mRNA_P-littoralis_Contig1229.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1229.15.1
Unique NamemRNA_P-littoralis_Contig1229.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1229.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1229contigP-littoralis_Contig1229:44933..46152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size524
Hectar predicted targeting categoryother localisation
Exons2
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789532.2618752-UTR-P-littoralis_Contig1229:44932..449821680789532.2618752-UTR-P-littoralis_Contig1229:44932..44982Pylaiella littoralis U1_48UTRP-littoralis_Contig1229 44933..44982 +
1680789532.2910004-UTR-P-littoralis_Contig1229:45891..461521680789532.2910004-UTR-P-littoralis_Contig1229:45891..46152Pylaiella littoralis U1_48UTRP-littoralis_Contig1229 45892..46152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789532.2727587-CDS-P-littoralis_Contig1229:44982..450071680789532.2727587-CDS-P-littoralis_Contig1229:44982..45007Pylaiella littoralis U1_48CDSP-littoralis_Contig1229 44983..45007 +
1680789532.2815824-CDS-P-littoralis_Contig1229:45703..458911680789532.2815824-CDS-P-littoralis_Contig1229:45703..45891Pylaiella littoralis U1_48CDSP-littoralis_Contig1229 45704..45891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1229.15.1prot_P-littoralis_Contig1229.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1229 44983..45891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1229.15.1

>prot_P-littoralis_Contig1229.15.1 ID=prot_P-littoralis_Contig1229.15.1|Name=mRNA_P-littoralis_Contig1229.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
MGCSTLTGAPILFKDGAKLWSHFDTAMRVMKRDFNPIWDIRWTHARFHYF
TLEHQFWFALHGVDFTHSSV*
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mRNA from alignment at P-littoralis_Contig1229:44933..46152+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1229.15.1 ID=mRNA_P-littoralis_Contig1229.15.1|Name=mRNA_P-littoralis_Contig1229.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1220bp|location=Sequence derived from alignment at P-littoralis_Contig1229:44933..46152+ (Pylaiella littoralis U1_48)
GGGCACGGGACAACGATATTGTGCTTCCTGCGTGGCTGACTGTGGAGAAG
ATGGGGTGCAGTACCCTGACCGGAGGTGAGAATGATGAGCCAGCGAGTAC
GTGCTGAAGACGAGGGGAGACGAGGGGAGACGAGGGGGAAAGAAAGAGAG
ACGTGTGTGGGCGACCCGCCTCGCAAATCCGGTCTGCCTACTGTCGCACT
GCTGTGATTCTTTTGTTGTACACGTTATGCGCGAGTGCGAAAGGCACGCT
TGTTGATTTAAATCCTCTTGACACATGAGGCACATGAGGTTTTATCATTT
TTTTCACGTGCGGCGTAAAAGCAGCAGCAGCAGTACTGTAAGTACATGAG
GGGCTTGCTATGCTGCACGGCAGTACGGTAGCTATTTCGCTTGTACCACA
GCATATACGCACTCTGTAGCTCTACTGTCTTCAAAACAGAACTAGCTCTT
TCGCCTGTACAGCAGTATAGTTTTGCTGTCCTAAATAACAGGTAACATCA
GTAACTGCTGCACGAGCGCGTACGTAGCTCTTGTGGAAGTGCAACCCATA
TGGCGATCTCTCTCGAGGGACCTGCCGGCGCGCACCGTGGACACACCACA
AGGTATCTAAAGCATACGTGCAGATTGCAGATGTTACTGGATTTCATCCC
GATGTGCAGATTCGCTCGCTGCAGCTCGTACTGCTGCTGCTGTCAATCGC
AGCATCGAAATAGTATCGCGGCTTACGACTCTATGTACACTGCCCTGTTG
TCTCTGTCTGCTGCGTCGCAGCCCCGATTCTCTTCAAGGACGGTGCCAAG
CTGTGGAGTCATTTCGACACGGCGATGCGTGTGATGAAGCGGGACTTTAA
CCCAATCTGGGACATACGTTGGACGCATGCGCGTTTTCATTATTTTACCC
TCGAACACCAATTTTGGTTCGCGTTGCACGGCGTTGACTTCACGCATAGC
TCCGTGTAAAGAATTTTCGTGTGTATGCCCCGGCGGTGAGGCATCAGATT
CGTCGCGACAATTGCCATGAAATCGCGCTCTACTGCGTGTGGGCGCCATC
TTACAATATTGGCTGTGAAATTGGAACGAAACCCATGCTAGACTAATCGA
CGGGTGAAACACAGCAGTTGTATCTTCATTTGGCTCAGTGTCTGTTACCC
TGGAGAATAGCGTAACAAAAAGGGATTCGGCACGACACTTTGAAACGGCC
CCGACCTAATGCCACACATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1229:44933..46152+

>mRNA_P-littoralis_Contig1229.15.1 ID=mRNA_P-littoralis_Contig1229.15.1|Name=mRNA_P-littoralis_Contig1229.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig1229:44933..46152+ (Pylaiella littoralis U1_48)
ATGGGGTGCAGTACCCTGACCGGAGCCCCGATTCTCTTCAAGGACGGTGC
CAAGCTGTGGAGTCATTTCGACACGGCGATGCGTGTGATGAAGCGGGACT
TTAACCCAATCTGGGACATACGTTGGACGCATGCGCGTTTTCATTATTTT
ACCCTCGAACACCAATTTTGGTTCGCGTTGCACGGCGTTGACTTCACGCA
TAGCTCCGTGTAA
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