mRNA_P-littoralis_Contig1224.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1224.4.1
Unique NamemRNA_P-littoralis_Contig1224.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.300e-43
Identity = 129/420 (30.71%), Postives = 181/420 (43.10%), Query Frame = 1
Query:  919 LTVWAVACWSGYCFTAYTDGGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFAVGTLRENHRRSKEAIQI*SLTNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITP-----------------EHFIPRVYSKYVA-------------EKDGKEGGF----QPWCRLHYNKVMDGVDKADQHNGMYQPRHRANNYFWRRVFEQKLMQVCTNAWLLFRWWLDDVQSKLKAEIDRLKAGGAAERDGTADGLLVGQLKEESKAFEALTKQSRAQWMRALSVHLMSSSRLGNLVRGRRVLGKFGPIRTLKQRSADRTPLARLDGQRFTCEAKNCSACLSTKRNRKYTRGKKVGTACRCKVCKKVANGGVAMSHECYNTPTKH 2076
            + ++A+     YCF +  DGG  GDP LR W +CPLGRT R V+ VL   CK+ G+++  SG + A DNYF SP LF CL    +FAVGT R N  R+  A+      ++   ++G+M FAR G + F  W DSK +   S IHI                   +HF P  Y  +V               K G+ G      QPW R  Y   M GV+ ADQ N  +   H++    WRRV E K  +  TN  ++F+ ++    S L+ + ++   GG  E +      +V +L         L K  RA W   LS  LM+   +G   +G R     G                  D    +   K    C+      K ++G      C   V K+  + GV M   C+N P KH
Sbjct:    1 MKLFAICDIERYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVYIAMDNYFTSPTLFECLASHDIFAVGTCRSN--RTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDSDGGDDHFAPLPYRCFVCPLPSRPHPFMFSLRKAGQAGKSLELQQPWMRKDYVANMGGVETADQQNVSHTHDHKSYTNHWRRVIEGKFERRFTNIVVMFKKYV----SLLEDQANKRIKGGGLELE------VVEKLDRVLVELGRLAKMERAVWDEMLSTELMARCNVGRPNKGGRPAAVTGAP----------------DKVWGSISVKTQRKCMHPGCKSKTSKGCACAELC---VGKQAGDRGVLMCQACFNNPVKH 389          
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 9.410e-42
Identity = 130/412 (31.55%), Postives = 192/412 (46.60%), Query Frame = 1
Query:  946 SGYCFTAYTDGGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFAVGTLRENHRRSKEAIQI*SLTNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITP-----------EHFIPRVYSKYVAEKDGKEGGFQ-PWCRLHYNKVMDGVDKADQHNGMYQPRHRANNYFWRRVFEQKLMQVCTNAWLLFRWWLDDVQSKLKAEIDRLKAGGAAERDGTADGLLVGQLKEESKAFEALTKQSRAQWMRALSVHLMSSSRLGNLVRGRRVLGKFGPIRTLKQRSADRTPLARLDGQRFTCEAKNCSACLSTKRNRKYTRGKKVGTACRCK-VCKKVANGGVAMSHECYNTPTKHKVGVEVGSD---DRQKAAGVEW 2133
            + YC T+  DGG  GDP LR + +CPLGRT R V+ VL   C  L +++  SG   A DNYF SP LF CL    +FAVGT R +     +A  + SL  + +  +GDM F R G +    W DSK +  +S IH+             +HF P   S     ++G+    Q P+ R+ Y   M GVD ADQ NG +   H++   FWRRV++ KL Q  TNA+L+FR W++ +  +++A+   +  GG  E           +L+  S     L+K  RA W   ++  LM+     N+ R         P +  K+ ++D  P   + G   +   K+   CL+        +G      C CK  C      GV M   C+ +P  H+   +   D   + +   G EW
Sbjct:  437 TSYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTAGADAY-LESL-GRTIPNRGDMNFCRSGQVACVQWADSKDIFLISTIHVAQPAKGKEEAGGIDHFKPLPLSLRAKGRNGEPLDLQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRKWVELLIREVEAK-KPIAPGGELE-----------ELELASTELATLSKVERAVWDEQMATLLMAEC---NVAR---------PNKGGKRPASDNKPADPVWG---SVTLKSGRLCLNPTCKTTSMKG------CSCKQFCTWGDKAGVLMCETCWKSPESHEQAAKAYWDSVSEGRNRTGFEW 813          
