mRNA_P-littoralis_Contig1224.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE) HSP 1 Score: 174 bits (441), Expect = 1.300e-43 Identity = 129/420 (30.71%), Postives = 181/420 (43.10%), Query Frame = 1
Query: 919 LTVWAVACWSGYCFTAYTDGGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFAVGTLRENHRRSKEAIQI*SLTNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITP-----------------EHFIPRVYSKYVA-------------EKDGKEGGF----QPWCRLHYNKVMDGVDKADQHNGMYQPRHRANNYFWRRVFEQKLMQVCTNAWLLFRWWLDDVQSKLKAEIDRLKAGGAAERDGTADGLLVGQLKEESKAFEALTKQSRAQWMRALSVHLMSSSRLGNLVRGRRVLGKFGPIRTLKQRSADRTPLARLDGQRFTCEAKNCSACLSTKRNRKYTRGKKVGTACRCKVCKKVANGGVAMSHECYNTPTKH 2076
+ ++A+ YCF + DGG GDP LR W +CPLGRT R V+ VL CK+ G+++ SG + A DNYF SP LF CL +FAVGT R N R+ A+ ++ ++G+M FAR G + F W DSK + S IHI +HF P Y +V K G+ G QPW R Y M GV+ ADQ N + H++ WRRV E K + TN ++F+ ++ S L+ + ++ GG E + +V +L L K RA W LS LM+ +G +G R G D + K C+ K ++G C V K+ + GV M C+N P KH
Sbjct: 1 MKLFAICDIERYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVYIAMDNYFTSPTLFECLASHDIFAVGTCRSN--RTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDSDGGDDHFAPLPYRCFVCPLPSRPHPFMFSLRKAGQAGKSLELQQPWMRKDYVANMGGVETADQQNVSHTHDHKSYTNHWRRVIEGKFERRFTNIVVMFKKYV----SLLEDQANKRIKGGGLELE------VVEKLDRVLVELGRLAKMERAVWDEMLSTELMARCNVGRPNKGGRPAAVTGAP----------------DKVWGSISVKTQRKCMHPGCKSKTSKGCACAELC---VGKQAGDRGVLMCQACFNNPVKH 389
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE) HSP 1 Score: 176 bits (445), Expect = 9.410e-42 Identity = 130/412 (31.55%), Postives = 192/412 (46.60%), Query Frame = 1
Query: 946 SGYCFTAYTDGGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFAVGTLRENHRRSKEAIQI*SLTNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITP-----------EHFIPRVYSKYVAEKDGKEGGFQ-PWCRLHYNKVMDGVDKADQHNGMYQPRHRANNYFWRRVFEQKLMQVCTNAWLLFRWWLDDVQSKLKAEIDRLKAGGAAERDGTADGLLVGQLKEESKAFEALTKQSRAQWMRALSVHLMSSSRLGNLVRGRRVLGKFGPIRTLKQRSADRTPLARLDGQRFTCEAKNCSACLSTKRNRKYTRGKKVGTACRCK-VCKKVANGGVAMSHECYNTPTKHKVGVEVGSD---DRQKAAGVEW 2133
+ YC T+ DGG GDP LR + +CPLGRT R V+ VL C L +++ SG A DNYF SP LF CL +FAVGT R + +A + SL + + +GDM F R G + W DSK + +S IH+ +HF P S ++G+ Q P+ R+ Y M GVD ADQ NG + H++ FWRRV++ KL Q TNA+L+FR W++ + +++A+ + GG E +L+ S L+K RA W ++ LM+ N+ R P + K+ ++D P + G + K+ CL+ +G C CK C GV M C+ +P H+ + D + + G EW
Sbjct: 437 TSYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTAGADAY-LESL-GRTIPNRGDMNFCRSGQVACVQWADSKDIFLISTIHVAQPAKGKEEAGGIDHFKPLPLSLRAKGRNGEPLDLQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRKWVELLIREVEAK-KPIAPGGELE-----------ELELASTELATLSKVERAVWDEQMATLLMAEC---NVAR---------PNKGGKRPASDNKPADPVWG---SVTLKSGRLCLNPTCKTTSMKG------CSCKQFCTWGDKAGVLMCETCWKSPESHEQAAKAYWDSVSEGRNRTGFEW 813
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE) HSP 1 Score: 176 bits (446), Expect = 2.100e-41 Identity = 133/430 (30.93%), Postives = 185/430 (43.02%), Query Frame = 1
Query: 916 GLTVWAVACWSGYCFTAYTDGGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFAVGTLRENHRRSKEAIQI*SLTNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITP-----------------EHFIPRVYSKYVA-------------EKDGKEGGF----QPWCRLHYNKVMDGVDKADQHNGMYQPRHRANNYFWRRVFEQKLMQVCTNAWLLFRWWLDDVQSKLKAEIDRLKAGGAAERDGTADGLLVGQLKEESKAFEALTKQSRAQWMRALSVHLMSSSRLGNLVRGRR---VLGK----FGPIRTLKQRSADRTPLARLDGQRFTCEAKNCSACLSTKRNRKYTRGKKVGTACRCKVC--KKVANGGVAMSHECYNTPTKH 2076
G+ ++A+ GYCF + DGG GDP LR W +CPLGRT R V+ VL CK+ G+++ SG H A N F SP LF CL +FAVGT R N R+ A+ ++ ++G+M FAR G + F W DSK + S IHI +HF P Y +V K G+ G QPW R Y M GV+ AD+ NG + H + WR V E K Q TN +++F+ ++ S L+ + ++ GG E + +V +L L K RA W LS LM+ +G G R V G +G I QR C++K C AC ++C K+ + GV M C+N P +H
