mRNA_P-littoralis_Contig1229.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1229.17.1
Unique NamemRNA_P-littoralis_Contig1229.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1229.17.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 5.610e-31
Identity = 77/139 (55.40%), Postives = 101/139 (72.66%), Query Frame = 1
Query:   28 GAGSKGNLDSTAIRTFAGAGEALSRAQVKKESAAMAKNVASEAYRQKRLAQSSQLAQAVVSLSESVAAKRVLDEEAAVRAREVAARARKDQAIRDLQGRMALEEANSPLLLELRAALRLTYDEPVSAFMDATALPAATP 444
            G GS GNL STAIRTFAGAGE  SRAQV+K+ A +    A+EA+RQKRLAQ  Q+ +AV +L++SVAA+RVLDEEAAVRARE AA +RK + + +++G +   E +S    ELRAA++  Y +P+S FM+A    A TP
Sbjct:  328 GVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTLADSVAARRVLDEEAAVRARETAAESRKQRKVNNMRGLLEFSEVDSAQYYELRAAIKAVYHQPLSDFMEAIPPAATTP 466          
BLAST of mRNA_P-littoralis_Contig1229.17.1 vs. uniprot
Match: A0A6H5K3M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.950e-11
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = 1
Query:   16 SYSSGAGSKGNLDSTAIRTFAGAGEALSRAQVKKESAAMAKNVASEAYRQKRLAQSSQLAQAVVSLSESVAAKRVLDEEAAVRAREVAARARKDQAIRDLQGRMALEEANSPLLLELRAALRLTYDEPVSAFM 414
            S +SGA +  +L S+AIR FAGAGE  SRAQVKKE AA+A   A E   + + A + +L  AV +LS +V +++ LDEEAA RAR   AR  K   I DL+G++       P  + LRA++   YD   + FM
Sbjct:   53 SETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQAPRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRARWDYARLAKQAKIDDLRGKLEFT-LEGPKAMALRASISALYDMDDADFM 184          
BLAST of mRNA_P-littoralis_Contig1229.17.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.360e-9
Identity = 56/121 (46.28%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   16 SYSSGAGSKGNLDSTAIRTFAGAGEALSRAQVKKESAAMAKNVASEAYRQKRLAQSSQLAQAVVSLSESVAAKRVLDEEAAVRAREVAARARKDQAIRDLQGRMALEEANSPLLLELRAAL 378
            S +SGA +  +L S+AIR FAGAGE  SRAQVKKE AA+A   A E  R+ + A +  L  AV +LS +V +++ LDEEAA RAR   AR  K   I DL+G++       P  + LRA++
Sbjct:   53 SETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQARRVQQAHTVFLVTAVGALSAAVVSRQALDEEAAHRARWDYARLAKKAKIDDLRGKLEFT-LEGPTAMALRASI 172          
BLAST of mRNA_P-littoralis_Contig1229.17.1 vs. uniprot
Match: A0A6H5JGS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS6_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 9.130e-6
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 TEDIISYSSGAGSKGNLDSTAIRTFAGAGEALSRAQVKKESAAMAKNVASEAYRQKRLAQSSQLAQAVVSLSESVAAKRVLDEEAAVRAR 270
            T+   S +SGA ++ +L S+AIR FAGAG+  SRAQVKKE AA+A   A E  R+ + A + +   AV +LS +V +++ LDE+AA RAR
Sbjct:  231 TDGSGSRTSGAHTEVDLSSSAIRMFAGAGKIQSRAQVKKEYAAVAAANAQEQVRRVQQAHTGKQVTAVEALSAAVVSRQALDEDAAHRAR 320          
BLAST of mRNA_P-littoralis_Contig1229.17.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.420e-5
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   16 SYSSGAGSKGNLDSTAIRTFAGAGEALSRAQVKKESAAMAKNVASEAYRQKRLAQSS---QLAQAVVSLSESVAAKRVLDEEAAVRAR 270
            S +SGA ++ +L S+AIR FAG GE  SRAQVKKE AA+A   A E   Q R  Q +   +L  AV +LS +V +++ LDEEAA RAR