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.100e-41
Identity = 133/430 (30.93%), Postives = 185/430 (43.02%), Query Frame = 1
Query:  916 GLTVWAVACWSGYCFTAYTDGGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFAVGTLRENHRRSKEAIQI*SLTNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITP-----------------EHFIPRVYSKYVA-------------EKDGKEGGF----QPWCRLHYNKVMDGVDKADQHNGMYQPRHRANNYFWRRVFEQKLMQVCTNAWLLFRWWLDDVQSKLKAEIDRLKAGGAAERDGTADGLLVGQLKEESKAFEALTKQSRAQWMRALSVHLMSSSRLGNLVRGRR---VLGK----FGPIRTLKQRSADRTPLARLDGQRFTCEAKNCSACLSTKRNRKYTRGKKVGTACRCKVC--KKVANGGVAMSHECYNTPTKH 2076
            G+ ++A+    GYCF +  DGG  GDP LR W +CPLGRT R V+ VL   CK+ G+++  SG H A  N F SP LF CL    +FAVGT R N  R+  A+      ++   ++G+M FAR G + F  W DSK +   S IHI                   +HF P  Y  +V               K G+ G      QPW R  Y   M GV+ AD+ NG +   H +    WR V E K  Q  TN +++F+ ++    S L+ + ++   GG  E +      +V +L         L K  RA W   LS  LM+   +G    G R   V G     +G I    QR                C++K    C                 AC  ++C  K+  + GV M   C+N P +H
Sbjct:  775 GMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVHIAMSNNFTSPTLFECLASHDIFAVGTCRSN--RTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDDDGGDDHFAPLPYRCFVCIPPSRPHPFMFSLRKAGQAGKSLELQQPWMRKDYVANMGGVNTADRQNGSHTHDHESYTNHWRGVMEGKFKQTFTNIFVMFKKYV----SLLEGQANKRIEGGGVELE------VVEKLDRLLVELGRLAKMERAVWDEMLSTELMARCNVGRPNNGGRPAEVTGAPDKVWGSISVKTQRKC----------MHPGCKSKTWKGC-----------------AC-AELCVGKQAGDRGVLMCQACFNNPVRH 1164          
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.490e-39
Identity = 98/260 (37.69%), Postives = 130/260 (50.00%), Query Frame = 1
Query:  916 GLTVWAVACWSGYCFTAYTDGGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFAVGTLRENHRRSKEAIQI*SLTNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITP-----------------EHFIPRVYSKYVA-------------EKDGKEGGF----QPWCRLHYNKVMDGVDKADQHNGMYQPRHRANNYFWRRVFEQKLMQVCTNAWLLFR 1593
            G+ ++A+    GYCF +  DGG  GDP LR W +CPLGRT R V+ VL   CK+ G+++  SG + A DNYF SP LF CL    +FAVGT R N  R+  A+      ++   ++G+M FAR G + F  W DSK +   S IHI                   +HF P  Y  +V               K G+ G      QPW R  Y   M GVD ADQ NG +   H++    WRRV E K  Q  TN +++F+
Sbjct:  829 GMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGAYIAMDNYFKSPTLFECLASHDIFAVGTCRSN--RTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDSDGGDDHFAPLPYRCFVCPLPSRPHPFMFSLRKAGQAGKSLELQQPWMRKDYVANMGGVDTADQQNGSHTHDHKSYTNHWRRVMEGKFEQTFTNIFVMFK 1086          
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5KJJ0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ0_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.020e-23
Identity = 111/421 (26.37%), Postives = 168/421 (39.90%), Query Frame = 1
Query:  916 GLTVWAVACWSGYCFTAYTDGGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFAVGTLRENHRRSKEAIQI*SLTNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITP-----------EHFIPRVYSKYVAEKDGKEGGFQPWCRLHYNKVMDGVDKADQHNGMYQPRHRANNYFWRRVFEQKLMQVCTNAWLLFRWWLDDVQSKLKAEIDRLKAGGAAERDGTADGLLVGQLKEESKAFEALTKQSRAQWMRALSVHLMSSSRLGNLVRGRRVLGKFGPIRTLKQRSADRTPLARLDGQRFTCEAKNCSACLSTKRNRKYTRGKKVGTACRCK-VCKKVANGGVAMSHECYNTPTKHKVGVEVGSDDRQKAA---GVEW 2133
