mRNA_P-littoralis_Contig1224.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1224.5.1
Unique NamemRNA_P-littoralis_Contig1224.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 4.510e-79
Identity = 136/271 (50.18%), Postives = 173/271 (63.84%), Query Frame = 1
Query:    1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP-------GQALSACTQCAQCSGT--KKDNSTQGEEQN------SSEDREEFDAGFMFTATRDARTFVPDAEGVTLLIDSGATETFLDDQLIPGLKDRM 768
            ME+L +T MEPGQNPDDYFN KHLLRH+ EKMGE +SDR+FKD+CVTGFT +YK+VKM+M+RDP F+++ MQ+TM HM +DEQSR GSKG +AGRG  M    S    C  C E+GH +  C Q +      ++ K  PA      G+ KWC  H T  ++D+ECY QG KRP        +A SAC  CA  S T  +K+ +T  E  +      SS D +E D GFM+  TR       +AEGVTLL++ GATET  DD+LIP LKD +
Sbjct:    1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQETCFGCGEKGHIRRNCLQRRGK---GRQRKTKPA------GATKWCCFHFTTKNSDEECYGQGAKRPITDQISTDKAFSACAHCAHFSSTSDRKELTTAKEASSTKAAIDSSTDGDESDEGFMYATTRTGMEVEANAEGVTLLVEIGATETMRDDRLIPHLKDNV 262          
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 1.030e-75
Identity = 133/260 (51.15%), Postives = 176/260 (67.69%), Query Frame = 1
Query:    1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP------GQALSACTQCAQCSGTKKDNSTQGEEQ--NSSEDREEFDAGFMF-TATR-DARTFVPDAEGVTLLIDSGATETFLDDQLIP 750
            MEEL + PM PG+NPDDYFNQKHLLR + +KMGE +SDR FKDICV GF+D+YKDVK++++RDPTF++  M STMR++F+DEQSR G KGR+AGRG AM   T+ DIICH C E GH +  CP++K+  K     K  PA      G+ KWCS H T +H+D+ECY+QGGKRP       +  +AC+ C  CS   K + +  E    + + D + FD+GFMF T +R   R F   + GV L++DS A+ET  D++LIP
Sbjct:  156 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMAT-TASDIICHSCYEPGHIRRNCPKIKNRAK----KKTKPA------GATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKKDDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIP 404          
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 1.710e-73
Identity = 134/271 (49.45%), Postives = 174/271 (64.21%), Query Frame = 1
Query:    1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKDN--------------STQGEEQNSSEDREEFDAGFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 753
            +++L  T MEPG+NPDD+FN+KH LR + EKMGET+SDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R  +KG++AGRG AM   TS  I C  C E GH +  CP  +     AK++K  PA      G+ KWCSVH T TH+D+ECY QG KRP   G+A SACT C  CS   +D                T+  E + S D + F  GFM+ AT      RTF   A G + L+DSGA+ET  DD+LIP 
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTK--PA------GATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN 397          
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 5.310e-72
Identity = 129/262 (49.24%), Postives = 176/262 (67.18%), Query Frame = 1
Query:    1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQ--GGKRP------GQALSACTQCAQCSGT--KKDNSTQGEEQNSSEDREEFDAGFMF-TATR-DARTFVPDAEGVTLLIDSGATETFLDDQLIP 750
            MEEL + PM PG+NPDDYFNQKH L  + +KMGE +SDR FKDICV GF+D+Y+DVK++++RDPTF++  MQSTMR++++DEQSR G KGR+AGRG AM   T+ DIICH C E GH +  CP++K+  K     K  PA      G+ KWCS H T +H+D+ECY+Q  GGK P       +A + C+ C  CS T  K D++ +    + + D + FD+GFMF T +R   R F   + GV LL+D+GA+ T  D++L+P
Sbjct:    1 MEELENNPMNPGENPDDYFNQKHPLCVQLDKMGEPISDRRFKDICVQGFSDEYEDVKLMLFRDPTFNVLDMQSTMRNIYLDEQSRKGWKGRIAGRGFAMAT-TASDIICHSCYEPGHIRRNCPKIKNRAK----KKTKPA------GATKWCSKHNTTSHSDEECYQQXQGGKCPEDTKDSSKAFTPCSDCTHCSSTCNKHDSNNEVTVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASATMFDNRLMP 251          
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 9.500e-72
Identity = 134/271 (49.45%), Postives = 174/271 (64.21%), Query Frame = 1
Query:    1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKD--------------NSTQGEEQNSSEDREEFDAGFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 753
            +++L  T MEPG+NPDD+FN+KH LR + EKMGET+SDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R  +KG++AGRG AM   TS  I C  C E GH +  CP  +     AK++K  PA      G+ KWCSVH T TH+D+ECY QG KRP   G+A SACT C  CS   +D                T+  E + S D + F  GFM+ AT      RTF   A G + L+DSGA+ET  DD+LIP 
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTK--PA------GATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN 397          
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 3.640e-71