Sbjct: 775 GMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVHIAMSNNFTSPTLFECLASHDIFAVGTCRSN--RTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDDDGGDDHFAPLPYRCFVCIPPSRPHPFMFSLRKAGQAGKSLELQQPWMRKDYVANMGGVNTADRQNGSHTHDHESYTNHWRGVMEGKFKQTFTNIFVMFKKYV----SLLEGQANKRIEGGGVELE------VVEKLDRLLVELGRLAKMERAVWDEMLSTELMARCNVGRPNNGGRPAEVTGAPDKVWGSISVKTQRKC----------MHPGCKSKTWKGC-----------------AC-AELCVGKQAGDRGVLMCQACFNNPVRH 1164
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE) HSP 1 Score: 170 bits (431), Expect = 1.490e-39 Identity = 98/260 (37.69%), Postives = 130/260 (50.00%), Query Frame = 1
Query: 916 GLTVWAVACWSGYCFTAYTDGGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFAVGTLRENHRRSKEAIQI*SLTNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITP-----------------EHFIPRVYSKYVA-------------EKDGKEGGF----QPWCRLHYNKVMDGVDKADQHNGMYQPRHRANNYFWRRVFEQKLMQVCTNAWLLFR 1593
G+ ++A+ GYCF + DGG GDP LR W +CPLGRT R V+ VL CK+ G+++ SG + A DNYF SP LF CL +FAVGT R N R+ A+ ++ ++G+M FAR G + F W DSK + S IHI +HF P Y +V K G+ G QPW R Y M GVD ADQ NG + H++ WRRV E K Q TN +++F+
Sbjct: 829 GMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGAYIAMDNYFKSPTLFECLASHDIFAVGTCRSN--RTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDSDGGDDHFAPLPYRCFVCPLPSRPHPFMFSLRKAGQAGKSLELQQPWMRKDYVANMGGVDTADQQNGSHTHDHKSYTNHWRRVMEGKFEQTFTNIFVMFK 1086
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5KJJ0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ0_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.020e-23 Identity = 111/421 (26.37%), Postives = 168/421 (39.90%), Query Frame = 1
Query: 916 GLTVWAVACWSGYCFTAYTDGGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFAVGTLRENHRRSKEAIQI*SLTNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITP-----------EHFIPRVYSKYVAEKDGKEGGFQPWCRLHYNKVMDGVDKADQHNGMYQPRHRANNYFWRRVFEQKLMQVCTNAWLLFRWWLDDVQSKLKAEIDRLKAGGAAERDGTADGLLVGQLKEESKAFEALTKQSRAQWMRALSVHLMSSSRLGNLVRGRRVLGKFGPIRTLKQRSADRTPLARLDGQRFTCEAKNCSACLSTKRNRKYTRGKKVGTACRCK-VCKKVANGGVAMSHECYNTPTKHKVGVEVGSDDRQKAA---GVEW 2133
G+ + A +GYC T+ DGG GDP LR + +CPLGR R V+ VL C L +++ SG A DNYF SP +F CL + +FAVGT R + +A + SL + + +GDM R G + W DSK + +S IH +H P S+ A+K GG ++ ++ A RA W LM+ C A + L E++ K A G + +L+ S L+K RA W ++ LM+ + +G R + ++D P + G + K+ CL+ + T+G C C+ C + GV M C+ +P H+ + D K G EW
Sbjct: 158 GMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRATRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTVFECLASYDIFAVGTCRADRTAGADAY-LESL-GRTIPNRGDMNLCRSGQVACVQWADSKGIFLISTIHFAQPAKGKEEAGGIDHIKPLPLSEVEAKKPIAPGG-----------ELEELELASTELATLSKVERA---VWDEQKATLLMEKCNVA-------RPNTVELLIREVEAKKP--------IAPGGELEELELASTELATLSKVERAVWDEQMATLLMAKCNVARPNKGGR------------RPASDNKPADPVWG---SVTLKSGRLCLNPTCKTRSTKG------CSCEQFCTRGDESGVFMCETCWKSPESHEQAAKAYWDGLSKGRNRKGFEW 526
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE) HSP 1 Score: 114 bits (285), Expect = 4.980e-23 Identity = 66/174 (37.93%), Postives = 90/174 (51.72%), Query Frame = 1
Query: 916 GLTVWAVACWSGYCFTAYTDGGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFAVGTLRENHRRSKEAIQI*SLTNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITP-----------EHFIPRVYSKYVAEK 1404
G+ + A +GYC T+ DGG GDP LR + +CPLGRT R V+ VL C L +++ SG A DNYF SP LF CL +FAVGT R + +A + SL + + +GDM F R G + W DS + +S IH+ +HF P S+ A+K
Sbjct: 144 GMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTAGADAY-LESL-GRTIPNRGDMNFCRSGQVACVQWADSNDIFLISTIHVAQPVKGKEEAGGIDHFKPLPLSEVKAKK 315