            G+ + A    +GYC T+  DGG  GDP LR + +CPLGR  R V+ VL   C  L +++  SG   A DNYF SP +F CL  + +FAVGT R +     +A  + SL  + +  +GDM   R G +    W DSK +  +S IH              +H  P   S+  A+K    GG            ++ ++ A           RA    W       LM+ C  A         +    L  E++  K          A G  + +L+  S     L+K  RA W   ++  LM+   +    +G R            + ++D  P   + G   +   K+   CL+     + T+G      C C+  C +    GV M   C+ +P  H+   +   D   K     G EW
Sbjct:  158 GMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRATRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTVFECLASYDIFAVGTCRADRTAGADAY-LESL-GRTIPNRGDMNLCRSGQVACVQWADSKGIFLISTIHFAQPAKGKEEAGGIDHIKPLPLSEVEAKKPIAPGG-----------ELEELELASTELATLSKVERA---VWDEQKATLLMEKCNVA-------RPNTVELLIREVEAKKP--------IAPGGELEELELASTELATLSKVERAVWDEQMATLLMAKCNVARPNKGGR------------RPASDNKPADPVWG---SVTLKSGRLCLNPTCKTRSTKG------CSCEQFCTRGDESGVFMCETCWKSPESHEQAAKAYWDGLSKGRNRKGFEW 526          
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.980e-23
Identity = 66/174 (37.93%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  916 GLTVWAVACWSGYCFTAYTDGGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFAVGTLRENHRRSKEAIQI*SLTNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITP-----------EHFIPRVYSKYVAEK 1404
            G+ + A    +GYC T+  DGG  GDP LR + +CPLGRT R V+ VL   C  L +++  SG   A DNYF SP LF CL    +FAVGT R +     +A  + SL  + +  +GDM F R G +    W DS  +  +S IH+             +HF P   S+  A+K
Sbjct:  144 GMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTAGADAY-LESL-GRTIPNRGDMNFCRSGQVACVQWADSNDIFLISTIHVAQPVKGKEEAGGIDHFKPLPLSEVKAKK 315          
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5JXZ2_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.130e-15
Identity = 55/150 (36.67%), Postives = 72/150 (48.00%), Query Frame = 1
Query:  976 GGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFAVGTLRENHRRSKEAIQI*SLTNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITPEHFIPRVYSKYVAEKDGKEGGF 1425
            GG  GDP LR + +CPLGRT R V+ VL   C  L +++  S    A DNYF S  LF CL    +FAVGT R +     +A        + +  +GDM F R   +    W DSK +  +S IH+          +K   E  G  GGF
Sbjct:  127 GGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSEVFIAMDNYFTSLTLFECLASHDIFAVGTCRADRTAGADAYL--ETLGRTIPNRGDMNFCRSWQVACVQWTDSKDIFLISTIHVAQP-------AKGKEEAGGIGGGF 267          
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5KMJ3_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ3_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.170e-12
Identity = 39/88 (44.32%), Postives = 50/88 (56.82%), Query Frame = 1
Query:  916 GLTVWAVACWSGYCFTAYTDGGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFA 1179
            G+ + A    + Y  T+  DGG  GDP LR + +CPLGRT R V+ VL   C  L +++  SG   A DNYF SP LF CL    +FA
Sbjct:  157 GMKLLAACDITSYSLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGLFIAMDNYFTSPTLFECLASHDIFA 244          