Identity = 133/271 (49.08%), Postives = 174/271 (64.21%), Query Frame = 1
Query:    1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKD--------------NSTQGEEQNSSEDREEFDAGFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 753
            +++L  T MEPG+NPDD+FN+KH LR + EKMGET+SDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R  +KG++AGRG AM   TS  I C  C E GH +  CP  +     AK++K  PA      G+ KWCSVH T TH+D+ECY QG KRP   G+A SACT C  CS   +D                T+  E + S D + F  GFM+ AT      RTF   A G + L+DSGA+ET  D++LIP 
Sbjct:  155 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTK--PA------GATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 416          
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 4.920e-71
Identity = 133/271 (49.08%), Postives = 174/271 (64.21%), Query Frame = 1
Query:    1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKD--------------NSTQGEEQNSSEDREEFDAGFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 753
            +++L  T MEPG+NPDD+FN+KH LR + EKMGET+SDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R  +KG++AGRG AM   TS  I C  C E GH +  CP  +     AK++K  PA      G+ KWCSVH T TH+D+ECY QG KRP   G+A SACT C  CS   +D                T+  E + S D + F  GFM+ AT      RTF   A G + L+DSGA+ET  D++LIP 
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTK--PA------GATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397          
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 6.380e-71
Identity = 127/261 (48.66%), Postives = 173/261 (66.28%), Query Frame = 1
Query:    1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHM-FIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP------GQALSACTQCAQCSGT--KKDNSTQGEEQNSSEDREEFDAGFMF-TATR-DARTFVPDAEGVTLLIDSGATETFLDDQLIP 750
            MEEL + PM PG+NPDDYFNQKHL+R + +KMGE +SDR  KDI V GF+D+Y+DVK++++RDPTF+   MQST+R+  + +EQSR G KGR+AGRG AM   T+ DIICH C E GH +  CP++K+  K     K  PA      G+ KWC  H T +H+D+ECY+QGGKRP       +A +AC+ C  CS    K D++ +    + + D + FD+GFMF T +R   R F   + G  LL+D+GA+ET  D++LIP
Sbjct:   96 MEELENNPMNPGENPDDYFNQKHLIRAQLDKMGEPISDRRCKDIWVQGFSDEYRDVKLMVFRDPTFNALGMQSTIRNTSWTNEQSRKGWKGRIAGRGFAMAT-TASDIICHSCYEPGHIRRNCPKIKNRAK----KKTKPA------GATKWCCKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSDCTHCSSAPNKNDSNNEVAVADFTRDEDAFDSGFMFGTCSRISERNFAASSTGSILLVDTGASETMFDNRLIP 345          
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 1.390e-70
Identity = 133/271 (49.08%), Postives = 174/271 (64.21%), Query Frame = 1
Query:    1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKDN--------------STQGEEQNSSEDREEFDAGFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 753
            +++L  T MEPG+NPDD+FN+KH LR + EKMGET+SDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R  +KG++AGRG AM   TS  I C  C E GH +  CP  +     AK++K  PA      G+ KWCSVH T TH+D+ECY QG KRP   G+A SACT C  CS   +D                T+  E + S D + F  GFM+ AT      RTF   A G + L+DSGA+ET  D++LIP 
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTK--PA------GATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397          
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 1.400e-70
Identity = 133/271 (49.08%), Postives = 174/271 (64.21%), Query Frame = 1
Query:    1 MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMTIATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRKWCSVHRTGTHNDDECYEQGGKRP---GQALSACTQCAQCSGTKKD--------------NSTQGEEQNSSEDREEFDAGFMFTAT---RDARTFVPDAEGVTLLIDSGATETFLDDQLIPG 753
            +++L  T MEPG+NPDD+FN+KH LR + EKMGET+SDR FKDICV GF++DYKD+KM+++RDP+FD+ QMQ+TMR++F+DEQ R  +KG++AGRG AM   TS  I C  C E GH +  CP  +     AK++K  PA      G+ KWCSVH T TH+D+ECY QG KRP   G+A SACT C  CS   +D                T+  E + S D + F  GFM+ AT      RTF   A G + L+DSGA+ET  D++LIP 
