mRNA_P-littoralis_Contig123.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig123.1.1
Unique NamemRNA_P-littoralis_Contig123.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig123.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig123contigP-littoralis_Contig123:2800..3160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size186
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789532.3946002-CDS-P-littoralis_Contig123:2799..29611680789532.3946002-CDS-P-littoralis_Contig123:2799..2961Pylaiella littoralis U1_48CDSP-littoralis_Contig123 2800..2961 +
1680789532.4067092-CDS-P-littoralis_Contig123:3137..31581680789532.4067092-CDS-P-littoralis_Contig123:3137..3158Pylaiella littoralis U1_48CDSP-littoralis_Contig123 3138..3158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig123.1.1prot_P-littoralis_Contig123.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig123 2800..3158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig123.1.1

>prot_P-littoralis_Contig123.1.1 ID=prot_P-littoralis_Contig123.1.1|Name=mRNA_P-littoralis_Contig123.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
EECQFLKLTQGRDFMLCNVCTLANQTLHGTPGGEATTDSSIRESTEAALA
THLKTVNLDRQ
back to top

mRNA from alignment at P-littoralis_Contig123:2800..3160+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig123.1.1 ID=mRNA_P-littoralis_Contig123.1.1|Name=mRNA_P-littoralis_Contig123.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=361bp|location=Sequence derived from alignment at P-littoralis_Contig123:2800..3160+ (Pylaiella littoralis U1_48)
GAAGAATGCCAGTTTCTGAAGCTCACACAAGGGAGAGACTTTATGCTCTG
CAATGTTTGTACGCTAGCGAACCAAACCCTTCATGGAACACCCGGGGGAG
AGGCTACGACTGACTCCTCGATCAGAGAGTCGACAGAAGCGGCTCTCGCT
ACACATCTAAAGGTAAATAGTCACCCGTTCAACCCAGGCAAAAAAAGATA
ATTAAAGACAACAAATACTAAATTGTCACGTCGAGTTCATGCGTCATCGT
CCTCTGATAATAACCTCCGGCGCAACCTGCGTGAAGAAACGTGTGCTTTG
TCCGATGACAAACCGTTCTGTCCCCTGCAACACTGCAGACCGTCAATCTT
GATCGCCAGGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig123:2800..3160+

>mRNA_P-littoralis_Contig123.1.1 ID=mRNA_P-littoralis_Contig123.1.1|Name=mRNA_P-littoralis_Contig123.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig123:2800..3160+ (Pylaiella littoralis U1_48)
GAAGAATGCCAGTTTCTGAAGCTCACACAAGGGAGAGACTTTATGCTCTG
CAATGTTTGTACGCTAGCGAACCAAACCCTTCATGGAACACCCGGGGGAG
AGGCTACGACTGACTCCTCGATCAGAGAGTCGACAGAAGCGGCTCTCGCT
ACACATCTAAAGACCGTCAATCTTGATCGCCAG
back to top