mRNA_P-littoralis_Contig1225.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1225.19.1
Unique NamemRNA_P-littoralis_Contig1225.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1225.19.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.440e-12
Identity = 44/133 (33.08%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  193 KQLRVRFASVLDYAGREWGRRRRERCCA--------CPLAALSLLARLYAGVDTTSCQAERNFSALNQVLCDRRAGILPHKIEKMLLLRLNRHLIPGFATVTEKLGALKAKCDVQAAVSVAAQSAREGTVVEI 567
            +Q+ V   +VL +    W RR  +  C+          +  L+ +ARL+ G++ +SCQAERNFSAL+ ++   R  +L  K+E+M+L+RLNRHL+     +   +   +AK    A  SVA Q  R    +++
Sbjct:  139 EQVEVDDFNVLGF----WNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARAKAAKSAQKSVACQEERANKSIDL 267          
BLAST of mRNA_P-littoralis_Contig1225.19.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.310e-11
Identity = 49/132 (37.12%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  196 QLRVRFASVLDYAGREWGRRRRERCCA--------CPLAALSLLARLYAGVDTTSCQAERNFSALNQVLCDRRAGILPHKIEKMLLLRLNRHLIPGFATVTEKLGALKAKCDVQAAVSVAAQSAREGTVVEI 567
            QL V   +VL Y    W RR  +   A          +  L+ +ARLY G++ TSCQAERNFSAL  ++   R  +LP K+E+M+ +RLNRHL+     +   +   KA     A  S+AAQ  R    V++
Sbjct:  522 QLDVDGFNVLGY----WNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKVAQSSMAAQEERANQTVDL 649          
BLAST of mRNA_P-littoralis_Contig1225.19.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.380e-11
Identity = 44/133 (33.08%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  193 KQLRVRFASVLDYAGREWGRRRRERCCA--------CPLAALSLLARLYAGVDTTSCQAERNFSALNQVLCDRRAGILPHKIEKMLLLRLNRHLIPGFATVTEKLGALKAKCDVQAAVSVAAQSAREGTVVEI 567
            +Q+ V   +VL +    W RR  +  C+          +  L+ +ARL+ G++ +SCQAERNFSAL+ ++   R  +L  K+E+M+L+RLNRHL+     +   +   +AK    A  SVA Q  R    +++
Sbjct:  704 EQVEVDDFNVLGF----WNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARAKAAKSAQKSVACQEERANKSIDL 832          
BLAST of mRNA_P-littoralis_Contig1225.19.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.380e-11
Identity = 49/132 (37.12%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  196 QLRVRFASVLDYAGREWGRRRRERCCA--------CPLAALSLLARLYAGVDTTSCQAERNFSALNQVLCDRRAGILPHKIEKMLLLRLNRHLIPGFATVTEKLGALKAKCDVQAAVSVAAQSAREGTVVEI 567
            QL V   +VL Y    W RR  +   A          +  L+ +ARLY G++ TSCQAERNFSAL  ++   R  +LP K+E+M+ +RLNRHL+     +   +   KA     A  S+AAQ  R    V++
Sbjct:  717 QLDVDGFNVLGY----WNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKVAQSSMAAQEERANQTVDL 844          
BLAST of mRNA_P-littoralis_Contig1225.19.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.250e-11
Identity = 36/92 (39.13%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  292 LSLLARLYAGVDTTSCQAERNFSALNQVLCDRRAGILPHKIEKMLLLRLNRHLIPGFATVTEKLGALKAKCDVQAAVSVAAQSAREGTVVEI 567
            L+ +ARL+ G++ TSCQAERNFSAL  ++ + R  +LPH++E+M+L+RLNR ++         +   +      AA S AAQ  R    ++I
Sbjct:  450 LAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRMLDEVRAFDAAVSRAREMATKNAAKSAAAQEERANKPIDI 541          
BLAST of mRNA_P-littoralis_Contig1225.19.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 5.280e-11
