mRNA_P-littoralis_Contig1229.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1229.12.1
Unique NamemRNA_P-littoralis_Contig1229.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1229.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1229contigP-littoralis_Contig1229:36820..37889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size261
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.8012748-CDS-P-littoralis_Contig1229:36821..369431680789531.8012748-CDS-P-littoralis_Contig1229:36821..36943Pylaiella littoralis U1_48CDSP-littoralis_Contig1229 36822..36943 -
1680789531.8144262-CDS-P-littoralis_Contig1229:37753..378891680789531.8144262-CDS-P-littoralis_Contig1229:37753..37889Pylaiella littoralis U1_48CDSP-littoralis_Contig1229 37754..37889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1229.12.1prot_P-littoralis_Contig1229.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1229 36822..37889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1229.12.1

>prot_P-littoralis_Contig1229.12.1 ID=prot_P-littoralis_Contig1229.12.1|Name=mRNA_P-littoralis_Contig1229.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
TLSQVASHAAIMCQTEVFRFQHPYSPSTIAASVQLRGLFPTGGAPWCGSC
FTNSPSRAPPANAALVSGRKGLFRADPQGRYFGDLP
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mRNA from alignment at P-littoralis_Contig1229:36820..37889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1229.12.1 ID=mRNA_P-littoralis_Contig1229.12.1|Name=mRNA_P-littoralis_Contig1229.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1070bp|location=Sequence derived from alignment at P-littoralis_Contig1229:36820..37889- (Pylaiella littoralis U1_48)
ACCCTCTCACAGGTAGCTTCTCACGCCGCCATCATGTGCCAGACGGAGGT
TTTTAGGTTCCAGCACCCGTATTCGCCCAGTACCATCGCTGCAAGTGTTC
AGCTTCGAGGTCTATTTCCGACGGGTGGAGCGCCATGTAAGTTTTGGTGT
GTAACGAGCCCCACAAATGATTCGTGCTTTGGAGGGAACTTCACTTCACT
ATTTTCTACCTGGTATTGATGTATATATACATGTATGATACGCCTATCGT
ACAATTCTGATTTTTTTCTCAGCCAGGGGGGACAACTCTCCAATAAGAAC
ACAACGCTCGTCGAGCTAACGTTAGGACACCTGTGTTACCGTTTAACAAA
TGTGCAGCCCCAGCCAAAATCCACACCTTCACTACCTCGTGCGTAGATCA
CCCCAATGAAGGGGCTTTAGGCCAAAATCCAACGCCCGTAAGGGCGATAT
GACGCTACCTGACGGAATGAGTAAAACAACATTCCGAGTGGCGGTATTTC
GTCGTCGGGAAACCCTCCCGCGAATTCTACACCTCCTGCGTTGTTTCACA
ACATCGGACTAGGGTCAAGCTCAACTGAGGGTCTTCTTTCCCCGCTGATT
TTTCCAAGCCGTAAACCTTTGCTGTGGTTTCGCCTTACAGTTGATAGAGA
CAGTGGGAATCTCTTTAATCCATTCGTGAGCGTCACTATAGTTATTAGAT
AACGAGGTAAATCATGTGATTACTCACGCCGGTTACCCGCACTCCGTTGA
ATTCCTCCCTCTTGACATTCAGGGCACTGGGCAGAAACCACATAACCTCC
CCACCGTCTCCGGCCATCGCAATGCCATGTATCGATGAAATAGTCGCATT
CCCATTGTCCGCCAATTGATCAATATGCCGTTAACATAACGCCCCCCCCC
CTTCCACACACACACACACCCACACGCTCTGTATGCAATTTAGCAGGGTG
TGGAAGTTGCTTTACAAATTCACCATCACGGGCACCGCCGGCAAATGCGG
CATTGGTCTCCGGAAGAAAAGGACTTTTCCGAGCTGACCCTCAAGGACGC
TACTTCGGCGACCTCCCCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1229:36820..37889-

>mRNA_P-littoralis_Contig1229.12.1 ID=mRNA_P-littoralis_Contig1229.12.1|Name=mRNA_P-littoralis_Contig1229.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig1229:36820..37889- (Pylaiella littoralis U1_48)
ACCCTCTCACAGGTAGCTTCTCACGCCGCCATCATGTGCCAGACGGAGGT
TTTTAGGTTCCAGCACCCGTATTCGCCCAGTACCATCGCTGCAAGTGTTC
AGCTTCGAGGTCTATTTCCGACGGGTGGAGCGCCATGGTGTGGAAGTTGC
TTTACAAATTCACCATCACGGGCACCGCCGGCAAATGCGGCATTGGTCTC
CGGAAGAAAAGGACTTTTCCGAGCTGACCCTCAAGGACGCTACTTCGGCG
ACCTCCCC
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