mRNA_P-littoralis_Contig1225.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1225.8.1
Unique NamemRNA_P-littoralis_Contig1225.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1225.8.1 vs. uniprot
Match: A0A6H5JIS8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 9.700e-10
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = -2 
Query:    3 EVLAAVAGTAGQQQKSSVADNFDGFVRVRSNCQRGWKTATDVDVFEWLCWLDSHGRGTKLVH 188
            E+ AA++G AG+ +K  VAD FD F+   S   +GW  A+  DV +W  +LDS G+GTKLVH
Sbjct:  678 EMEAAMSGRAGEVRKHRVADEFDLFLLSYSGGGKGWVHASPDDVVDWFSYLDSQGKGTKLVH 739
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1225.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIS8_9PHAE9.700e-1048.39Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1225contigP-littoralis_Contig1225:9548..9847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size301
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.3029273-CDS-P-littoralis_Contig1225:9547..98471680789531.3029273-CDS-P-littoralis_Contig1225:9547..9847Pylaiella littoralis U1_48CDSP-littoralis_Contig1225 9548..9847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1225.8.1prot_P-littoralis_Contig1225.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1225 9548..9847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1225.8.1

>prot_P-littoralis_Contig1225.8.1 ID=prot_P-littoralis_Contig1225.8.1|Name=mRNA_P-littoralis_Contig1225.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
TCTSFVPLPCESSQHSHSKTSTSVAVFQPRWQFERTRTKPSKLSATELFC
CCPAVPATAASTSLMRSLSLVSTMTAGGPEVRGTGSPRYAGSLQNWQNM*
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mRNA from alignment at P-littoralis_Contig1225:9548..9847+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1225.8.1 ID=mRNA_P-littoralis_Contig1225.8.1|Name=mRNA_P-littoralis_Contig1225.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig1225:9548..9847+ (Pylaiella littoralis U1_48)
ACGTGCACGAGTTTTGTCCCTCTCCCGTGTGAGTCTAGCCAACATAGCCA
CTCAAAGACGTCGACATCGGTAGCTGTCTTCCAGCCCCGCTGGCAGTTTG
AACGTACCCGGACAAAACCATCGAAGTTGTCGGCTACCGAACTTTTCTGT
TGTTGTCCGGCGGTGCCCGCTACCGCTGCTAGTACTTCCTTAATGCGCTC
GTTAAGTTTAGTCTCTACGATGACCGCTGGGGGCCCGGAGGTACGAGGCA
CCGGCTCTCCACGATACGCGGGTTCCTTACAGAATTGGCAGAATATGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1225:9548..9847+

>mRNA_P-littoralis_Contig1225.8.1 ID=mRNA_P-littoralis_Contig1225.8.1|Name=mRNA_P-littoralis_Contig1225.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig1225:9548..9847+ (Pylaiella littoralis U1_48)
ACGTGCACGAGTTTTGTCCCTCTCCCGTGTGAGTCTAGCCAACATAGCCA
CTCAAAGACGTCGACATCGGTAGCTGTCTTCCAGCCCCGCTGGCAGTTTG
AACGTACCCGGACAAAACCATCGAAGTTGTCGGCTACCGAACTTTTCTGT
TGTTGTCCGGCGGTGCCCGCTACCGCTGCTAGTACTTCCTTAATGCGCTC
GTTAAGTTTAGTCTCTACGATGACCGCTGGGGGCCCGGAGGTACGAGGCA
CCGGCTCTCCACGATACGCGGGTTCCTTACAGAATTGGCAGAATATGTAA
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