mRNA_P-littoralis_Contig1224.5.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI) HSP 1 Score: 248 bits (634), Expect = 4.510e-79 Identity = 136/271 (50.18%), Postives = 173/271 (63.84%), Query Frame = 1
Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP-------GQALSACTQCAQCSGT--KKDNSTQGEEQN------SSEDREEFDAGFMFTATRDARTFVPDAEGVTLLIDSGATETFLDDQLIPGLKDRM 768
ME+L +T MEPGQNPDDYFN KHLLRH+ EKMGE +SDR+FKD+CVTGFT +YK+VKM+M+RDP F+++ MQ+TM HM +DEQSR GSKG +AGRG M S C C E+GH + C Q + ++ K PA G+ KWC H T ++D+ECY QG KRP +A SAC CA S T +K+ +T E + SS D +E D GFM+ TR +AEGVTLL++ GATET DD+LIP LKD +
Sbjct: 1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQETCFGCGEKGHIRRNCLQRRGK---GRQRKTKPA------GATKWCCFHFTTKNSDEECYGQGAKRPITDQISTDKAFSACAHCAHFSSTSDRKELTTAKEASSTKAAIDSSTDGDESDEGFMYATTRTGMEVEANAEGVTLLVEIGATETMRDDRLIPHLKDNV 262
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE) HSP 1 Score: 252 bits (643), Expect = 1.030e-75 Identity = 133/260 (51.15%), Postives = 176/260 (67.69%), Query Frame = 1
Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP------GQALSACTQCAQCSGTKKDNSTQGEEQ--NSSEDREEFDAGFMF-TATR-DARTFVPDAEGVTLLIDSGATETFLDDQLIP 750
MEEL + PM PG+NPDDYFNQKHLLR + +KMGE +SDR FKDICV GF+D+YKDVK++++RDPTF++ M STMR++F+DEQSR G KGR+AGRG AM T+ DIICH C E GH + CP++K+ K K PA G+ KWCS H T +H+D+ECY+QGGKRP + +AC+ C CS K + + E + + D + FD+GFMF T +R R F + GV L++DS A+ET D++LIP
Sbjct: 156 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMAT-TASDIICHSCYEPGHIRRNCPKIKNRAK----KKTKPA------GATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKKDDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIP 404
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE) HSP 1 Score: 247 bits (630), Expect = 1.710e-73 Identity = 134/271 (49.45%), Postives = 174/271 (64.21%), Query Frame = 1
Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKDN--------------STQGEEQNSSEDREEFDAGFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 753
+++L T MEPG+NPDD+FN+KH LR + EKMGET+SDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R +KG++AGRG AM TS I C C E GH + CP + AK++K PA G+ KWCSVH T TH+D+ECY QG KRP G+A SACT C CS +D T+ E + S D + F GFM+ AT RTF A G + L+DSGA+ET DD+LIP
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTK--PA------GATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN 397
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE) HSP 1 Score: 238 bits (607), Expect = 5.310e-72 Identity = 129/262 (49.24%), Postives = 176/262 (67.18%), Query Frame = 1
Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQ--GGKRP------GQALSACTQCAQCSGT--KKDNSTQGEEQNSSEDREEFDAGFMF-TATR-DARTFVPDAEGVTLLIDSGATETFLDDQLIP 750
MEEL + PM PG+NPDDYFNQKH L + +KMGE +SDR FKDICV GF+D+Y+DVK++++RDPTF++ MQSTMR++++DEQSR G KGR+AGRG AM T+ DIICH C E GH + CP++K+ K K PA G+ KWCS H T +H+D+ECY+Q GGK P +A + C+ C CS T K D++ + + + D + FD+GFMF T +R R F + GV LL+D+GA+ T D++L+P
Sbjct: 1 MEELENNPMNPGENPDDYFNQKHPLCVQLDKMGEPISDRRFKDICVQGFSDEYEDVKLMLFRDPTFNVLDMQSTMRNIYLDEQSRKGWKGRIAGRGFAMAT-TASDIICHSCYEPGHIRRNCPKIKNRAK----KKTKPA------GATKWCSKHNTTSHSDEECYQQXQGGKCPEDTKDSSKAFTPCSDCTHCSSTCNKHDSNNEVTVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASATMFDNRLMP 251
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE) HSP 1 Score: 247 bits (630), Expect = 9.500e-72 Identity = 134/271 (49.45%), Postives = 174/271 (64.21%), Query Frame = 1
Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKD--------------NSTQGEEQNSSEDREEFDAGFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 753
+++L T MEPG+NPDD+FN+KH LR + EKMGET+SDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R +KG++AGRG AM TS I C C E GH + CP + AK++K PA G+ KWCSVH T TH+D+ECY QG KRP G+A SACT C CS +D T+ E + S D + F GFM+ AT RTF A G + L+DSGA+ET DD+LIP
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTK--PA------GATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN 397
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE) HSP 1 Score: 245 bits (625), Expect = 3.640e-71 Identity = 133/271 (49.08%), Postives = 174/271 (64.21%), Query Frame = 1
Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKD--------------NSTQGEEQNSSEDREEFDAGFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 753
