mRNA_P-littoralis_Contig1229.17.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1229.17.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE) HSP 1 Score: 125 bits (313), Expect = 5.610e-31 Identity = 77/139 (55.40%), Postives = 101/139 (72.66%), Query Frame = 1
Query: 28 GAGSKGNLDSTAIRTFAGAGEALSRAQVKKESAAMAKNVASEAYRQKRLAQSSQLAQAVVSLSESVAAKRVLDEEAAVRAREVAARARKDQAIRDLQGRMALEEANSPLLLELRAALRLTYDEPVSAFMDATALPAATP 444
G GS GNL STAIRTFAGAGE SRAQV+K+ A + A+EA+RQKRLAQ Q+ +AV +L++SVAA+RVLDEEAAVRARE AA +RK + + +++G + E +S ELRAA++ Y +P+S FM+A A TP
Sbjct: 328 GVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTLADSVAARRVLDEEAAVRARETAAESRKQRKVNNMRGLLEFSEVDSAQYYELRAAIKAVYHQPLSDFMEAIPPAATTP 466
BLAST of mRNA_P-littoralis_Contig1229.17.1 vs. uniprot
Match: A0A6H5K3M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M7_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 6.950e-11 Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = 1
Query: 16 SYSSGAGSKGNLDSTAIRTFAGAGEALSRAQVKKESAAMAKNVASEAYRQKRLAQSSQLAQAVVSLSESVAAKRVLDEEAAVRAREVAARARKDQAIRDLQGRMALEEANSPLLLELRAALRLTYDEPVSAFM 414
S +SGA + +L S+AIR FAGAGE SRAQVKKE AA+A A E + + A + +L AV +LS +V +++ LDEEAA RAR AR K I DL+G++ P + LRA++ YD + FM
Sbjct: 53 SETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQAPRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRARWDYARLAKQAKIDDLRGKLEFT-LEGPKAMALRASISALYDMDDADFM 184
BLAST of mRNA_P-littoralis_Contig1229.17.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 1.360e-9 Identity = 56/121 (46.28%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 16 SYSSGAGSKGNLDSTAIRTFAGAGEALSRAQVKKESAAMAKNVASEAYRQKRLAQSSQLAQAVVSLSESVAAKRVLDEEAAVRAREVAARARKDQAIRDLQGRMALEEANSPLLLELRAAL 378
S +SGA + +L S+AIR FAGAGE SRAQVKKE AA+A A E R+ + A + L AV +LS +V +++ LDEEAA RAR AR K I DL+G++ P + LRA++
Sbjct: 53 SETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQARRVQQAHTVFLVTAVGALSAAVVSRQALDEEAAHRARWDYARLAKKAKIDDLRGKLEFT-LEGPTAMALRASI 172
BLAST of mRNA_P-littoralis_Contig1229.17.1 vs. uniprot
Match: A0A6H5JGS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS6_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 9.130e-6 Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query: 1 TEDIISYSSGAGSKGNLDSTAIRTFAGAGEALSRAQVKKESAAMAKNVASEAYRQKRLAQSSQLAQAVVSLSESVAAKRVLDEEAAVRAR 270
T+ S +SGA ++ +L S+AIR FAGAG+ SRAQVKKE AA+A A E R+ + A + + AV +LS +V +++ LDE+AA RAR
Sbjct: 231 TDGSGSRTSGAHTEVDLSSSAIRMFAGAGKIQSRAQVKKEYAAVAAANAQEQVRRVQQAHTGKQVTAVEALSAAVVSRQALDEDAAHRAR 320
BLAST of mRNA_P-littoralis_Contig1229.17.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE) HSP 1 Score: 53.5 bits (127), Expect = 1.420e-5 Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 1
Query: 16 SYSSGAGSKGNLDSTAIRTFAGAGEALSRAQVKKESAAMAKNVASEAYRQKRLAQSS---QLAQAVVSLSESVAAKRVLDEEAAVRAR 270
S +SGA ++ +L S+AIR FAG GE SRAQVKKE AA+A A E Q R Q + +L AV +LS +V +++ LDEEAA RAR
Sbjct: 179 SETSGAYTEVDLSSSAIRMFAGGGEIQSRAQVKKEHAAVAAANAQEQAEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRAR 266 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1229.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1229.17.1 >prot_P-littoralis_Contig1229.17.1 ID=prot_P-littoralis_Contig1229.17.1|Name=mRNA_P-littoralis_Contig1229.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=148bp TEDIISYSSGAGSKGNLDSTAIRTFAGAGEALSRAQVKKESAAMAKNVASback to top mRNA from alignment at P-littoralis_Contig1229:46694..47139+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1229.17.1 ID=mRNA_P-littoralis_Contig1229.17.1|Name=mRNA_P-littoralis_Contig1229.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=446bp|location=Sequence derived from alignment at P-littoralis_Contig1229:46694..47139+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1229:46694..47139+ >mRNA_P-littoralis_Contig1229.17.1 ID=mRNA_P-littoralis_Contig1229.17.1|Name=mRNA_P-littoralis_Contig1229.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=444bp|location=Sequence derived from alignment at P-littoralis_Contig1229:46694..47139+ (Pylaiella littoralis U1_48)back to top |