Sbjct:  179 SETSGAYTEVDLSSSAIRMFAGGGEIQSRAQVKKEHAAVAAANAQEQAEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRAR 266          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1229.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE5.610e-3155.40Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3M7_9PHAE6.950e-1144.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU95_9PHAE1.360e-946.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGS6_9PHAE9.130e-647.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXV2_9PHAE1.420e-551.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1229contigP-littoralis_Contig1229:46694..47139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size447
Hectar predicted targeting categoryother localisation
Exons1
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789532.3217673-CDS-P-littoralis_Contig1229:46693..471371680789532.3217673-CDS-P-littoralis_Contig1229:46693..47137Pylaiella littoralis U1_48CDSP-littoralis_Contig1229 46694..47137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1229.17.1prot_P-littoralis_Contig1229.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1229 46694..47137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1229.17.1

>prot_P-littoralis_Contig1229.17.1 ID=prot_P-littoralis_Contig1229.17.1|Name=mRNA_P-littoralis_Contig1229.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=148bp
TEDIISYSSGAGSKGNLDSTAIRTFAGAGEALSRAQVKKESAAMAKNVAS
EAYRQKRLAQSSQLAQAVVSLSESVAAKRVLDEEAAVRAREVAARARKDQ
AIRDLQGRMALEEANSPLLLELRAALRLTYDEPVSAFMDATALPAATP
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mRNA from alignment at P-littoralis_Contig1229:46694..47139+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1229.17.1 ID=mRNA_P-littoralis_Contig1229.17.1|Name=mRNA_P-littoralis_Contig1229.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=446bp|location=Sequence derived from alignment at P-littoralis_Contig1229:46694..47139+ (Pylaiella littoralis U1_48)
acCGAGGACATCATTAGCTACTCGAGCGGCGCAGGGTCCAAGGGTAACCT CGACTCGACGGCCATTCGGACGTTTGCCGGGGCGGGCGAGGCTCTAAGTC GAGCTCAAGTCAAGAAAGAGAGCGCGGCGATGGCAAAAAACGTTGCCTCG GAGGCCTATCGCCAGAAGAGACTGGCGCAAAGCTCTCAATTGGCGCAGGC CGTGGTGTCGCTGTCGGAGTCTGTTGCCGCAAAGCGGGTACTTGATGAAG AGGCCGCCGTCCGGGCACGCGAGGTAGCGGCCCGTGCCCGTAAGGACCAG GCGATAAGGGATCTACAGGGGCGAATGGCGTTGGAGGAAGCTAATTCCCC ACTTTTGCTCGAGTTGCGTGCCGCACTCCGACTAACGTATGATGAACCCG TAAGTGCCTTCATGGACGCCACCGCTTTGCCTGCGGCGACACCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1229:46694..47139+

>mRNA_P-littoralis_Contig1229.17.1 ID=mRNA_P-littoralis_Contig1229.17.1|Name=mRNA_P-littoralis_Contig1229.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=444bp|location=Sequence derived from alignment at P-littoralis_Contig1229:46694..47139+ (Pylaiella littoralis U1_48)
acCGAGGACATCATTAGCTACTCGAGCGGCGCAGGGTCCAAGGGTAACCT
CGACTCGACGGCCATTCGGACGTTTGCCGGGGCGGGCGAGGCTCTAAGTC
GAGCTCAAGTCAAGAAAGAGAGCGCGGCGATGGCAAAAAACGTTGCCTCG
GAGGCCTATCGCCAGAAGAGACTGGCGCAAAGCTCTCAATTGGCGCAGGC
CGTGGTGTCGCTGTCGGAGTCTGTTGCCGCAAAGCGGGTACTTGATGAAG
AGGCCGCCGTCCGGGCACGCGAGGTAGCGGCCCGTGCCCGTAAGGACCAG
GCGATAAGGGATCTACAGGGGCGAATGGCGTTGGAGGAAGCTAATTCCCC
ACTTTTGCTCGAGTTGCGTGCCGCACTCCGACTAACGTATGATGAACCCG
TAAGTGCCTTCATGGACGCCACCGCTTTGCCTGCGGCGACACCC
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