mRNA_P-littoralis_Contig123.1.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig123.1.2
Unique NamemRNA_P-littoralis_Contig123.1.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig123.1.2 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.280e-5
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 3 
Query:  162 RGWSEKQKLMACYVEGIFLDIYQVPQTLGTGSNLVCTVVW 281
            RG++E+QK+    V GI + ++ +PQ LGTGSN+VCT ++
Sbjct:  429 RGYAERQKIYGALVSGIMMQVFMIPQILGTGSNMVCTTLF 468
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig123.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJG9_9PHAE2.280e-547.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig123contigP-littoralis_Contig123:2799..3755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size310
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size120
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789532.5195909-UTR-P-littoralis_Contig123:2798..29611680789532.5195909-UTR-P-littoralis_Contig123:2798..2961Pylaiella littoralis U1_48UTRP-littoralis_Contig123 2799..2961 +
1680789532.533774-UTR-P-littoralis_Contig123:3451..34761680789532.533774-UTR-P-littoralis_Contig123:3451..3476Pylaiella littoralis U1_48UTRP-littoralis_Contig123 3452..3476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789532.548295-CDS-P-littoralis_Contig123:3476..35401680789532.548295-CDS-P-littoralis_Contig123:3476..3540Pylaiella littoralis U1_48CDSP-littoralis_Contig123 3477..3540 +
1680789532.558233-CDS-P-littoralis_Contig123:3699..37551680789532.558233-CDS-P-littoralis_Contig123:3699..3755Pylaiella littoralis U1_48CDSP-littoralis_Contig123 3700..3755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig123.1.2prot_P-littoralis_Contig123.1.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig123 3477..3755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig123.1.2

>prot_P-littoralis_Contig123.1.2 ID=prot_P-littoralis_Contig123.1.2|Name=mRNA_P-littoralis_Contig123.1.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=40bp
MACYVEGIFLDIYQVPQTLGTGSNLVCTVVWLALARLFDM
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mRNA from alignment at P-littoralis_Contig123:2799..3755+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig123.1.2 ID=mRNA_P-littoralis_Contig123.1.2|Name=mRNA_P-littoralis_Contig123.1.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=957bp|location=Sequence derived from alignment at P-littoralis_Contig123:2799..3755+ (Pylaiella littoralis U1_48)
GGAAGAATGCCAGTTTCTGAAGCTCACACAAGGGAGAGACTTTATGCTCT
GCAATGTTTGTACGCTAGCGAACCAAACCCTTCATGGAACACCCGGGGGA
GAGGCTACGACTGACTCCTCGATCAGAGAGTCGACAGAAGCGGCTCTCGC
TACACATCTAAAGGTAAATAGTCACCCGTTCAACCCAGGCAAAAAAAGAT
AATTAAAGACAACAAATACTAAATTGTCACGTCGAGTTCATGCGTCATCG
TCCTCTGATAATAACCTCCGGCGCAACCTGCGTGAAGAAACGTGTGCTTT
GTCCGATGACAAACCGTTCTGTCCCCTGCAACACTGCAGACCGTCAATCT
TGATCGCCAGGTACTGATGGACATCAAGTATCGTGCCCTTCGCGCGGTTT
CCGGAAGAAAACATTTGCGTTGCGTTTCGATGATGGTCGATGCAGCAAAC
CAGGATAAATGGGACGTGCCCCATCTCTTTCCCGAGACGCACGGAAGTGA
CAGGTAGGATAGATGGTACTTTAGTGGCATAGATCACAAACTCCTTACGA
CTGGTCATGCGGGTGGGATAGACACGACCAGAGGTGCCTTGATAACCCGC
GTTCAACAACTCATGGAATGATCCCCACCCTGCCCAACCCTATTTCGTAC
CAGGGGTTGGAGTGAAAAGCAAAAGCTCATGGCCTGTTACGTGGAAGGTA
TTTTTCTCGACATCTATCAAGTTCCCCAGACCCTTGGGACAGGTATGAAA
GTCGGTGATTTCTCCTCTGTAGTTTTCAACTAACGAACTGCGTACAGTAG
ACTGTACAGGTAATTTCTGCCAAGTCCTGACATGAGATTGCAAGAAATCC
TTATCTACTCTCTAATTTCACTGTTTCCTGCTCTGTTTGCTTCCTTGTCA
GGGAGTAACCTTGTCTGCACTGTGGTGTGGCTTGCGTTGGCTCGACTGTT
TGACATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig123:2799..3755+

>mRNA_P-littoralis_Contig123.1.2 ID=mRNA_P-littoralis_Contig123.1.2|Name=mRNA_P-littoralis_Contig123.1.2|organism=Pylaiella littoralis U1_48|type=CDS|length=120bp|location=Sequence derived from alignment at P-littoralis_Contig123:2799..3755+ (Pylaiella littoralis U1_48)
ATGGCCTGTTACGTGGAAGGTATTTTTCTCGACATCTATCAAGTTCCCCA
GACCCTTGGGACAGGGAGTAACCTTGTCTGCACTGTGGTGTGGCTTGCGT
TGGCTCGACTGTTTGACATG
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