mRNA_P-littoralis_Contig123.105.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig123.105.1
Unique NamemRNA_P-littoralis_Contig123.105.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig123.105.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 2.450e-56
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    1 YTNGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGNLPSGQTGDDAVNNLLDGLYSKTKGSAESPVQEDDLVESTPAADGGKAPEEKADG 273
            YTNGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGNLPSGQTGDDA+NNLLDGLYSKTKGSAESPVQEDDLVESTPAADGGKAPEEKADG
Sbjct:  114 YTNGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGNLPSGQTGDDAINNLLDGLYSKTKGSAESPVQEDDLVESTPAADGGKAPEEKADG 204
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BLAST of mRNA_P-littoralis_Contig123.105.1 vs. uniprot
Match: D7FPI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI6_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.010e-16
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    1 YTNGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGNLPSGQTGDDAVNNLLDGLYS--KTKGSAESPVQEDDLVESTPAADGGKAPEEKAD 270
            +T+GKKLW +FD  M  +KKF NP+WD +V+GQPG  LPSG   +DA+  LL+G+Y      G+ E+P++    +E     +GG + +E  +
Sbjct:  120 FTHGKKLWKRFDNIMRALKKFYNPVWDSFVEGQPGDQLPSGSQDEDAIEYLLNGVYHTISNTGNEENPIE----LEERRGGEGGDSEDESGE 207
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BLAST of mRNA_P-littoralis_Contig123.105.1 vs. uniprot
Match: A0A6H5KAW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW9_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.590e-7
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:   64 CNPIWDRYVKGQPGGNLPSGQTGDDAVNNLLDGLYSKTKGSAESPVQEDDLVESTPAADGGKA 252
            C  I     KGQPG NLPSG+  +DA++ LL+G+Y ++ G+AE P++ +D  +    ADGG A
Sbjct:    3 CRRIGPHVSKGQPGDNLPSGEQVEDALDYLLNGVYHRSSGNAEDPIELEDGDDDV--ADGGGA 63
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig123.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE2.450e-5698.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FPI6_ECTSI1.010e-1641.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAW9_9PHAE3.590e-744.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig123contigP-littoralis_Contig123:485987..486476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size276
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789536.9337735-CDS-P-littoralis_Contig123:485986..4860691680789536.9337735-CDS-P-littoralis_Contig123:485986..486069Pylaiella littoralis U1_48CDSP-littoralis_Contig123 485987..486069 +
1680789536.9426968-CDS-P-littoralis_Contig123:486284..4864741680789536.9426968-CDS-P-littoralis_Contig123:486284..486474Pylaiella littoralis U1_48CDSP-littoralis_Contig123 486285..486474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig123.105.1prot_P-littoralis_Contig123.105.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig123 485987..486474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig123.105.1

>prot_P-littoralis_Contig123.105.1 ID=prot_P-littoralis_Contig123.105.1|Name=mRNA_P-littoralis_Contig123.105.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
YTNGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGNLPSGQTGDDAVNN
LLDGLYSKTKGSAESPVQEDDLVESTPAADGGKAPEEKADG
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mRNA from alignment at P-littoralis_Contig123:485987..486476+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig123.105.1 ID=mRNA_P-littoralis_Contig123.105.1|Name=mRNA_P-littoralis_Contig123.105.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=490bp|location=Sequence derived from alignment at P-littoralis_Contig123:485987..486476+ (Pylaiella littoralis U1_48)
TACACAAACGGGAAGAAGCTCTGGACCAAGTTCGACGCCGCGATGCTTAA
AATGAAGAAGTTTTGCAACCCTATCTGGGACAGGTAGGTCGTCTTTTTTT
GCTTGCAACATATTGAATCCATCCTCCGCCCCCTTGAGCACGTACATATT
CCTCGAATGTGTACTCCGGCTAGACCGAGTACAACGTTACCGCTTGAGCA
CATACAGTTGCGACATCAGGTGGCAAGATAAAAAAAATCAGTATGCATTT
CGATAGTTATCTTACTGCTGCACATTATGTTTGGGTCATCTCCACCAGAT
ACGTCAAGGGCCAGCCGGGGGGCAACCTGCCGTCGGGCCAAACTGGAGAC
GACGCCGTCAATAACCTTCTCGACGGTCTCTACTCGAAAACCAAAGGCTC
CGCGGAAAGCCCTGTGCAGGAGGACGATCTCGTGGAGTCCACTCCTGCAG
CCGACGGAGGGAAAGCCCCGGAGGAAAAGGCAGACGGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig123:485987..486476+

>mRNA_P-littoralis_Contig123.105.1 ID=mRNA_P-littoralis_Contig123.105.1|Name=mRNA_P-littoralis_Contig123.105.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig123:485987..486476+ (Pylaiella littoralis U1_48)
TACACAAACGGGAAGAAGCTCTGGACCAAGTTCGACGCCGCGATGCTTAA
AATGAAGAAGTTTTGCAACCCTATCTGGGACAGATACGTCAAGGGCCAGC
CGGGGGGCAACCTGCCGTCGGGCCAAACTGGAGACGACGCCGTCAATAAC
CTTCTCGACGGTCTCTACTCGAAAACCAAAGGCTCCGCGGAAAGCCCTGT
GCAGGAGGACGATCTCGTGGAGTCCACTCCTGCAGCCGACGGAGGGAAAG
CCCCGGAGGAAAAGGCAGACGGG
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