mRNA_P-littoralis_Contig1227.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1227.3.1
Unique NamemRNA_P-littoralis_Contig1227.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1227.3.1 vs. uniprot
Match: A0A0A1WMC4_ZEUCU (Putative AC9 transposase n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WMC4_ZEUCU)

HSP 1 Score: 64.7 bits (156), Expect = 1.640e-11
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 DELNWWCRHQFAFPCLARLAIKYLVIPPSSAASERIFSMADGIVTKNGNRLEDDTMNALVFLN 189
            D + WW  +   +P L++LA K L IP SSAASER+FS+A  I+T+  NR+   T+++++FLN
Sbjct:   90 DVMQWWLNNNKRYPRLSKLAEKVLAIPASSAASERVFSLAGNIITEKRNRIAPKTVDSILFLN 152          
BLAST of mRNA_P-littoralis_Contig1227.3.1 vs. uniprot
Match: A0A1X7SR93_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SR93_AMPQE)

HSP 1 Score: 61.6 bits (148), Expect = 1.590e-10
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 DELNWWCRHQFAFPCLARLAIKYLVIPPSSAASERIFSMADGIVTKNGNRLEDDTMNALVFLN 189
            D   WW ++Q  FP L+ +A K L IP +S  SERIFS+A GIVTK    L+ + ++ LVFLN
Sbjct:   67 DVFEWWRKNQEMFPHLSDIARKLLCIPATSVPSERIFSVAGGIVTKKRTNLKPENVDMLVFLN 129          
BLAST of mRNA_P-littoralis_Contig1227.3.1 vs. uniprot
Match: A0A667YW07_9TELE (BED-type domain-containing protein n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667YW07_9TELE)

HSP 1 Score: 63.9 bits (154), Expect = 2.280e-10
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 DELNWWCRHQFAFPCLARLAIKYLVIPPSSAASERIFSMADGIVTKNGNRLEDDTMNALVFLN 189
            D L WW +H+  +P ++RLA K+L IP +S ASER+FS A   V+K  +RL  D ++ L+FLN
Sbjct:  514 DPLEWWKKHEQQYPIMSRLARKFLCIPATSVASERVFSAAGQAVSKLRSRLLPDNVDKLIFLN 576          
BLAST of mRNA_P-littoralis_Contig1227.3.1 vs. uniprot
Match: UPI000CF7E595 (zinc finger BED domain-containing protein 1-like n=1 Tax=Oryzias melastigma TaxID=30732 RepID=UPI000CF7E595)

HSP 1 Score: 62.8 bits (151), Expect = 4.510e-10
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 DELNWWCRHQFAFPCLARLAIKYLVIPPSSAASERIFSMADGIVTKNGNRLEDDTMNALVFL 186
            + L WW  H+ AFP L +LA +YL IP +S A+ER+FS A  IVT   + L  D ++ LVFL
Sbjct:  222 NPLKWWSSHEAAFPLLGKLAKRYLCIPGTSVAAERVFSTAGDIVTAQRSNLSPDHVDQLVFL 283          
BLAST of mRNA_P-littoralis_Contig1227.3.1 vs. uniprot
Match: A0A2I4AX02_9TELE (zinc finger BED domain-containing protein 1-like n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4AX02_9TELE)

HSP 1 Score: 62.8 bits (151), Expect = 5.760e-10
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 DELNWWCRHQFAFPCLARLAIKYLVIPPSSAASERIFSMADGIVTKNGNRLEDDTMNALVFL 186
            D L WW  H+  FP +++LA KYL IP +S ASER+FS    +VT   + L+  T+N LVFL
Sbjct:  379 DPLTWWKMHEVNFPLISQLAKKYLCIPATSTASERVFSAGGNVVTCQRSLLKPATVNMLVFL 440          
BLAST of mRNA_P-littoralis_Contig1227.3.1 vs. uniprot
Match: UPI00168D7D3B (zinc finger BED domain-containing protein 1 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=UPI00168D7D3B)

HSP 1 Score: 62.8 bits (151), Expect = 5.770e-10
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 DELNWWCRHQFAFPCLARLAIKYLVIPPSSAASERIFSMADGIVTKNGNRLEDDTMNALVFL 186
            + L WW  H+ AFP L +LA +YL IP +S A+ER+FS A  IVT   + L  D ++ LVFL
Sbjct:  377 NPLQWWSSHEAAFPLLGKLAKRYLCIPGTSVAAERVFSTAGDIVTAQRSNLSPDHVDQLVFL 438          
BLAST of mRNA_P-littoralis_Contig1227.3.1 vs. uniprot
Match: UPI001560B2FC (zinc finger BED domain-containing protein 1-like n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=UPI001560B2FC)

HSP 1 Score: 62.8 bits (151), Expect = 5.840e-10
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 DELNWWCRHQFAFPCLARLAIKYLVIPPSSAASERIFSMADGIVTKNGNRLEDDTMNALVFL 186
            D L WW   Q  FP L +LA KYL IP +SAA ER+FS    IVT    RL+ DT++ LVFL
Sbjct:  583 DPLIWWKAQQTNFPRLCKLAQKYLCIPATSAACERVFSTCGNIVTCKQTRLKPDTVDKLVFL 644          
BLAST of mRNA_P-littoralis_Contig1227.3.1 vs. uniprot
Match: UPI001C05428F (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C05428F)

