mRNA_P-littoralis_Contig1228.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1228.27.1
Unique NamemRNA_P-littoralis_Contig1228.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1228.27.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 9.040e-26
Identity = 56/129 (43.41%), Postives = 86/129 (66.67%), Query Frame = 3 
Query:  717 STRVDKVFTETIAENKLKCKREPGRGLVKIAPDKHYFVANATRLEETMEAGLSVEEGGTDNATLPEIAACLMMAAKARGEEPGWVVKDGCVWATPLSIALDGSYRNRNHASHAVNVIASVQLMEPDHRG 1103
            S  VD VF+  + +++   K+EPGRG++++  +KHYF  N TRL+E  +    ++EG   N T  +IA  L+ + + RGEEPG+ V+   V  TPL +A DGSYRNRNH +H++NV+ S++L E ++RG
Sbjct:  591 SVAVDVVFSREMKKHREGLKQEPGRGVIRVPIEKHYFAHNETRLKELAKEQGPIKEGHISNTTWTDIAVGLLRSMEDRGEEPGYKVEGDVVVVTPLEVAFDGSYRNRNHTAHSINVVCSLKLREQNNRG 719
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BLAST of mRNA_P-littoralis_Contig1228.27.1 vs. uniprot
Match: A0A6H5JU55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU55_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 9.560e-25
Identity = 60/127 (47.24%), Postives = 84/127 (66.14%), Query Frame = 3 
Query:  726 VDKVFTETIAENKLKCKREPGRGLVKIAPDKHYFVAN-ATRLEETMEAGLSVEEGGTDNATLPEIAACLMMAAKARGEEPGWVVKDGCVWATPLSIALDGSYRNRNHASHAVNVIASVQLMEPDHRG 1103
            VD+ + E   E +   K EPGR  V+I  +KH+F  +  + LEE  + G+ V++G  DN T PEIAA ++ A  A+ E PG+ ++ G V AT ++I+ DGSYRNRNH SH VNV+ASV+  +PDHRG
Sbjct:  645 VDESWEEMFKEVRKSIKNEPGRRTVEIPIEKHFFAHHMVSLLEELKQYGVGVKDGSIDNTTYPEIAAGIIAAKTAKREGPGFQLEGGKVVATLVNISFDGSYRNRNHTSHGVNVVASVKRTKPDHRG 771
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BLAST of mRNA_P-littoralis_Contig1228.27.1 vs. uniprot
Match: A0A6H5J8W1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W1_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 8.230e-16
Identity = 49/95 (51.58%), Postives = 62/95 (65.26%), Query Frame = 3 
Query:  105 EFAELQRDVQEQKKCRRCKKRLLRVTSWEYVRRESLASPYILYGPAVMAMSWSCCSCGALHLDESLPARGKLCRLWSETDAVVRVLGSECPILET 389
            E AE   DVQ+Q KCRRC++ + R+  WEYVR ESLASP++  G A        CSCGA+HL E LP R K   +WS  ++VV VLG +CP+ ET
Sbjct:  299 ETAEFLEDVQKQIKCRRCQESV-RIGDWEYVRLESLASPFLFPGVAPEVGLAFSCSCGAVHLGEPLPERRKQGVVWSSANSVVEVLGHQCPVRET 392
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BLAST of mRNA_P-littoralis_Contig1228.27.1 vs. uniprot
Match: A0A6H5JHR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR1_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.630e-15
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 3 
