mRNA_P-littoralis_Contig1228.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1228.10.1
Unique NamemRNA_P-littoralis_Contig1228.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1228.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1228contigP-littoralis_Contig1228:7982..8365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size386
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.6662524-CDS-P-littoralis_Contig1228:7981..83561680789531.6662524-CDS-P-littoralis_Contig1228:7981..8356Pylaiella littoralis U1_48CDSP-littoralis_Contig1228 7982..8356 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.677408-UTR-P-littoralis_Contig1228:8356..83651680789531.677408-UTR-P-littoralis_Contig1228:8356..8365Pylaiella littoralis U1_48UTRP-littoralis_Contig1228 8357..8365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1228.10.1prot_P-littoralis_Contig1228.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1228 7982..8356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1228.10.1

>prot_P-littoralis_Contig1228.10.1 ID=prot_P-littoralis_Contig1228.10.1|Name=mRNA_P-littoralis_Contig1228.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
NIERCACPCQLLSRTRSVLAQNKTSETPHELGKCATRRRDPTETLKQIIG
SERTNEIQKWWPSTNNASTSLFTTLETTKSPWTGILFICPGALENGRWKR
VRYSISMPCFTRVPTFFIPRSAQQ*
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mRNA from alignment at P-littoralis_Contig1228:7982..8365+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1228.10.1 ID=mRNA_P-littoralis_Contig1228.10.1|Name=mRNA_P-littoralis_Contig1228.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig1228:7982..8365+ (Pylaiella littoralis U1_48)
AACATCGAGAGATGTGCCTGCCCTTGCCAATTGCTCAGTAGAACGCGTTC
GGTGCTTGCCCAAAACAAAACATCAGAAACACCGCATGAACTTGGAAAAT
GCGCGACCAGACGGAGAGATCCGACAGAAACATTGAAACAGATCATCGGA
AGCGAAAGGACAAACGAAATCCAGAAGTGGTGGCCGTCTACGAATAACGC
CTCAACATCCTTGTTTACAACGCTAGAGACCACTAAATCTCCGTGGACAG
GCATTTTGTTTATTTGTCCTGGTGCTTTAGAAAATGGAAGGTGGAAACGT
GTGCGATACTCCATCAGTATGCCTTGTTTTACGAGAGTCCCGACGTTTTT
CATCCCCAGATCCGCACAGCAGTGAATCTCGTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1228:7982..8365+

>mRNA_P-littoralis_Contig1228.10.1 ID=mRNA_P-littoralis_Contig1228.10.1|Name=mRNA_P-littoralis_Contig1228.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig1228:7982..8365+ (Pylaiella littoralis U1_48)
AACATCGAGAGATGTGCCTGCCCTTGCCAATTGCTCAGTAGAACGCGTTC
GGTGCTTGCCCAAAACAAAACATCAGAAACACCGCATGAACTTGGAAAAT
GCGCGACCAGACGGAGAGATCCGACAGAAACATTGAAACAGATCATCGGA
AGCGAAAGGACAAACGAAATCCAGAAGTGGTGGCCGTCTACGAATAACGC
CTCAACATCCTTGTTTACAACGCTAGAGACCACTAAATCTCCGTGGACAG
GCATTTTGTTTATTTGTCCTGGTGCTTTAGAAAATGGAAGGTGGAAACGT
GTGCGATACTCCATCAGTATGCCTTGTTTTACGAGAGTCCCGACGTTTTT
CATCCCCAGATCCGCACAGCAGTGA
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