HSP 1 Score: 60.8 bits (146), Expect = 1.700e-9
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    1 DELNWWCRHQFAFPCLARLAIKYLVIPPSSAASERIFSMADGIVTKNGNRLEDDTMNALVFL 186
            D L+WW  H+ +FP LA+LA +YL IP +S A+ER+FS A  IVT   + L    ++ L+FL
Sbjct:  181 DPLHWWSLHEASFPLLAKLAKRYLCIPGTSVAAERVFSTAGDIVTAQRSNLTPHHVDQLLFL 242          
BLAST of mRNA_P-littoralis_Contig1227.3.1 vs. uniprot
Match: UPI001B7EA1F8 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7EA1F8)

HSP 1 Score: 61.2 bits (147), Expect = 2.050e-9
Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 DELNWWCRHQFAFPCLARLAIKYLVIPPSSAASERIFSMADGIVTKNGNRLEDDTMNALVFL 186
            D L WW   Q  FP L +LA KYL IP +S+ASER+FS    +VT    RL+ D ++ LVFL
Sbjct:  732 DPLIWWKAQQANFPRLCKLAQKYLCIPATSSASERVFSTCGSVVTCKQTRLKPDAVDRLVFL 793          
BLAST of mRNA_P-littoralis_Contig1227.3.1 vs. uniprot
Match: A0A1S3D3P9_DIACI (zinc finger BED domain-containing protein 1 n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A1S3D3P9_DIACI)

HSP 1 Score: 60.8 bits (146), Expect = 2.780e-9
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 DELNWWCRHQFAFPCLARLAIKYLVIPPSSAASERIFSMADGIVTKNGNRLEDDTMNALVFL 186
            D   WW   +  FP +ARLA KYL IP +SAA+ER+FS A   VT   N L  + +N LVFL
Sbjct:  536 DLYEWWHHREKKFPAVARLAKKYLTIPATSAAAERVFSSAGNTVTAKRNCLLPENVNMLVFL 597          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1227.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A1WMC4_ZEUCU1.640e-1146.03Putative AC9 transposase n=1 Tax=Zeugodacus cucurb... [more]
A0A1X7SR93_AMPQE1.590e-1049.21Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A667YW07_9TELE2.280e-1047.62BED-type domain-containing protein n=1 Tax=Myripri... [more]
UPI000CF7E5954.510e-1048.39zinc finger BED domain-containing protein 1-like n... [more]
A0A2I4AX02_9TELE5.760e-1048.39zinc finger BED domain-containing protein 1-like n... [more]
UPI00168D7D3B5.770e-1048.39zinc finger BED domain-containing protein 1 n=1 Ta... [more]
UPI001560B2FC5.840e-1053.23zinc finger BED domain-containing protein 1-like n... [more]
UPI001C05428F1.700e-946.77E3 SUMO-protein ligase ZBED1-like n=1 Tax=Melanota... [more]
UPI001B7EA1F82.050e-950.00E3 SUMO-protein ligase ZBED1-like n=1 Tax=Polyodon... [more]
A0A1S3D3P9_DIACI2.780e-950.00zinc finger BED domain-containing protein 1 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1227contigP-littoralis_Contig1227:43027..43215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog69293.ENSGACP00000001005
PFAMsDimer_Tnp_hAT,zf-BED
Model size189
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.35e-11
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,3AGZG@33154|Opisthokonta,3BX4G@33208|Metazoa,3DFW8@33213|Bilateria,48I3Q@7711|Chordata,49E4Y@7742|Vertebrata
DescriptionhAT family C-terminal dimerisation region
Cds size189
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.5458293-CDS-P-littoralis_Contig1227:43026..432151680789531.5458293-CDS-P-littoralis_Contig1227:43026..43215Pylaiella littoralis U1_48CDSP-littoralis_Contig1227 43027..43215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1227.3.1prot_P-littoralis_Contig1227.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1227 43027..43215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1227.3.1

>prot_P-littoralis_Contig1227.3.1 ID=prot_P-littoralis_Contig1227.3.1|Name=mRNA_P-littoralis_Contig1227.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
DELNWWCRHQFAFPCLARLAIKYLVIPPSSAASERIFSMADGIVTKNGNR
LEDDTMNALVFLN
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mRNA from alignment at P-littoralis_Contig1227:43027..43215-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1227.3.1 ID=mRNA_P-littoralis_Contig1227.3.1|Name=mRNA_P-littoralis_Contig1227.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig1227:43027..43215- (Pylaiella littoralis U1_48)
GACGAACTGAACTGGTGGTGCCGGCACCAGTTCGCTTTCCCGTGTCTGGC GAGGTTGGCAATCAAGTATCTGGTCATTCCGCCGTCATCAGCGGCGTCCG AGCGCATCTTCTCCATGGCCGACGGCATCGTGACCAAGAACGGCAACCGC CTCGAGGACGATACAATGAATGCGCTTGTTTTTTTGAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1227:43027..43215-

>mRNA_P-littoralis_Contig1227.3.1 ID=mRNA_P-littoralis_Contig1227.3.1|Name=mRNA_P-littoralis_Contig1227.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig1227:43027..43215- (Pylaiella littoralis U1_48)
GACGAACTGAACTGGTGGTGCCGGCACCAGTTCGCTTTCCCGTGTCTGGC
GAGGTTGGCAATCAAGTATCTGGTCATTCCGCCGTCATCAGCGGCGTCCG
AGCGCATCTTCTCCATGGCCGACGGCATCGTGACCAAGAACGGCAACCGC
CTCGAGGACGATACAATGAATGCGCTTGTTTTTTTGAAC
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