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5JER6_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.990e-12
Identity = 67/242 (27.69%), Postives = 108/242 (44.63%), Query Frame = 1
Query: 1360 EHFIPRVYSKYVAEKDGKEGGFQ-PWCRLHYNKVMDGVDKADQHNGMYQPRHRANNYFWRRVFEQKLMQVCTNAWLLFRWWLDDVQSKLKAEIDRLKAGGAAERDGTADGLLVGQLKEESKAFEALTKQSRAQWMRALSVHLMSSSRLGNLVRGRRVLGKFGPIRTLKQRSADRTPLARLDGQRFTCEAKNCSACLSTKRNRKYTRGKKVGTACRCK-VCKKVANGGVAMSHECYNTPTKHK 2079
            +HF P   S     ++G+    Q PW R+ Y   M GVD ADQ NG +   H++   FWRRV++ KL Q  TNA+L+FR W++ +  +++ +   +  GG  E           +L+  S     L+K  RA W   ++  LM+   +    +G R            + ++D  P   + G   +   K+   CL+     + T+G      C CK  C +    GV M   C+ +P  H+
Sbjct:  260 DHFKPLPLSLRAKGRNGEPLDLQQPWTRMDYFLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRKWVELLIREVEPK-KPITPGGELE-----------ELELASTELATLSKVERAVWDEQMATLLMAKCNVARPNKGGR------------RPASDNKPADPVWG---SVTLKSGRLCLNPTCKTRSTKG------CSCKQFCTRGDKSGVLMCETCWKSPESHE 468          
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5JIB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB8_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 8.540e-9
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 1
Query: 1240 TNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITPEHFIPR 1377
            T QYVRKKG+MV ARFG LVF  W+DSK+V+FLS +H++P+H +P+
Sbjct:  582 TRQYVRKKGEMVLARFGFLVFVQWKDSKVVKFLSTVHLSPKHVLPK 627          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KCK7_9PHAE1.300e-4330.71DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5LEE0_9PHAE9.410e-4231.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJP9_9PHAE2.100e-4130.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW40_9PHAE1.490e-3937.69HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5KJJ0_9PHAE1.020e-2326.37DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KCC7_9PHAE4.980e-2337.93DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JXZ2_9PHAE1.130e-1536.67DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KMJ3_9PHAE1.170e-1244.32DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JER6_9PHAE2.990e-1227.69DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5JIB8_9PHAE8.540e-963.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1224contigP-littoralis_Contig1224:30148..33125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog13249.RPRC004224-PA
PFAMsDDE_Tnp_1_7
Model size2799
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000284
EggNOG OGs2CXJS@1|root,2RY1K@2759|Eukaryota,39VGM@33154|Opisthokonta,3BJCI@33208|Metazoa,3CWQ6@33213|Bilateria,41Z93@6656|Arthropoda
DescriptionTransposase IS4
Cds size885
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789530.9627502-UTR-P-littoralis_Contig1224:30147..307921680789530.9627502-UTR-P-littoralis_Contig1224:30147..30792Pylaiella littoralis U1_48UTRP-littoralis_Contig1224 30148..30792 -