Query:  882 EGGTDNATLPEIAACLMMAAKARGEEPGWVVKDGCVWATPLSIALDGSYRNRNHASHAVNVIASVQLMEPDHRG 1103
            +G  DN T PEIAA ++ A  A+ E PG+ ++ G V AT ++I+ DGSYRNRNH SH VNV+ASV+ M+PDHRG
Sbjct:    2 DGSIDNTTYPEIAAGIIAAKTAKREGPGFQLEGGKVVATLVNISFDGSYRNRNHTSHGVNVVASVKRMKPDHRG 75
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1228.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L2W2_9PHAE9.040e-2643.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU55_9PHAE9.560e-2547.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8W1_9PHAE8.230e-1651.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JHR1_9PHAE1.630e-1556.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1228contigP-littoralis_Contig1228:49397..52136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1104
Hectar predicted targeting categoryother localisation
Exons5
Cds size1101
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1228.27.1prot_P-littoralis_Contig1228.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1228 49399..52136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.7121735-UTR-P-littoralis_Contig1228:49396..493981680789531.7121735-UTR-P-littoralis_Contig1228:49396..49398Pylaiella littoralis U1_48UTRP-littoralis_Contig1228 49397..49398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.7246354-CDS-P-littoralis_Contig1228:49398..494271680789531.7246354-CDS-P-littoralis_Contig1228:49398..49427Pylaiella littoralis U1_48CDSP-littoralis_Contig1228 49399..49427 +
1680789531.7326832-CDS-P-littoralis_Contig1228:49803..504981680789531.7326832-CDS-P-littoralis_Contig1228:49803..50498Pylaiella littoralis U1_48CDSP-littoralis_Contig1228 49804..50498 +
1680789531.7436857-CDS-P-littoralis_Contig1228:51071..512261680789531.7436857-CDS-P-littoralis_Contig1228:51071..51226Pylaiella littoralis U1_48CDSP-littoralis_Contig1228 51072..51226 +
1680789531.7540996-CDS-P-littoralis_Contig1228:51724..518501680789531.7540996-CDS-P-littoralis_Contig1228:51724..51850Pylaiella littoralis U1_48CDSP-littoralis_Contig1228 51725..51850 +
1680789531.7648218-CDS-P-littoralis_Contig1228:52040..521361680789531.7648218-CDS-P-littoralis_Contig1228:52040..52136Pylaiella littoralis U1_48CDSP-littoralis_Contig1228 52041..52136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1228.27.1

>prot_P-littoralis_Contig1228.27.1 ID=prot_P-littoralis_Contig1228.27.1|Name=mRNA_P-littoralis_Contig1228.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=367bp
MIAEPKGSYFWATRTVCKAPTTLPPGMDCLQLLKEFAELQRDVQEQKKCR
RCKKRLLRVTSWEYVRRESLASPYILYGPAVMAMSWSCCSCGALHLDESL
