mRNA_P-littoralis_Contig1229.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1229.6.1
Unique NamemRNA_P-littoralis_Contig1229.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1229.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1229contigP-littoralis_Contig1229:15554..16026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size473
Hectar predicted targeting categorymitochondrion
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.846186-UTR-P-littoralis_Contig1229:15553..155781680789531.846186-UTR-P-littoralis_Contig1229:15553..15578Pylaiella littoralis U1_48UTRP-littoralis_Contig1229 15554..15578 -
1680789531.8631375-UTR-P-littoralis_Contig1229:15905..160261680789531.8631375-UTR-P-littoralis_Contig1229:15905..16026Pylaiella littoralis U1_48UTRP-littoralis_Contig1229 15906..16026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.8550053-CDS-P-littoralis_Contig1229:15578..159051680789531.8550053-CDS-P-littoralis_Contig1229:15578..15905Pylaiella littoralis U1_48CDSP-littoralis_Contig1229 15579..15905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1229.6.1prot_P-littoralis_Contig1229.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1229 15579..15905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1229.6.1

>prot_P-littoralis_Contig1229.6.1 ID=prot_P-littoralis_Contig1229.6.1|Name=mRNA_P-littoralis_Contig1229.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
MMTSIAHVGRHIAPNMIRRRSRYRLNGLPEALRIRLSRNVIHWVSFRAPF
VCSSCLAFSPDTRLLSPSTREPASIFCGTSRSPQKWETFPGIEAYSMKRV
RCLTASCD*
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mRNA from alignment at P-littoralis_Contig1229:15554..16026-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1229.6.1 ID=mRNA_P-littoralis_Contig1229.6.1|Name=mRNA_P-littoralis_Contig1229.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=473bp|location=Sequence derived from alignment at P-littoralis_Contig1229:15554..16026- (Pylaiella littoralis U1_48)
CTGGAATGCTTGCCCTTCATCCCAACAGCATTGTGAGTAACGCTGAAAGA
TCGCCGGTTTGTCGTTTCGAGTCTCTTTCTTCGTAGAACACCTGGAAATT
ATCACGGGTGTGGAAATCTATATGATGACCAGCATCGCACATGTGGGCAG
GCATATCGCCCCAAATATGATTCGCCGTCGCTCACGGTATCGATTGAATG
GACTTCCAGAAGCATTGCGTATCAGACTGTCCCGAAACGTCATCCATTGG
GTGTCGTTCCGAGCCCCCTTTGTTTGTTCTTCGTGTTTGGCATTTTCCCC
GGACACACGGCTTCTTTCGCCTAGCACGCGTGAGCCCGCAAGCATCTTCT
GTGGAACCTCGCGTTCTCCACAGAAGTGGGAGACTTTTCCCGGCATTGAG
GCGTATTCGATGAAGCGTGTCCGCTGTTTGACTGCATCATGCGATTGAAC
ACCGTACTTTGCGTATGCTGACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1229:15554..16026-

>mRNA_P-littoralis_Contig1229.6.1 ID=mRNA_P-littoralis_Contig1229.6.1|Name=mRNA_P-littoralis_Contig1229.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig1229:15554..16026- (Pylaiella littoralis U1_48)
ATGATGACCAGCATCGCACATGTGGGCAGGCATATCGCCCCAAATATGAT
TCGCCGTCGCTCACGGTATCGATTGAATGGACTTCCAGAAGCATTGCGTA
TCAGACTGTCCCGAAACGTCATCCATTGGGTGTCGTTCCGAGCCCCCTTT
GTTTGTTCTTCGTGTTTGGCATTTTCCCCGGACACACGGCTTCTTTCGCC
TAGCACGCGTGAGCCCGCAAGCATCTTCTGTGGAACCTCGCGTTCTCCAC
AGAAGTGGGAGACTTTTCCCGGCATTGAGGCGTATTCGATGAAGCGTGTC
CGCTGTTTGACTGCATCATGCGATTGA
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