mRNA_P-littoralis_Contig1224.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1224.8.1
Unique NamemRNA_P-littoralis_Contig1224.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1224.8.1 vs. uniprot
Match: A0A6H5KH61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH61_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.520e-42
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = 1
Query:  139 MAELPTPDADG*VGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVGGRYCRHVEEPPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQ 489
            M +LPTPD +  VGGN QAC+ Q ++ + A  +  ++ +D+ RAFAFE+ S+VG RYC H+  P  LEDMS AK+KKAAA+HPGLCGV+HA +IA V+TQDV +KW  TT NKYRNQ
Sbjct:    1 MEDLPTPDIEAYVGGNQQACYVQLVDVLSALPAGEEN-TDVGRAFAFEVPSKVGARYCSHLSAPEPLEDMSHAKRKKAAADHPGLCGVYHAHIIAAVRTQDVAEKWNQTTGNKYRNQ 116          
BLAST of mRNA_P-littoralis_Contig1224.8.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.130e-36
Identity = 59/115 (51.30%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  145 ELPTPDADG*VGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVGGRYCRHVEEPPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQ 489
            ++PTPD +G   GN+ ACH Q +  + A++ + +  S L RAFAFE+A++VG  YC H   P  +  M+LA  KKAAA HPGLCGVHHA +IA V+T+DV  + G T ANK+RNQ
Sbjct:    2 DMPTPDVEGYKAGNTMACHGQRVSLIAANTPAEEGTSTLLRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAAEHPGLCGVHHAHIIAAVRTEDVTSRSGFTAANKFRNQ 116          
BLAST of mRNA_P-littoralis_Contig1224.8.1 vs. uniprot
Match: A0A6H5KUP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP8_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.020e-36
Identity = 58/114 (50.88%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  148 LPTPDADG*VGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVGGRYCRHVEEPPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQ 489
            +PTPD +G   GN+ ACH Q +  + A++ + +  S L RAFAFE+A++VG  YC H   P  +  M+LA  KKAAA HPGLCGV+HA +IA V+T+DV  + G+T ANK+RNQ
Sbjct:    1 MPTPDVEGCKAGNTMACHEQMVSLIAANTPAEEDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSRSGSTAANKFRNQ 114          
BLAST of mRNA_P-littoralis_Contig1224.8.1 vs. uniprot
Match: A0A6H5K6B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B0_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 6.590e-34
Identity = 58/125 (46.40%), Postives = 81/125 (64.80%), Query Frame = 1
Query:  115 TNQYKLKQMAELPTPDADG*VGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVGGRYCRHVEEPPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQ 489
            + Q   K    +P P+ +G   GN+ ACH Q +  + A++ + +  S L RAFAFE+A++VG  YC H   P  +  M+LA  KKAAA HPGLCGV+HA +IA V+T+DV  + G+T ANK+RNQ
Sbjct:   59 STQKPPKLWTYMPPPNVEGCKAGNTMACHEQMVSLIAANTPAEEDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSQSGSTAANKFRNQ 183          
BLAST of mRNA_P-littoralis_Contig1224.8.1 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.280e-31
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 1
Query:  244 DSESDLYRAFAFEIASQVGGRYCRHVEEPPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQ 489
            +  +D+ RAFAFE+AS+VG RYC HV  P  LEDMS AK+KKAAA+HPGLCGV+HA +IA V+TQDV +KW  TT NKYRNQ
Sbjct:  104 EENTDVGRAFAFEVASKVGARYCSHVSAPEPLEDMSHAKRKKAAADHPGLCGVYHAHIIAAVRTQDVAEKWNQTTGNKYRNQ 185          
BLAST of mRNA_P-littoralis_Contig1224.8.1 vs. uniprot
Match: A0A6H5KQB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB2_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.630e-27
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 1
Query:  145 ELPTPDADG*VGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVGGRYCRHVEEPPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQ 489
            ELP PD +    GN++              S   + ++L RAFAFEIA+ VGG YC H+ EP  +  M+ +  K AAA HPGLCGV+HA ++A VKTQDV  + G+T  NKYRNQ
Sbjct:    2 ELPAPDVEAYKAGNTRPATIMVSLIANNPPSEDGTNNNLARAFAFEIAAAVGGEYCDHLTEPEPMPSMAPSAAKVAAAEHPGLCGVYHAHILAAVKTQDVQARSGSTAGNKYRNQ 116          
BLAST of mRNA_P-littoralis_Contig1224.8.1 vs. uniprot
Match: A0A6H5JAI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAI4_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.140e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query:  337 LEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQ 489
            +  M+LA  KKAAA HPGLCGV+HA +IA V+T+DV  + G+T ANK+RNQ
Sbjct:    1 MPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSRSGSTAANKFRNQ 51          
BLAST of mRNA_P-littoralis_Contig1224.8.1 vs. uniprot