PARGKLCRLWSETDAVVRVLGSECPILETKENVPGRVRSLAVEPAGGKSK
VDEPTRDVQERRAPAGATAGNSTRETNSPDDADGGGGAPAGFSSGPTDGV
GEHRRTTGGAQRDPLAEMPTGLRPNSTTGSTAGSTSSGSTRVDKVFTETI
AENKLKCKREPGRGLVKIAPDKHYFVANATRLEETMEAGLSVEEGGTDNA
TLPEIAACLMMAAKARGEEPGWVVKDGCVWATPLSIALDGSYRNRNHASH
AVNVIASVQLMEPDHRG
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mRNA from alignment at P-littoralis_Contig1228:49397..52136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1228.27.1 ID=mRNA_P-littoralis_Contig1228.27.1|Name=mRNA_P-littoralis_Contig1228.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2740bp|location=Sequence derived from alignment at P-littoralis_Contig1228:49397..52136+ (Pylaiella littoralis U1_48)
TCATGATTGCCGAGCCGAAGGGATCCTATTTGTGAGTTACGGCGGCACCG
TGGGTTGCGGGGTGCGGACGCAGGGCGTTCACCTAACAGTATAACCAAGA
AACGCCCGACGAGCTTGTCCAACATGACGTTTGACATTGATTGCTGCCAC
GGCGAGTACAAGCGTGCATCGACAGTCATCGCCGACGATGGTTAACCCCA
TGTGTTTTGTGGGTGGTTGTTTACAAATGCACCACAAAGAAAGTGATAGT
GCTGAAAGTTGTGTCGGGTTACTGCACCCCCGTTGGTGTTTTTCTATTAT
ATTTCCCGCCCGTTGCCAATGCACCGAACACGGACGATCGTCCGATGACT
CGAATCGTACCGCAGCCCTACGCCGTTCCTTTATCCGCACTTGTTCTTTC
CGGACAGTTGGGCTACGCGCACGGTGTGTAAAGCTCCGACAACTCTGCCG
CCTGGCATGGATTGTCTTCAATTGTTGAAGGAGTTTGCGGAGCTTCAGCG
TGATGTGCAGGAACAGAAGAAGTGCCGCAGGTGCAAAAAACGCCTTTTAC
GTGTGACCTCATGGGAGTACGTCCGCCGTGAATCTCTTGCATCACCGTAT
ATCCTCTACGGGCCAGCTGTTATGGCGATGTCGTGGAGTTGTTGTAGTTG
TGGAGCACTTCACTTGGACGAATCATTGCCAGCGCGAGGGAAGCTGTGCA
GGCTGTGGTCTGAGACAGACGCGGTAGTTAGAGTTCTCGGAAGCGAGTGC
CCGATTCTGGAAACCAAAGAGAATGTGCCGGGCAGAGTGCGCTCGCTTGC
TGTCGAACCGGCGGGCGGTAAGTCGAAGGTGGATGAGCCCACGCGCGACG
TGCAAGAGCGTCGGGCGCCGGCGGGTGCAACAGCAGGAAATAGCACGAGG
GAGACGAACAGCCCTGACGACGCCGACGGGGGCGGCGGGGCTCCTGCGGG
GTTTTCATCCGGTCCGACAGACGGCGTCGGAGAACACCGGAGAACGACCG
GTGGAGCACAGCGAGACCCTCTCGCTGAGATGCCTACCGGTCTCCGACCG
AACAGTACCACAGGGTCGACAGCGGGATCAACTTCGTCTGGGTCGACAAG
GGGTGAGGAAATTTGCGCACGAAGCATTGTTGGACATACAACACGACAGG
TCATGCTAGAATTAATGTTTTTTGAGAGCATGTTGTTGTGTTTCTGTCTT
TATACAAAGAAACCGACCACTGTAAGGATACCTCCTTTCTAATTGCGCAT
CATTCCTGTGACCTCGCCGCCTCGAAACAGGAGGCGTGATTTACGGCAGG
TCTCGACGTACCGTAGACCCATGCCATGGGTGTCACCGACCGAACCTCAT
AGGGGGTTGTCGGTAACAGTCGCCGGACTGTTGAGGATGTGTGGCGCAGT
GCATGAGATGTCGAGTGGGTGCCCGGGCGCGTTGACGAAGGCGGTGTTTT
CACAGCCCAGGTCGGACTCCGATAACTTCAGTGCTAAGTGTCAGACGTGC
GCGGCGGTATTCGCGCGCATACCCATCAATAAACCTAGCCCCAAGTCCAT
CGCTCTCGGGGTGTTGTTTGCGGGTGGGACCATTGAGCATTTTTCTCACT
CCAGTGAATACAGCGACTGCCAGAGTCCTTCAATCACGACGTTAGGACGG
CACCTCCCTTCACTCTGCAATGCAGTCGACAAAGTCTTCACGGAAACCAT
CGCCGAGAACAAACTAAAGTGCAAGAGAGAGCCGGGACGTGGTCTCGTGA
AGATCGCCCCCGACAAGCACTACTTCGTGGCGAATGCCACTCGCCTGGAA