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  292 LSLLARLYAGVDTTSCQAERNFSALNQVLCDRRAGILPHKIEKMLLLRLNRHLIPGFATVTEKLGALKAKCDVQAAVSVAAQSAREGTVVEI 567
            L+ +ARLY G++ TSCQAERNFSA + ++   R  ILP K E+ + +RLNRHL+     +   +   KA     A  S+AAQ  R    V++
Sbjct:  347 LAFIARLYLGIEATSCQAERNFSARSHLIGQLRCKILPSKFERTMFIRLNRHLVAEVRELDAAVAQAKATATKTAQSSMAAQGERANQTVDL 438          
BLAST of mRNA_P-littoralis_Contig1225.19.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.040e-10
Identity = 48/126 (38.10%), Postives = 76/126 (60.32%), Query Frame = 1
Query:  217 SVLDYAGREWGRRRRERCCACP------LAALSLLARLYAGVDTTSCQAERNFSALNQVLCDRRAGILPHKIEKMLLLRLNRHLIPGFATVTEKLGALKA---KCDVQAAVSVAAQSAREGTVVEI 567
            S+L++    W RR + R CA        L  L+L+ARL+ G+++TSCQAERNFSAL  ++   R+ +LP K+E+++ LRLNR  IP    + + + A KA   +C  + A  V A++A +  V+ +
Sbjct:  387 SLLEF----WQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVA-QVEAEAAGDAVVLTL 507          
BLAST of mRNA_P-littoralis_Contig1225.19.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.170e-10
Identity = 48/126 (38.10%), Postives = 76/126 (60.32%), Query Frame = 1
Query:  217 SVLDYAGREWGRRRRERCCACP------LAALSLLARLYAGVDTTSCQAERNFSALNQVLCDRRAGILPHKIEKMLLLRLNRHLIPGFATVTEKLGALKA---KCDVQAAVSVAAQSAREGTVVEI 567
            S+L++    W RR + R CA        L  L+L+ARL+ G+++TSCQAERNFSAL  ++   R+ +LP K+E+++ LRLNR  IP    + + + A KA   +C  + A  V A++A +  V+ +
Sbjct:  715 SLLEF----WQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVA-QVEAEAAGDAVVLTL 835          
BLAST of mRNA_P-littoralis_Contig1225.19.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.780e-10
Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  292 LSLLARLYAGVDTTSCQAERNFSALNQVLCDRRAGILPHKIEKMLLLRLNRHLIPGFATVTEKLGALKAKCDVQAAVSVAAQSAREGTVVEI 567
            L+ +ARL+ G++ TSCQAERNFSAL  ++ D    +L H++E+M+L+RLN+HL+         +   +A     A  S  AQ  R  T +++
Sbjct:  554 LAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLLAEVRAYDAAVAWARAMAANSAEKSAVAQEERANTAIDV 645          
BLAST of mRNA_P-littoralis_Contig1225.19.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.650e-9
Identity = 40/91 (43.96%), Postives = 60/91 (65.93%), Query Frame = 1
Query:  292 LSLLARLYAGVDTTSCQAERNFSALNQVLCDRRAGILPHKIEKMLLLRLNRHLIPGFATVTEKLGALKAKCDVQAAVSVAAQSAREGTVVE 564
            L+ +ARL+ G++ TSCQAERNFSAL  ++   R  +L  K+E+M+L+RLNRHL+        ++ AL A   V  A ++AA+SARE  + +
Sbjct:  436 LAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLLA-------EVRALDAA--VAQARAMAAKSARESGIAQ 517          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1225.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KJT6_9PHAE4.440e-1233.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE1.310e-1137.12Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JRT6_9PHAE1.380e-1133.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGG8_9PHAE1.380e-1137.12Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JXV5_9PHAE4.250e-1139.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE5.280e-1141.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE1.040e-1038.10Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE1.170e-1038.10Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JQI6_9PHAE2.780e-1038.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE1.650e-943.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1225contigP-littoralis_Contig1225:48612..49181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size572
