mRNA_P-littoralis_Contig1225.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1225.15.1
Unique NamemRNA_P-littoralis_Contig1225.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1225.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1225contigP-littoralis_Contig1225:32918..34609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size351
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.2295198-CDS-P-littoralis_Contig1225:32917..330191680789531.2295198-CDS-P-littoralis_Contig1225:32917..33019Pylaiella littoralis U1_48CDSP-littoralis_Contig1225 32918..33019 +
1680789531.2382443-CDS-P-littoralis_Contig1225:34360..346091680789531.2382443-CDS-P-littoralis_Contig1225:34360..34609Pylaiella littoralis U1_48CDSP-littoralis_Contig1225 34361..34609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1225.15.1prot_P-littoralis_Contig1225.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1225 32918..34609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1225.15.1

>prot_P-littoralis_Contig1225.15.1 ID=prot_P-littoralis_Contig1225.15.1|Name=mRNA_P-littoralis_Contig1225.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
SGEAAARADNVVREAAAGGRTAAAVERAAKGNQPMVGGEGVRERSQQRRQ
SLRLTAVHQTPLASQKHRRHRLLPRQRRRLRPMVGRGKGRERTQQRHQSL
RQTAAQRRPLTSRIRL*
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mRNA from alignment at P-littoralis_Contig1225:32918..34609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1225.15.1 ID=mRNA_P-littoralis_Contig1225.15.1|Name=mRNA_P-littoralis_Contig1225.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1692bp|location=Sequence derived from alignment at P-littoralis_Contig1225:32918..34609+ (Pylaiella littoralis U1_48)
TCGGGGGAAGCAGCAGCCAGGGCTGATAATGTCGTGAGGGAAGCAGCGGC
AGGTGGGCGGACTGCTGCTGCCGTTGAGCGTGCTGCCAAAGGCAACCAAC
CTGTAAGGGGTGGGAAGCTTCCAAAGGAGTGAGTCCGTGTGACCTTTTTG
TTTTGACTCTTTGTGCGCGGGCCGTCACACATCGTAACCCTAGCTAGATG
TGACTGTACACCCTTTTTTTTTCTTGGATAGAGAACAGATAAAACTACAC
ATTCGTGGCGTTGTTTTTTCGTTGTTGTGGATAGACACAATGACATTGTT
GTGTTACTTGTTCTTCTGGATATATACAATAGCACCGTTCTTTTCTTGTT
TATTGTAGTGGATAGATATAATCACATCGTTCTTGTACTGTTTTTTGTTT
AGAAGATGGGCAAAATGGTACCGTTCAGTTTTTTTTATCATTTGCGATAC
AGTAGAGAAAATCACCCCGTTCATATAATGTTTGTTTTGTTGGAGTGGAT
AGACAAAATCACATCGTGCTTGTATATACGGAGTATTTACTTTTTTTGTG
GCGGATGGAACAAATCGCATATTTTTTTTTGTTACTGTGTGATCACACTG
TACTTTTTTATTTTTTGTCGTTCGTCTATTGATCTTATACTTACTGGACC
ATCGCCCTGGTTTGCCTTTGCCTTGGTCTGTCATGGCCCTGGGCCCTGGT
TCGATGTACGAAGTACTTCGAAGTATATGGTTATGGTTGAGGTTTGTCTC
GGTTATTTTTTTTTTGTCGGACTGTCTCCGATTTTTGTTTTTCTTTCGAG
CCTGTTATTTTTTTTCTGTATTTTGTTTGGCACTCTGGCCACCACAGATG
GTACCCCAACGGTACCATATCTGATTTGACTGTGGGTGATCATAGTCCAT
ATATTATTATTGTATTTTACTTTTCCTCCTAGCACGATATGTGCCTGGTT
TGTGACCACGGGCTAGACTGCGGCGGTAGTGAGCTAATGTGAGAATCAAC
AACACTGTGATTGTACTCATTTTGTTTTCGGTATTGCGTTTTCACACTGT
GCTTGTATTTTTTTTAGGGTCAGGAAAGAGCAAATCACACTTTTTTTTTC
ATTTTGTAGCGCGTAGAAAATCCCGTCGTTATAACACCGACTTTCTTGTA
CTGTTTTTTGAAGTGCAAACATCACATGCTCGCGAGAAAAAATCTCACGC
ATGTACCGCAGAAGGAAGGTGGGGGAAACTCCTCCTGTGTTGACCTTCCT
CCTGTGTGACCCCGTCGATGGGCCTAGCCTGTAGTTTGAACCGCAGGGTG
CAGACTAGTGTGCCAGAGAATATGGGATGACAACACATGTCCATGAAACC
ATACCCATCTTGTATTGTACGTCGTTTCTTTACTTCATAGACATAATCAC
CCTGCTGTTCTTGTACCTTTTTTTTCAACGTCGGCTGCGACAGATGGTAG
GCGGAGAAGGAGTAAGAGAGCGGAGTCAGCAGCGGCGCCAATCGTTAAGG
TTAACAGCgGTACACCAAACGCCACTGGCAAGCCAGAAACACCGCCGTCA
TCGCTTGCTGCCACGCCAACGACGTCGACTGCGCCCAATGGTAGGAAGAG
GAAAAGGAAGGGAGCGGACCCAGCAGCGGCACCAATCATTGAGGCAGACA
GCGGCACAGCGACGGCCATTGACCTCGAGAATACGTCTGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1225:32918..34609+

>mRNA_P-littoralis_Contig1225.15.1 ID=mRNA_P-littoralis_Contig1225.15.1|Name=mRNA_P-littoralis_Contig1225.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig1225:32918..34609+ (Pylaiella littoralis U1_48)
TCGGGGGAAGCAGCAGCCAGGGCTGATAATGTCGTGAGGGAAGCAGCGGC
AGGTGGGCGGACTGCTGCTGCCGTTGAGCGTGCTGCCAAAGGCAACCAAC
CTATGGTAGGCGGAGAAGGAGTAAGAGAGCGGAGTCAGCAGCGGCGCCAA
TCGTTAAGGTTAACAGCgGTACACCAAACGCCACTGGCAAGCCAGAAACA
CCGCCGTCATCGCTTGCTGCCACGCCAACGACGTCGACTGCGCCCAATGG
TAGGAAGAGGAAAAGGAAGGGAGCGGACCCAGCAGCGGCACCAATCATTG
AGGCAGACAGCGGCACAGCGACGGCCATTGACCTCGAGAATACGTCTGTA
G
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