mRNA_P-littoralis_Contig1229.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1229.14.1
Unique NamemRNA_P-littoralis_Contig1229.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1229.14.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 8.500e-9
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:  733 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNA 900
            +N+DE LPLPL Y++YVKT+  L L + +  T KQ ++ +Q+VCIVY+CLAVKRNA
Sbjct:    3 INVDEVLPLPLVYNDYVKTSINLALENKKLFTLKQQMLFIQNVCIVYSCLAVKRNA 58
[Close]
BLAST of mRNA_P-littoralis_Contig1229.14.1 vs. uniprot
Match: A0A6H5KDP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 6.010e-8
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:  733 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNA 900
            M LD   PLPLE++ YV+   +L LL  + ++Q +LL H+Q+VCIVYACLAVKRNA
Sbjct:    4 MKLDNVQPLPLEFNGYVEGTLEL-LLGGKGLSQIKLLKHLQNVCIVYACLAVKRNA 58
[Close]
BLAST of mRNA_P-littoralis_Contig1229.14.1 vs. uniprot
Match: A0A6H5JUY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY9_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.240e-7
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:  733 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNA 900
            M LD   PLPLE++ YV+   +L LL  + ++Q +LL H+Q+VCIVYACLAVKRNA
Sbjct:    4 MKLDNVQPLPLEFNGYVEGTLEL-LLGGKGLSQIKLLKHLQNVCIVYACLAVKRNA 58
[Close]
BLAST of mRNA_P-littoralis_Contig1229.14.1 vs. uniprot
Match: A0A6H5JZP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.420e-7
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:  733 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNA 900
            M LD   PLPLE++ YV+   +L LL  + ++Q +LL H+Q+VCIVYACLAVKRNA
Sbjct:    4 MKLDNVQPLPLEFNGYVEGTLEL-LLGGKGLSQIKLLKHLQNVCIVYACLAVKRNA 58
[Close]
BLAST of mRNA_P-littoralis_Contig1229.14.1 vs. uniprot
Match: A0A6H5JZ15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ15_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.270e-6
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  733 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNA 900
            M LD    LPLE++ Y +T   ++   +  +T  +LL H+Q+VCIVYACLAVKRNA
Sbjct:    4 MKLDGVQSLPLEFNSYAETVISMLRDRSSGLTDAKLLKHLQNVCIVYACLAVKRNA 59
[Close]
BLAST of mRNA_P-littoralis_Contig1229.14.1 vs. uniprot
Match: A0A6H5JXZ8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ8_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.380e-6
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  733 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNA 900
            M LD    LPLE++ Y +T   ++   +  +T  +LL H+Q+VCIVYACLAVKRNA
Sbjct:    4 MKLDGVQSLPLEFNSYAETVISMLRDRSSGLTDAKLLKHLQNVCIVYACLAVKRNA 59
[Close]
BLAST of mRNA_P-littoralis_Contig1229.14.1 vs. uniprot
Match: A0A6H5KFD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD8_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 6.070e-6
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:  733 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNA 900
            M LD    LPLE++ + +TA  ++   +  +T  +LL H+Q+ CIVY CLAVKRNA
Sbjct:    4 MKLDGVQSLPLEFNSHAETAISMLRDRSSGLTDAKLLKHLQNACIVYTCLAVKRNA 59
[Close]
BLAST of mRNA_P-littoralis_Contig1229.14.1 vs. uniprot
Match: A0A6H5K889_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K889_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.390e-5
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:  733 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNA 900
            M LD    L LE++ Y +T   ++   +  +T  +LL H+Q+VCIVYACLAVKRNA
Sbjct:    4 MKLDGVQSLSLEFNSYAETVISMLRDRSSGLTDAKLLKHLQNVCIVYACLAVKRNA 59
[Close]
BLAST of mRNA_P-littoralis_Contig1229.14.1 vs. uniprot
Match: A0A6H5JJR6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR6_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.170e-5
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:  727 STMNLDETLPLPLEYSEYVKTAAKLVLLDNED--ITQKQLLIHMQSVCIVYACLAVKRNA 900
            + M LD    LPLE++ Y +T   + L D     +T  +LL H+Q+VCIVYACLAVKRNA
Sbjct:    2 NAMKLDGVQSLPLEFNSYAETVISM-LRDKRSSGLTDTKLLKHLQNVCIVYACLAVKRNA 60
[Close]
BLAST of mRNA_P-littoralis_Contig1229.14.1 vs. uniprot
Match: A0A6H5JGS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS6_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 5.720e-5
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  733 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNA 900
            M +D    LPLE + YV+    L+L     +++ +LL H+QSVCIVYACLAVKRNA
Sbjct:    4 MKIDHVQRLPLELNGYVEGTLDLLLGGGNGLSKIKLLKHLQSVCIVYACLAVKRNA 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1229.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE8.500e-957.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDP2_9PHAE6.010e-857.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUY9_9PHAE2.240e-757.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZP4_9PHAE2.420e-757.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ15_9PHAE1.270e-650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXZ8_9PHAE1.380e-650.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFD8_9PHAE6.070e-646.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K889_9PHAE1.390e-548.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JJR6_9PHAE3.170e-550.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGS6_9PHAE5.720e-551.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1229contigP-littoralis_Contig1229:43954..44853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size902
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789532.2230575-UTR-P-littoralis_Contig1229:43953..446851680789532.2230575-UTR-P-littoralis_Contig1229:43953..44685Pylaiella littoralis U1_48UTRP-littoralis_Contig1229 43954..44685 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789532.2321568-CDS-P-littoralis_Contig1229:44685..448531680789532.2321568-CDS-P-littoralis_Contig1229:44685..44853Pylaiella littoralis U1_48CDSP-littoralis_Contig1229 44686..44853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1229.14.1prot_P-littoralis_Contig1229.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1229 44686..44853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1229.14.1