+++L T MEPG+NPDD+FN+KH LR + EKMGET+SDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R +KG++AGRG AM TS I C C E GH + CP + AK++K PA G+ KWCSVH T TH+D+ECY QG KRP G+A SACT C CS +D T+ E + S D + F GFM+ AT RTF A G + L+DSGA+ET D++LIP
Sbjct: 155 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTK--PA------GATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 416
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE) HSP 1 Score: 245 bits (625), Expect = 4.920e-71 Identity = 133/271 (49.08%), Postives = 174/271 (64.21%), Query Frame = 1
Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKD--------------NSTQGEEQNSSEDREEFDAGFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 753
+++L T MEPG+NPDD+FN+KH LR + EKMGET+SDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R +KG++AGRG AM TS I C C E GH + CP + AK++K PA G+ KWCSVH T TH+D+ECY QG KRP G+A SACT C CS +D T+ E + S D + F GFM+ AT RTF A G + L+DSGA+ET D++LIP
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTK--PA------GATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE) HSP 1 Score: 231 bits (589), Expect = 6.380e-71 Identity = 127/261 (48.66%), Postives = 173/261 (66.28%), Query Frame = 1
Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHM-FIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP------GQALSACTQCAQCSGT--KKDNSTQGEEQNSSEDREEFDAGFMF-TATR-DARTFVPDAEGVTLLIDSGATETFLDDQLIP 750
MEEL + PM PG+NPDDYFNQKHL+R + +KMGE +SDR KDI V GF+D+Y+DVK++++RDPTF+ MQST+R+ + +EQSR G KGR+AGRG AM T+ DIICH C E GH + CP++K+ K K PA G+ KWC H T +H+D+ECY+QGGKRP +A +AC+ C CS K D++ + + + D + FD+GFMF T +R R F + G LL+D+GA+ET D++LIP
Sbjct: 96 MEELENNPMNPGENPDDYFNQKHLIRAQLDKMGEPISDRRCKDIWVQGFSDEYRDVKLMVFRDPTFNALGMQSTIRNTSWTNEQSRKGWKGRIAGRGFAMAT-TASDIICHSCYEPGHIRRNCPKIKNRAK----KKTKPA------GATKWCCKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSDCTHCSSAPNKNDSNNEVAVADFTRDEDAFDSGFMFGTCSRISERNFAASSTGSILLVDTGASETMFDNRLIP 345
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE) HSP 1 Score: 245 bits (625), Expect = 1.390e-70 Identity = 133/271 (49.08%), Postives = 174/271 (64.21%), Query Frame = 1
Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKDN--------------STQGEEQNSSEDREEFDAGFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 753
+++L T MEPG+NPDD+FN+KH LR + EKMGET+SDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R +KG++AGRG AM TS I C C E GH + CP + AK++K PA G+ KWCSVH T TH+D+ECY QG KRP G+A SACT C CS +D T+ E + S D + F GFM+ AT RTF A G + L+DSGA+ET D++LIP
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTK--PA------GATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 245 bits (625), Expect = 1.400e-70 Identity = 133/271 (49.08%), Postives = 174/271 (64.21%), Query Frame = 1
Query: 1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKD--------------NSTQGEEQNSSEDREEFDAGFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 753
+++L T MEPG+NPDD+FN+KH LR + EKMGET+SDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R +KG++AGRG AM TS I C C E GH + CP + AK++K PA G+ KWCSVH T TH+D+ECY QG KRP G+A SACT C CS +D T+ E + S D + F GFM+ AT RTF A G + L+DSGA+ET D++LIP
Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTK--PA------GATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1224.5.1 >prot_P-littoralis_Contig1224.5.1 ID=prot_P-littoralis_Contig1224.5.1|Name=mRNA_P-littoralis_Contig1224.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=256bp MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTback to top mRNA from alignment at P-littoralis_Contig1224:48019..48803- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1224.5.1 ID=mRNA_P-littoralis_Contig1224.5.1|Name=mRNA_P-littoralis_Contig1224.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=785bp|location=Sequence derived from alignment at P-littoralis_Contig1224:48019..48803- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1224:48019..48803- >mRNA_P-littoralis_Contig1224.5.1 ID=mRNA_P-littoralis_Contig1224.5.1|Name=mRNA_P-littoralis_Contig1224.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=768bp|location=Sequence derived from alignment at P-littoralis_Contig1224:48019..48803- (Pylaiella littoralis U1_48)back to top |