCTCTGTCACGACGCTTGCGTTCGAGGCTATCGTTCAGGAGTAAA
TGATATGTCCACCTCGCTTGCAAAATTTATGGACGAGGCTGCTCCCAAGA
TCCTCGCCGCGTTGCAGGAAGACACTGCGGTTCGCCAAGCAGCCCAAAGC
GCTCACGATATTGGTCCTGTTACCTCCTTCACGACAGTCGAGACAGATGT
GAAGCCGATCGCCTCCACGGAAGGCGTCCTTGGCACTGGAGGAAGAGAGG
CTGTGAAGACCGGTGCAGTGGTGCCGTTAGAGCACGACGAGATTCTGGAC
GAAAATGTTGGAGAGCGCGAAGAGGTTGAAGGTGTCGATGAGGACCTCCC
GCCCTCGGTGGATGAGATTGAAACTGTCGAGGACAACGCGGCTGTTGCCA
TTGATGGCGAAAAGAAAGAGAAGAAAGAAGCAGGAAACCAAGACGAAGAC
ATCTACATGTGGATCGAAGATGAGGAAATGGTCCTGCTATCGCTTCCCAT
TACTGTTGACAACGCACAGAAGGAGCTCACGATCTTTGAAGGTGACGACG
CAATGGACGTAGTACAGGCGTTCTGCAGGGAGAACATGCCGGGAGAGGGT
GCCGCCTGCGCAGATGAACTCATTCGTGTGGTGCAAGAAAAAATCTCCCC
CGGTCATGCGGAAGAGCACTAG
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