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPI-CFECNEPGHVRRNCPNRQREGHRAKKTK--PA------GATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1224.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Q1_ECTSI4.510e-7950.18CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L580_9PHAE1.030e-7551.15CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJB9_9PHAE1.710e-7349.45Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5JZ53_9PHAE5.310e-7249.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3T5_9PHAE9.500e-7249.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN9_9PHAE3.640e-7149.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1Z9_9PHAE4.920e-7149.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXR7_9PHAE6.380e-7148.66CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JTQ0_9PHAE1.390e-7049.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG5_9PHAE1.400e-7049.08Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1224contigP-littoralis_Contig1224:48019..48803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size768
Hectar predicted targeting categoryother localisation
Exons2
Cds size768
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.0246875-CDS-P-littoralis_Contig1224:48018..483631680789531.0246875-CDS-P-littoralis_Contig1224:48018..48363Pylaiella littoralis U1_48CDSP-littoralis_Contig1224 48019..48363 -
1680789531.03517-CDS-P-littoralis_Contig1224:48380..488031680789531.03517-CDS-P-littoralis_Contig1224:48380..48803Pylaiella littoralis U1_48CDSP-littoralis_Contig1224 48381..48803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1224.5.1prot_P-littoralis_Contig1224.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1224 48019..48803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1224.5.1

>prot_P-littoralis_Contig1224.5.1 ID=prot_P-littoralis_Contig1224.5.1|Name=mRNA_P-littoralis_Contig1224.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=256bp
MEELVSTPMEPGQNPDDYFNQKHLLRHRAEKMGETVSDRWFKDICVTGFT
DDYKDVKMLMYRDPTFDIDQMQSTMRHMFIDEQSRNGSKGRVAGRGIAMT
IATSPDIICHICKERGHKKWRCPQLKDAEKDAKESKENPAEGKSGGGSRK
WCSVHRTGTHNDDECYEQGGKRPGQALSACTQCAQCSGTKKDNSTQGEEQ
NSSEDREEFDAGFMFTATRDARTFVPDAEGVTLLIDSGATETFLDDQLIP
GLKDRM
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mRNA from alignment at P-littoralis_Contig1224:48019..48803-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1224.5.1 ID=mRNA_P-littoralis_Contig1224.5.1|Name=mRNA_P-littoralis_Contig1224.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=785bp|location=Sequence derived from alignment at P-littoralis_Contig1224:48019..48803- (Pylaiella littoralis U1_48)
ATGGAGGAGCTCGTGAGTACACCAATGGAACCTGGGCAGAACCCAGACGA CTACTTCAACCAGAAACACCTGCTTCGTCACCGGGCCGAGAAAATGGGGG AAACGGTCTCCGACCGTTGGTTCAAGGACATCTGCGTCACAGGGTTCACC GACGACTACAAGGACGTCAAAATGCTGATGTACCGTGACCCTACTTTCGA CATCGACCAGATGCAGTCCACCATGCGTCATATGTTCATCGATGAGCAAT CACGCAACGGAAGCAAGGGGCGGGTCGCTGGCCGTGGCATCGCCATGACA ATTGCGACATCGCCGGACATCATCTGTCACATCTGTAAGGAGCGAGGACA CAAGAAATGGCGCTGCCCCCAACTTAAAGACGCCGAAAAGGATGCCAAAG AAAGCAAGGAAAACCCGGCGGAGGTTTCGGGGAACGCGAGGGCAAATCCG GAGGAGGTTCCCGGAAATGGTGCTCCGTTCACCGCACCGGTACCCACAAC GACGACGAGTGCTACGAACAAGGAGGGAAGCGACCCGGACAGGCTCTCTC TGCATGTACACAGTGCGCGCAGTGCTCCGGCACTAAAAAGGACAACAGCA CTCAAGGGGAGGAGCAAAACTCTTCTGAGGACAGGGAGGAGTTCGACGCA GGATTTATGTTCACCGCTACTAGAGATGCGAGGACGTTTGTACCTGATGC CGAAGGAGTCACACTGCTGATCGACAGCGGCGCTACGGAGACCTTCCTTG ATGATCAACTCATCCCCGGCCTGAAGGACCGAATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1224:48019..48803-

>mRNA_P-littoralis_Contig1224.5.1 ID=mRNA_P-littoralis_Contig1224.5.1|Name=mRNA_P-littoralis_Contig1224.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=768bp|location=Sequence derived from alignment at P-littoralis_Contig1224:48019..48803- (Pylaiella littoralis U1_48)
ATGGAGGAGCTCGTGAGTACACCAATGGAACCTGGGCAGAACCCAGACGA
CTACTTCAACCAGAAACACCTGCTTCGTCACCGGGCCGAGAAAATGGGGG
AAACGGTCTCCGACCGTTGGTTCAAGGACATCTGCGTCACAGGGTTCACC
GACGACTACAAGGACGTCAAAATGCTGATGTACCGTGACCCTACTTTCGA
CATCGACCAGATGCAGTCCACCATGCGTCATATGTTCATCGATGAGCAAT
CACGCAACGGAAGCAAGGGGCGGGTCGCTGGCCGTGGCATCGCCATGACA
ATTGCGACATCGCCGGACATCATCTGTCACATCTGTAAGGAGCGAGGACA
CAAGAAATGGCGCTGCCCCCAACTTAAAGACGCCGAAAAGGATGCCAAAG
AAAGCAAGGAAAACCCGGCGGAGGGCAAATCCGGAGGAGGTTCCCGGAAA
TGGTGCTCCGTTCACCGCACCGGTACCCACAACGACGACGAGTGCTACGA
ACAAGGAGGGAAGCGACCCGGACAGGCTCTCTCTGCATGTACACAGTGCG
CGCAGTGCTCCGGCACTAAAAAGGACAACAGCACTCAAGGGGAGGAGCAA
AACTCTTCTGAGGACAGGGAGGAGTTCGACGCAGGATTTATGTTCACCGC
TACTAGAGATGCGAGGACGTTTGTACCTGATGCCGAAGGAGTCACACTGC
TGATCGACAGCGGCGCTACGGAGACCTTCCTTGATGATCAACTCATCCCC
GGCCTGAAGGACCGAATG
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