1680789530.9950783-UTR-P-littoralis_Contig1224:31856..331251680789530.9950783-UTR-P-littoralis_Contig1224:31856..33125Pylaiella littoralis U1_48UTRP-littoralis_Contig1224 31857..33125 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789530.9754589-CDS-P-littoralis_Contig1224:30792..315611680789530.9754589-CDS-P-littoralis_Contig1224:30792..31561Pylaiella littoralis U1_48CDSP-littoralis_Contig1224 30793..31561 -
1680789530.9844196-CDS-P-littoralis_Contig1224:31740..318561680789530.9844196-CDS-P-littoralis_Contig1224:31740..31856Pylaiella littoralis U1_48CDSP-littoralis_Contig1224 31741..31856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1224.4.1prot_P-littoralis_Contig1224.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1224 30793..31856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1224.4.1

>prot_P-littoralis_Contig1224.4.1 ID=prot_P-littoralis_Contig1224.4.1|Name=mRNA_P-littoralis_Contig1224.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=295bp
MVFARFGTLVFTNWQDSKLVRFLSMIHITPEHFIPRVYSKYVAEKDGKEG
GFQPWCRLHYNKVMDGVDKADQHNGMYQPRHRANNYFWRRVFEQKLMQVC
TNAWLLFRWWLDDVQSKLKAEIDRLKAGGAAERDGTADGLLVGQLKEESK
AFEALTKQSRAQWMRALSVHLMSSSRLGNLVRGRRVLGKFGPIRTLKQRS
ADRTPLARLDGQRFTCEAKNCSACLSTKRNRKYTRGKKVGTACRCKVCKK
VANGGVAMSHECYNTPTKHKVGVEVGSDDRQKAAGVEWCNPTPV*
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mRNA from alignment at P-littoralis_Contig1224:30148..33125-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1224.4.1 ID=mRNA_P-littoralis_Contig1224.4.1|Name=mRNA_P-littoralis_Contig1224.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2978bp|location=Sequence derived from alignment at P-littoralis_Contig1224:30148..33125- (Pylaiella littoralis U1_48)
GCTGTCTGTATGCGATGGTGGCTGGGCGTCCAAAATGGGATGAACAAAAT GCGAAGGTTCCTCAAGTAAACGTGCTGTTTTTTTCAAATATATATATCCA CAAATGAATTTGATAACAACGAGCCCCCAACATAAGTTTCTGTTGACAAA TTCAACCAATCTGCTACTTCGTCGGCTGAAGTGTTGATCGTGAAATATCC ATACCTTCATGAAGGTAGTGCACCCACTATATACGCTCTGAGATTCACCC GATTCGGTAGTTTATACGTTTGCGCCACTCTGGCGTGAAGTTTGTCTTCC TGAAAAAGAAATCACACGCGGGAGGCACAGTAGAATGGCTTGATTGGGGC GTGGAAGCAAAACGGTTGGCATAATATAAACTTGCGGAAGAGAAACATTA CGACCCTCTTTAGGCCTCGCACTCATGTCGTATCAAGCGGTCTGTGTGGA GAACAACCGCGGCGACAATGGTCATGTCTCCAAATGAAATTTCCGCCAAA ATTTAAAACAACGTGACTAGAAGGATCGTGTTACATTGCTGTTAATGTAT CATGGCACTCAAAAACATTTGTGGACGTAAGAACAAAAAAGTGTCAAAAA TCCCGCGCACATGCCAAGCGTTCATTTTGCGGGCGTGGGGGGGGGGAGCG AGGGGGGCATGTGGCTCCCCGCCAGGACTGTTGTTGACGAGGGTACGCAA AACCCGCGACGTGAAAAATAGCAGAAATAACAAGGAAAATATAAAACGCG GCAGTCGTATAGAGAGCGGGCCTGTTTCTGCTACTTTGTTTCTGACATTT GCGTACTGGCACAAACCCGGGTACCAAGTGTACTTCGGTTCGCCACTTTC GTCGATCACGCGTACCTATGATTCGTTTCCATGTGCGATATGCGTCTTGT CATCTGTTTTTCCCAGGCTTGACGGTGTGGGCGGTGGCATGCTGGAGCGG GTACTGCTTCACGGCCTATACGGATGGCGGCTTTTAAGGAGATCCCCACC TGCGTGGTTGGCAGAACTGTCCGCTGGGGCGTACCTGTCGGATGGTTATA TTTGTGCTGTTCCACGTCTGTAAGGAACTGGGGGAGCAGTTGTTCAATTC TGGGTGCCACTTTGCGTGCGATAACTACTTCATATCGCCCATTCTGTTCA TGTGTCTGCAATGGTTTGGCGTATTCGCTGTAGGGACGCTTCGGGAAAAC CACAGGAGAAGTAAGGAAGCCATCCAGATTTAGTCCTTGACGAACCAGTA CGTGAGAAAGAAGGGAGACATGGTGTTCGCGCGGTTCGGGACCTTGGTGT