Hectar predicted targeting categoryother localisation
Exons1
Cds size570
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.3803246-CDS-P-littoralis_Contig1225:48611..491811680789531.3803246-CDS-P-littoralis_Contig1225:48611..49181Pylaiella littoralis U1_48CDSP-littoralis_Contig1225 48612..49181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1225.19.1prot_P-littoralis_Contig1225.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1225 48612..49181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1225.19.1

>prot_P-littoralis_Contig1225.19.1 ID=prot_P-littoralis_Contig1225.19.1|Name=mRNA_P-littoralis_Contig1225.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=190bp
GGGFGGGWCRVALADHTHAFQDGETQSETRQRGRPSTRRCGCARESGSRS
RAGVHLVHERGGPLKQLRVRFASVLDYAGREWGRRRRERCCACPLAALSL
LARLYAGVDTTSCQAERNFSALNQVLCDRRAGILPHKIEKMLLLRLNRHL
IPGFATVTEKLGALKAKCDVQAAVSVAAQSAREGTVVEI*
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mRNA from alignment at P-littoralis_Contig1225:48612..49181-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1225.19.1 ID=mRNA_P-littoralis_Contig1225.19.1|Name=mRNA_P-littoralis_Contig1225.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=570bp|location=Sequence derived from alignment at P-littoralis_Contig1225:48612..49181- (Pylaiella littoralis U1_48)
GGGGGCGGCTTTGGGGGCGGGTGGTGCCGGGTCGCCCTCGCCGACCACAC CCACGCTTTCCAGGATGGAGAAACTCAAAGCGAAACGCGACAAAGAGGTC GCCCGTCCACCCGGCGATGTGGATGCGCCAGAGAGTCGGGCAGTCGCAGC AGAGCAGGAGTTCACCTCGTACATGAAAGAGGCGGCCCCCTCAAACAACT CCGAGTTCGATTTGCTTCAGTACTGGACTACGCGGGGCGTGAATGGGGTA GACGCAGAAGGGAACGTTGTTGTGCCTGCCCGCTGGCCGCACTAAGTTTG CTAGCAAGGTTGTACGCAGGGGTCGATACCACAAGCTGTCAAGCAGAGAG GAATTTTTCAGCTCTCAACCAAGTACTGTGTGACAGGCGAGCCGGTATCC TACCCCACAAGATCGAGAAGATGTTGCTGCTGAGGCTCAACCGCCACCTC ATTCCTGGTTTTGCGACCGTAACAGAAAAATTGGGAGCCTTGAAGGCGAA GTGCGATGTACAGGCGGCTGTATCCGTTGCCGCCCAGAGCGCCCGTGAGG GTACTGTTGTGGAGATTTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1225:48612..49181-

>mRNA_P-littoralis_Contig1225.19.1 ID=mRNA_P-littoralis_Contig1225.19.1|Name=mRNA_P-littoralis_Contig1225.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=570bp|location=Sequence derived from alignment at P-littoralis_Contig1225:48612..49181- (Pylaiella littoralis U1_48)
GGGGGCGGCTTTGGGGGCGGGTGGTGCCGGGTCGCCCTCGCCGACCACAC
CCACGCTTTCCAGGATGGAGAAACTCAAAGCGAAACGCGACAAAGAGGTC
GCCCGTCCACCCGGCGATGTGGATGCGCCAGAGAGTCGGGCAGTCGCAGC
AGAGCAGGAGTTCACCTCGTACATGAAAGAGGCGGCCCCCTCAAACAACT
CCGAGTTCGATTTGCTTCAGTACTGGACTACGCGGGGCGTGAATGGGGTA
GACGCAGAAGGGAACGTTGTTGTGCCTGCCCGCTGGCCGCACTAAGTTTG
CTAGCAAGGTTGTACGCAGGGGTCGATACCACAAGCTGTCAAGCAGAGAG
GAATTTTTCAGCTCTCAACCAAGTACTGTGTGACAGGCGAGCCGGTATCC
TACCCCACAAGATCGAGAAGATGTTGCTGCTGAGGCTCAACCGCCACCTC
ATTCCTGGTTTTGCGACCGTAACAGAAAAATTGGGAGCCTTGAAGGCGAA
GTGCGATGTACAGGCGGCTGTATCCGTTGCCGCCCAGAGCGCCCGTGAGG
GTACTGTTGTGGAGATTTAG
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