Match: A0A6H5KUN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUN4_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.170e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 1
Query:  337 LEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQ 489
            +  M +A  K AAA HPGLCGV+HA +IA VK+QDV+ + G+T ANKYRNQ
Sbjct:    1 MPSMKVAAAKVAAAEHPGLCGVYHAHIIAVVKSQDVLARSGSTAANKYRNQ 51          
BLAST of mRNA_P-littoralis_Contig1224.8.1 vs. uniprot
Match: A0A6H5K6T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T9_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.870e-11
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1
Query:  337 LEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQ 489
            +  M  A  K AAA HPGLCGV+HA +IA VK QDV+ + G+T ANKYRNQ
Sbjct:    1 MPSMKAAAAKVAAAEHPGLCGVYHAHIIAAVKIQDVLARSGSTAANKYRNQ 51          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1224.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KH61_9PHAE3.520e-4258.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXX9_9PHAE2.130e-3651.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUP8_9PHAE3.020e-3650.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6B0_9PHAE6.590e-3446.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH50_9PHAE2.280e-3167.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB2_9PHAE2.630e-2746.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAI4_9PHAE1.140e-1260.78Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUN4_9PHAE1.170e-1160.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T9_9PHAE2.870e-1160.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1224contigP-littoralis_Contig1224:53004..53493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size490
Hectar predicted targeting categorysignal peptide
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789530.9100826-UTR-P-littoralis_Contig1224:53003..530231680789530.9100826-UTR-P-littoralis_Contig1224:53003..53023Pylaiella littoralis U1_48UTRP-littoralis_Contig1224 53004..53023 +
1680789530.9336603-UTR-P-littoralis_Contig1224:53344..534931680789530.9336603-UTR-P-littoralis_Contig1224:53344..53493Pylaiella littoralis U1_48UTRP-littoralis_Contig1224 53345..53493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789530.9243212-CDS-P-littoralis_Contig1224:53023..533441680789530.9243212-CDS-P-littoralis_Contig1224:53023..53344Pylaiella littoralis U1_48CDSP-littoralis_Contig1224 53024..53344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1224.8.1prot_P-littoralis_Contig1224.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1224 53024..53344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1224.8.1

>prot_P-littoralis_Contig1224.8.1 ID=prot_P-littoralis_Contig1224.8.1|Name=mRNA_P-littoralis_Contig1224.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
MHFCFIFIFMWAGTSVLLLRPAAALQSNPNPNKPIQAQTNGRATHARRRW
LSGRQLPGLPRPIHRVRGSGLLVEGQRERPLSSVCVRDCQPSWRALLPPC
RGTARP*
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mRNA from alignment at P-littoralis_Contig1224:53004..53493+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1224.8.1 ID=mRNA_P-littoralis_Contig1224.8.1|Name=mRNA_P-littoralis_Contig1224.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=490bp|location=Sequence derived from alignment at P-littoralis_Contig1224:53004..53493+ (Pylaiella littoralis U1_48)
TGTAGCTCCGCTACCACGATATGCACTTCTGTTTTATTTTTATTTTCATG TGGGCTGGTACGTCGGTGCTGCTGCTGCGGCCTGCGGCCGCTCTCCAGTC CAACCCTAACCCAAACAAACCAATACAAGCTCAAACAAATGGCCGAGCTA CCCACGCCCGACGCCGATGGCTAAGTGGGCGGCAACTCCCAGGCTTGCCA CGCCCAATTCATAGAGTTCGTGGAAGCGGACTCCTCGTCGAGGGACAGCG AGAGCGACCTCTATCGAGCGTTTGCGTTCGAGATTGCCAGCCAAGTTGGC GGGCGCTACTGCCGCCATGTCGAGGAACCGCCCGCCCTTGAAGACATGAG CCTCGCCAAGAAGAAGAAGGCAGCTGCGAACCACCCGGGCCTATGCGGTG TTCACCATGCCGCTGTCATCGCTGGGGTGAAAACGCAAGATGTGGTGGAC AAATGGGGAACAACCACGGCTAACAAGTACAGAAACCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1224:53004..53493+

>mRNA_P-littoralis_Contig1224.8.1 ID=mRNA_P-littoralis_Contig1224.8.1|Name=mRNA_P-littoralis_Contig1224.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig1224:53004..53493+ (Pylaiella littoralis U1_48)
ATGCACTTCTGTTTTATTTTTATTTTCATGTGGGCTGGTACGTCGGTGCT
GCTGCTGCGGCCTGCGGCCGCTCTCCAGTCCAACCCTAACCCAAACAAAC
CAATACAAGCTCAAACAAATGGCCGAGCTACCCACGCCCGACGCCGATGG
CTAAGTGGGCGGCAACTCCCAGGCTTGCCACGCCCAATTCATAGAGTTCG
TGGAAGCGGACTCCTCGTCGAGGGACAGCGAGAGCGACCTCTATCGAGCG
TTTGCGTTCGAGATTGCCAGCCAAGTTGGCGGGCGCTACTGCCGCCATGT
CGAGGAACCGCCCGCCCTTGA
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