TCACAAACTGGCAGGACTCCAAGCTCGTACGGTTCCTGTCCATGATCCAT ATCACGCCAGAGCACTTCATCCCACGGGTGTACAGGCGAGAGAAACGACC TCCCGTCCAAGGTTGCAAAGTGATAGTTGTTCGTGTTGCCTTCTCAGGTC TTTTTGTCTGGACTATTCACTCTGCCGAGCCGACTTTCAAAGCAATGCTC TCAACCCGAATCCCCACCCGCTGTCTATTTGGTGCCCCTTGTCGCATTCG TTATTTTTGAACAGTAAATACGTGGCGGAAAAAGACGGAAAGGAAGGCGG GTTCCAGCCATGGTGTCGGTTGCATTACAACAAGGTCATGGATGGGGTAG ACAAAGCGGACCAGCACAATGGTATGTACCAGCCCCGACACCGAGCGAAT AACTACTTCTGGCGCCGGGTTTTTGAGCAAAAGCTGATGCAAGTCTGCAC GAATGCGTGGCTGTTGTTTCGTTGGTGGTTAGATGATGTGCAAAGCAAGC TGAAGGCTGAGATTGACAGATTGAAAGCCGGGGGGGCGGCCGAACGCGAC GGTACCGCCGATGGGTTATTGGTTGGACAACTGAAGGAAGAAAGTAAGGC ATTTGAGGCATTGACTAAGCAGAGTAGGGCTCAGTGGATGAGGGCACTCA GCGTTCACCTCATGTCATCGTCTAGATTGGGCAACTTAGTCAGGGGGCGC CGAGTCCTCGGGAAGTTTGGCCCTATCCGTACGTTGAAGCAGCGGAGTGC TGACAGGACCCCCCTAGCGAGACTAGACGGCCAAAGGTTTACTTGCGAGG CGAAGAATTGCAGCGCTTGCCTCTCAACAAAGCGCAACCGAAAATACACG CGTGGCAAGAAAGTCGGTACCGCCTGTAGATGCAAAGTTTGCAAGAAGGT CGCGAACGGAGGTGTGGCCATGTCCCACGAGTGTTACAACACCCCAACAA AACACAAAGTCGGCGTTGAAGTCGGCTCAGACGACCGGCAGAAAGCGGCC GGAGTTGAGTGGTGCAATCCGACCCCCGTATAATCGCGTTGACAACATGT GTTCTTCCGCACAGCGGTAGGGTGTGCCTGGTATGTTGCTTTGGGTGCAC AGTTTGAAATCGACGAAGGTGGCGTGCTGCAATCCTCACTGCCGTGCGTT TCCTTCGTTATCTAGGTGATAGATCAAGGAGGAATAGTTTCGATGCGGGA GGGGGGGGGCGAAAGGGCACAATCATTTTGTTTATTTTTCTCTGCTCGGT GTCCTCGCGGTCAAACATTCCCAGTTTTCTCGCTGTCTACATTTCTTCTC TGTTAGGTTGCCTGAAAGACGGTTGTTAAGAGACGGAATATGCTTATATA CGTTTATTTTAGAAAGGCACGAGGAACTTAGAGCTGGGATTGTGTACATT GGGCAAGTCTTTGTCTAGCGACATCGGTCGCCCCGCGACGCTTTTGTCGG GGCTGTGCTTGAGATTGCGACCAACATGCTATACGGATGAACACATGTTT TTTTTGTTTCTTGGCTTCGTTGCGTTTTGGCATACCTGTTTGTATTTGGT CGCGAGACACGAATCTCAGAACGTCTCCAAAAAGCATGTGATAGAACGAA ATTAAAAACATGCACGCACACCCATAAATGCGACGTGCCTTGTTTTCTTT CAATAGCACCCAGCACTGCGAGTGCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1224:30148..33125-

>mRNA_P-littoralis_Contig1224.4.1 ID=mRNA_P-littoralis_Contig1224.4.1|Name=mRNA_P-littoralis_Contig1224.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=885bp|location=Sequence derived from alignment at P-littoralis_Contig1224:30148..33125- (Pylaiella littoralis U1_48)
ATGGTGTTCGCGCGGTTCGGGACCTTGGTGTTCACAAACTGGCAGGACTC
CAAGCTCGTACGGTTCCTGTCCATGATCCATATCACGCCAGAGCACTTCA
TCCCACGGGTGTACAGTAAATACGTGGCGGAAAAAGACGGAAAGGAAGGC
GGGTTCCAGCCATGGTGTCGGTTGCATTACAACAAGGTCATGGATGGGGT
AGACAAAGCGGACCAGCACAATGGTATGTACCAGCCCCGACACCGAGCGA
ATAACTACTTCTGGCGCCGGGTTTTTGAGCAAAAGCTGATGCAAGTCTGC
ACGAATGCGTGGCTGTTGTTTCGTTGGTGGTTAGATGATGTGCAAAGCAA
GCTGAAGGCTGAGATTGACAGATTGAAAGCCGGGGGGGCGGCCGAACGCG
ACGGTACCGCCGATGGGTTATTGGTTGGACAACTGAAGGAAGAAAGTAAG
GCATTTGAGGCATTGACTAAGCAGAGTAGGGCTCAGTGGATGAGGGCACT
CAGCGTTCACCTCATGTCATCGTCTAGATTGGGCAACTTAGTCAGGGGGC
GCCGAGTCCTCGGGAAGTTTGGCCCTATCCGTACGTTGAAGCAGCGGAGT
GCTGACAGGACCCCCCTAGCGAGACTAGACGGCCAAAGGTTTACTTGCGA
GGCGAAGAATTGCAGCGCTTGCCTCTCAACAAAGCGCAACCGAAAATACA
CGCGTGGCAAGAAAGTCGGTACCGCCTGTAGATGCAAAGTTTGCAAGAAG
GTCGCGAACGGAGGTGTGGCCATGTCCCACGAGTGTTACAACACCCCAAC
AAAACACAAAGTCGGCGTTGAAGTCGGCTCAGACGACCGGCAGAAAGCGG
CCGGAGTTGAGTGGTGCAATCCGACCCCCGTATAA
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