mRNA_P-littoralis_Contig1228.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1228.22.1
Unique NamemRNA_P-littoralis_Contig1228.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1228.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1228contigP-littoralis_Contig1228:35672..37283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons3
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.5787055-CDS-P-littoralis_Contig1228:35671..358231680789531.5787055-CDS-P-littoralis_Contig1228:35671..35823Pylaiella littoralis U1_48CDSP-littoralis_Contig1228 35672..35823 +
1680789531.5883372-CDS-P-littoralis_Contig1228:36327..363921680789531.5883372-CDS-P-littoralis_Contig1228:36327..36392Pylaiella littoralis U1_48CDSP-littoralis_Contig1228 36328..36392 +
1680789531.600066-CDS-P-littoralis_Contig1228:37134..372831680789531.600066-CDS-P-littoralis_Contig1228:37134..37283Pylaiella littoralis U1_48CDSP-littoralis_Contig1228 37135..37283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1228.22.1prot_P-littoralis_Contig1228.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1228 35672..37283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1228.22.1

>prot_P-littoralis_Contig1228.22.1 ID=prot_P-littoralis_Contig1228.22.1|Name=mRNA_P-littoralis_Contig1228.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
VAGVGVEGSGEAAARADNVVREAAAGGRTAAAVERAAKGKQPARGGKLPK
DYWTIALVCLCLGLSWPWALVRYGRRRRSKRAESAAAPIVKVNSVHQTPL
ASQKHRRHRLLPRQQRRLRPMV
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mRNA from alignment at P-littoralis_Contig1228:35672..37283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1228.22.1 ID=mRNA_P-littoralis_Contig1228.22.1|Name=mRNA_P-littoralis_Contig1228.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1612bp|location=Sequence derived from alignment at P-littoralis_Contig1228:35672..37283+ (Pylaiella littoralis U1_48)
GTCGCTGGCGTAGGGGTGGAAGGCTCGGGGGAAGCAGCAGCCAGGGCTGA
TAATGTCGTGAGGGAAGCAGCGGCAGGTGGGCGGACTGCTGCTGCCGTTG
AGCGTGCTGCCAAAGGCAAACAACCTGCAAGGGGTGGGAAGCTTCCAAAG
GAGTGAGTCCGTGTGACCTTTTTGTTTTGACTCTTTGTGCGCGGGCCGTC
ACACATCGTAACCCTAGCTAGATGTGACTGTACACCCTTTTTTTTCTTGG
ATAGAGAACAGATAAAACTACACATTCGTGGCGTTGTTTTTTCGTTGTTG
TGGGTAGACACAATGACATTGTTGTGTTACTTGTTCTTGTGGATAGATAC
AATAGCACCGTTCTTTTCTTGTTTATTGTAGTGGATAGATATAATCACAT
CGTTCTTGTACTGTTTTTTGTTTAGAAGATGGGCAAAATAGTACCGTTCA
GTTTTTTTTATCATTTGCGATACAGTAGAGAAAAGCACCCCGTTCATATA
ATGTTTGTTTTGTTGGAGTGGATAGACAAAATCACATCGTGCTTGTATAC
ATTTACTTTTATTGTGGCGGATGGAACAAATCGCATGTCATTTTTTGTTT
CTGTGTGATCACACTGTACTTTTTTTTTTTTTGTCGTTCGTCTATTGATC
TTACAGTTACTGGACCATCGCCCTGGTTTGCCTTTGCCTCGGTCTGTCAT
GGCCCTGGGCCCTGGTTCGATGTACGAAGTCATTCGAAGTATATGGTTAT
GGTTGAGGTTTGCCTTGGTTATTTTTTTTTGTCGGACTGTTTCCAATTTT
TGTTTTTCTTTCGAGCCTATTATTTTTTTTCTGTATTTTGTTTGGTACTC
TGGCCACCACAGATGGTACCCCAACGGTACCATATCTGATTTGACTGTGG
GTGATCATAGTCCATGTATTATTATTGTATATTACTTTCCTCCTAGCACG
ATATGTGCCTGGTTTGTGACCACGGGCTAGACTGCGGCGGTAGTGAGCTA
ATGTGAGAATCAACAACAACAACACTGTGATTGTACTCATTTTGTTTTCG
GTATTGCGTTTTCACACTGTGCTTGTATTTTTTTTAGGGTCAGGAAAGAG
CAAATCACACTTTTTTTTTCATTTTGTAGCGCGGAGAAAGTCCCGTCGTT
ATAACACCGACGTTCTTGTACTGTTTTTTGAAGTGCAAACATCACATGCT
CGCGAGAAAAAATCTCACGCATGTACCGCAGAAGGAAGGTGGGGGTAACT
CCTCCTGTGTTGACCTTCCTCCTGAGTGACTCCGTCGATGGGCCTAGCCT
GTAGTTTGAACCGCAGGGTGCAGACTAGTGTGCCAGAGAATATGGGATGA
CAACACATGTCCATGAAACCGTACCCATCTTGTATTCTACGTCGTTTCTT
TACTTCATAGACATAATCACCCTGCTGTTCTTATACCTTTTTTTTCAACG
TCGGCTGCGACAGATGGTAGGCGGAGAAGGAGTAAGAGAGCGGAGTCAGC
AGCGGCGCCAATCGTTAAGGTCAACAGCGTACACCAAACGCCACTGGCAA
GCCAGAAACACCGCCGTCATCGCTTGCTGCCACGCCAACAACGTCGACTG
CGCCCAATGGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1228:35672..37283+

>mRNA_P-littoralis_Contig1228.22.1 ID=mRNA_P-littoralis_Contig1228.22.1|Name=mRNA_P-littoralis_Contig1228.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig1228:35672..37283+ (Pylaiella littoralis U1_48)
GTCGCTGGCGTAGGGGTGGAAGGCTCGGGGGAAGCAGCAGCCAGGGCTGA
TAATGTCGTGAGGGAAGCAGCGGCAGGTGGGCGGACTGCTGCTGCCGTTG
AGCGTGCTGCCAAAGGCAAACAACCTGCAAGGGGTGGGAAGCTTCCAAAG
GATTACTGGACCATCGCCCTGGTTTGCCTTTGCCTCGGTCTGTCATGGCC
CTGGGCCCTGGTTCGATATGGTAGGCGGAGAAGGAGTAAGAGAGCGGAGT
CAGCAGCGGCGCCAATCGTTAAGGTCAACAGCGTACACCAAACGCCACTG
GCAAGCCAGAAACACCGCCGTCATCGCTTGCTGCCACGCCAACAACGTCG
ACTGCGCCCAATGGTA
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