>prot_P-littoralis_Contig1229.14.1 ID=prot_P-littoralis_Contig1229.14.1|Name=mRNA_P-littoralis_Contig1229.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACL
AVKRNA
back to top

mRNA from alignment at P-littoralis_Contig1229:43954..44853+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1229.14.1 ID=mRNA_P-littoralis_Contig1229.14.1|Name=mRNA_P-littoralis_Contig1229.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=900bp|location=Sequence derived from alignment at P-littoralis_Contig1229:43954..44853+ (Pylaiella littoralis U1_48)
TGTGGCTTCATTCATTCGAAAGTGATCAACAAATACGTTACAGCAGCAGT
AGCAGCCTGTTGAAACGATGTCAACACCGTCTGTCTGTCAAAACAAAATG
AGTCCCCCACGGAAAAAATAAAATCAATCGCGGTTATAAGACGTGGTGCT
TTTCGAAGATTCTGTTGGAATTCTTCTTATTGAAAAAGGCGGATTTTATA
AGGAGATTTTTTTCAGCTGTAATAAGTAGTTTGACAAGACGAAGAAAAAA
GACTTCGTCCTTTATTTTTTTTCCTGGTTATCTCTCGGGCCTCAGCTACC
TGTAAAACCAGTTTCGGTACATACGTTTTCTCTTTTTCTTCCCAGTCAAC
CGGTGGAAAAGATTAAAAAAAAGTTGGCATTTTTATGTCTAGAAAACAAT
AAGAAGAAAAAAATATAAGAAAAAACAAATACTCTGACCACTTATTATAG
CTGAAAAAAATCTCCTTAGAAAAGCCCTTTTTCAGTAAGAAGAATTCCAA
CAGGATCTTCGGAAAGCACCGCTTCTTTATAGCTCGAAAAAAATACACAG
ATTAGAAAAAGCGTTTTCATCGTTTCCTGAGAGGCGTTCGGGCAAAATTC
AAATCTGTGAGCGCGCGCGGTTGCAGCACAGCACGCCGCGGGCACGCCGC
AGGACGCCGCACGCCACCACAGCGATTTTCCGCCTAGTACGTGCCGTGCC
TACACAAAGCAGAGCATCACATCACGAGCACCATGAATCTCGATGAGACG
CTGCCACTTCCGCTGGAGTACTCGGAGTACGTGAAGACCGCCGCGAAGCT
CGTCTTATTGGACAACGAGGACATAACACAGAAGCAGCTACTGATACACA
TGCAGAGCGTGTGTATAGTCTACGCGTGCCTGGCAGTGAAGCGGAACGCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1229:43954..44853+

>mRNA_P-littoralis_Contig1229.14.1 ID=mRNA_P-littoralis_Contig1229.14.1|Name=mRNA_P-littoralis_Contig1229.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig1229:43954..44853+ (Pylaiella littoralis U1_48)
ATGAATCTCGATGAGACGCTGCCACTTCCGCTGGAGTACTCGGAGTACGT
GAAGACCGCCGCGAAGCTCGTCTTATTGGACAACGAGGACATAACACAGA
AGCAGCTACTGATACACATGCAGAGCGTGTGTATAGTCTACGCGTGCCTG
GCAGTGAAGCGGAACGCC
back to top