GAGACGATGGAGGCTGGGCTATCTGTGGAGGTATTTTTCCATGTAGAACG
CTCTTGCGGCCATAAAACGTAAGGTCGGGCATGGGCGTGTGATTGCCTGC
TTATCGCTGTTTTGATGGCGATCCTGTTGTAGATTGTGTTGCCGTGATAA
AGGCGCGGACAATGCCAAGTGGAGGAAAACTAAAAAAGTTATACTCTTGA
GGGTTACGGTTAGAATCTTTGAGGAAAAGTTCGTACTTTCTTGATCGTAG
AGGGGCAGGGCGCAGCAGATGGCTGGGATGTCGGTGAATAAACCACAATA
CGAGGAGGTGGGGTCATAATTCAACCTTTATACGGGGCAAAAACTGGCCA
ATATCGGGCCGGCTGGTACTTTCGAGTCCTTTGGCCCGTACAGGGTAACG
AGGGGAAGTGGAAAAGCCGCAAAGTTGTAACATAATATACGTCGAATAAT
GCAAAATAAAATACATCGAGTACGATATCGTGGGCGGGCCTCAGAACACG
CACCGGTGCATTCCTCATTGCCTTACAGGAAGGAGGTACCGACAACGCCA
CTCTTCCGGAAATCGCGGCATGCCTCATGATGGCCGCCAAGGCACGAGGC
GAAGAACCTGGTTGGGTCGTCAAGGACGGGTGTGTCTGGGCCACGCCGTT
ATCGGTACGTGGTCTTGTTGGGGTACGGCCGGGGCGAGTTTTGCGGTTCG
TTAAGCATAGTGCCACGAGCGACGTTCTGTCGACCCGGCATATGTTGTGG
TTGTTATAGTTTCCTGTCCCCCCCCCCCCCCCCTCCCCAACACTCCTTCT
CTCTACCCCCGACCCCAACAACACCGACACACTGCAAATCGCAGATTGCG
CTGGACGGGTCATACCGTAATCGGAATCACGCATCTCATGCTGTGAACGT
CATCGCGTCTGTACAGCTTATGGAGCCAGACCACCGCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1228:49397..52136+

>mRNA_P-littoralis_Contig1228.27.1 ID=mRNA_P-littoralis_Contig1228.27.1|Name=mRNA_P-littoralis_Contig1228.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1101bp|location=Sequence derived from alignment at P-littoralis_Contig1228:49397..52136+ (Pylaiella littoralis U1_48)
ATGATTGCCGAGCCGAAGGGATCCTATTTTTGGGCTACGCGCACGGTGTG
TAAAGCTCCGACAACTCTGCCGCCTGGCATGGATTGTCTTCAATTGTTGA
AGGAGTTTGCGGAGCTTCAGCGTGATGTGCAGGAACAGAAGAAGTGCCGC
AGGTGCAAAAAACGCCTTTTACGTGTGACCTCATGGGAGTACGTCCGCCG
TGAATCTCTTGCATCACCGTATATCCTCTACGGGCCAGCTGTTATGGCGA
TGTCGTGGAGTTGTTGTAGTTGTGGAGCACTTCACTTGGACGAATCATTG
CCAGCGCGAGGGAAGCTGTGCAGGCTGTGGTCTGAGACAGACGCGGTAGT
TAGAGTTCTCGGAAGCGAGTGCCCGATTCTGGAAACCAAAGAGAATGTGC
CGGGCAGAGTGCGCTCGCTTGCTGTCGAACCGGCGGGCGGTAAGTCGAAG
GTGGATGAGCCCACGCGCGACGTGCAAGAGCGTCGGGCGCCGGCGGGTGC
AACAGCAGGAAATAGCACGAGGGAGACGAACAGCCCTGACGACGCCGACG
GGGGCGGCGGGGCTCCTGCGGGGTTTTCATCCGGTCCGACAGACGGCGTC
GGAGAACACCGGAGAACGACCGGTGGAGCACAGCGAGACCCTCTCGCTGA
GATGCCTACCGGTCTCCGACCGAACAGTACCACAGGGTCGACAGCGGGAT
CAACTTCGTCTGGGTCGACAAGGGTCGACAAAGTCTTCACGGAAACCATC
GCCGAGAACAAACTAAAGTGCAAGAGAGAGCCGGGACGTGGTCTCGTGAA
GATCGCCCCCGACAAGCACTACTTCGTGGCGAATGCCACTCGCCTGGAAG
AGACGATGGAGGCTGGGCTATCTGTGGAGGAAGGAGGTACCGACAACGCC
ACTCTTCCGGAAATCGCGGCATGCCTCATGATGGCCGCCAAGGCACGAGG
CGAAGAACCTGGTTGGGTCGTCAAGGACGGGTGTGTCTGGGCCACGCCGT
TATCGATTGCGCTGGACGGGTCATACCGTAATCGGAATCACGCATCTCAT
GCTGTGAACGTCATCGCGTCTGTACAGCTTATGGAGCCAGACCACCGCGG
C
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