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5JXZ2_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ2_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 1.130e-15 Identity = 55/150 (36.67%), Postives = 72/150 (48.00%), Query Frame = 1
Query: 976 GGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFAVGTLRENHRRSKEAIQI*SLTNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITPEHFIPRVYSKYVAEKDGKEGGF 1425
GG GDP LR + +CPLGRT R V+ VL C L +++ S A DNYF S LF CL +FAVGT R + +A + + +GDM F R + W DSK + +S IH+ +K E G GGF
Sbjct: 127 GGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSEVFIAMDNYFTSLTLFECLASHDIFAVGTCRADRTAGADAYL--ETLGRTIPNRGDMNFCRSWQVACVQWTDSKDIFLISTIHVAQP-------AKGKEEAGGIGGGF 267
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5KMJ3_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ3_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.170e-12 Identity = 39/88 (44.32%), Postives = 50/88 (56.82%), Query Frame = 1
Query: 916 GLTVWAVACWSGYCFTAYTDGGF*GDPHLRGWQNCPLGRTCRMVIFVLFHVCKELGEQLFNSGCHFACDNYFISPILFMCLQWFGVFA 1179
G+ + A + Y T+ DGG GDP LR + +CPLGRT R V+ VL C L +++ SG A DNYF SP LF CL +FA
Sbjct: 157 GMKLLAACDITSYSLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGLFIAMDNYFTSPTLFECLASHDIFA 244
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5JER6_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER6_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 2.990e-12 Identity = 67/242 (27.69%), Postives = 108/242 (44.63%), Query Frame = 1
Query: 1360 EHFIPRVYSKYVAEKDGKEGGFQ-PWCRLHYNKVMDGVDKADQHNGMYQPRHRANNYFWRRVFEQKLMQVCTNAWLLFRWWLDDVQSKLKAEIDRLKAGGAAERDGTADGLLVGQLKEESKAFEALTKQSRAQWMRALSVHLMSSSRLGNLVRGRRVLGKFGPIRTLKQRSADRTPLARLDGQRFTCEAKNCSACLSTKRNRKYTRGKKVGTACRCK-VCKKVANGGVAMSHECYNTPTKHK 2079
+HF P S ++G+ Q PW R+ Y M GVD ADQ NG + H++ FWRRV++ KL Q TNA+L+FR W++ + +++ + + GG E +L+ S L+K RA W ++ LM+ + +G R + ++D P + G + K+ CL+ + T+G C CK C + GV M C+ +P H+
Sbjct: 260 DHFKPLPLSLRAKGRNGEPLDLQQPWTRMDYFLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRKWVELLIREVEPK-KPITPGGELE-----------ELELASTELATLSKVERAVWDEQMATLLMAKCNVARPNKGGR------------RPASDNKPADPVWG---SVTLKSGRLCLNPTCKTRSTKG------CSCKQFCTRGDKSGVLMCETCWKSPESHE 468
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Match: A0A6H5JIB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB8_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 8.540e-9 Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 1
Query: 1240 TNQYVRKKGDMVFARFGTLVFTNWQDSKLVRFLSMIHITPEHFIPR 1377
T QYVRKKG+MV ARFG LVF W+DSK+V+FLS +H++P+H +P+
Sbjct: 582 TRQYVRKKGEMVLARFGFLVFVQWKDSKVVKFLSTVHLSPKHVLPK 627 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1224.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1224.4.1 >prot_P-littoralis_Contig1224.4.1 ID=prot_P-littoralis_Contig1224.4.1|Name=mRNA_P-littoralis_Contig1224.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=295bp MVFARFGTLVFTNWQDSKLVRFLSMIHITPEHFIPRVYSKYVAEKDGKEGback to top mRNA from alignment at P-littoralis_Contig1224:30148..33125- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1224.4.1 ID=mRNA_P-littoralis_Contig1224.4.1|Name=mRNA_P-littoralis_Contig1224.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2978bp|location=Sequence derived from alignment at P-littoralis_Contig1224:30148..33125- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1224:30148..33125- >mRNA_P-littoralis_Contig1224.4.1 ID=mRNA_P-littoralis_Contig1224.4.1|Name=mRNA_P-littoralis_Contig1224.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=885bp|location=Sequence derived from alignment at P-littoralis_Contig1224:30148..33125- (Pylaiella littoralis U1_48)back to top |