mRNA_P-littoralis_Contig1223.1.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1223.1.2
Unique NamemRNA_P-littoralis_Contig1223.1.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 9.390e-55
Identity = 97/185 (52.43%), Postives = 132/185 (71.35%), Query Frame = 1
Query:    4 KKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPEGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 558
            K+E +G   SF+PSK TLD+   P+FDP KLGRF   +LG+LAFTFF+ MFP AV+ LLV++TN+YF FC +T        +E RH+ ++   G++SWP+ GIT +MM  VI I+LT+GLV+LP + +HW    +HD+KLVR  + RDMFLLIY RFFHMA + +P+R   G+ + GWD+L HIR
Sbjct:  453 KREGEGEDVSFKPSKKTLDA--LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTNEYFNFCRSTKNPKG---QEQRHRDQKARKGKSSWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFFHMASSGAPERLQGGTTEPGWDSLHHIR 632          
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.040e-52
Identity = 96/185 (51.89%), Postives = 129/185 (69.73%), Query Frame = 1
Query:    4 KKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPEGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 558
            K+E +G   SF+PSK T+ +   P+FDP KLGRF   +LG+LAFTFF+ MFP AV+ LLV++T +YF FC +T    E   +E RH+ K+   G++SWP+ GIT  MM  VIGI+L +GLV+LP + +HW    +HD+KLVR  + RDM LLIY RFFHMA + +PKR  DG+ + GW +L HIR
Sbjct:  659 KREGEGEDVSFKPSKKTIGA--LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTYEYFNFCRSTKNPKE---QEQRHRDKKARKGKSSWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACLPRDMSLLIYGRFFHMASSGAPKRLQDGTTEPGWGSLHHIR 838          
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5KHW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.510e-13
Identity = 60/188 (31.91%), Postives = 89/188 (47.34%), Query Frame = 1
Query:   73 PSFDPSKLGRFKSAQLGQ---LAFTFFNFMFPMAVVALLVKET----------NDYFTFCTTTPTRNEDDK----REDRHKAKEPTNGRASWP---------EGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 558
            P  D + L   +S   G+   L FTFF   FP     +++KE+          + Y  FC      +E D     +EDRH+ K+   G    P         E       +Y V+GI++T  L + P I ++W V  + ++ LVR  M RD+F+L Y RFFH+AP P+ K + D   D  +D+  HIR
Sbjct:  234 PKVDKAGLSALRSFVNGKGQALPFTFFEKTFPKEAQDIVLKESLALQAAEIVSSMYVNFCA-----DESDPPPEHQEDRHRRKKVVRGFQEVPSKEMADGSREYAFERKHLYGVMGILITTRLTKKPRIIDYWGVEAHDNYPLVRACMPRDLFILFYGRFFHLAP-PTGKLNKD---DPQYDSKHHIR 412          
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5JWP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 9.880e-13
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 1
Query:  325 MYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 558
            +Y V+GI++T GL R P I +HW V  + ++ L R  M RD+F++ Y RFFH+AP P+ K   D   D  +D+  HIR
Sbjct:   15 LYGVMGILITAGLTRKPRIIDHWGVGAHDNYPLARACMPRDLFIMFYDRFFHLAP-PTGKLKKD---DPQYDSKHHIR 88          
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5KN93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN93_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.350e-11
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  325 MYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 558
            +Y V+GI++T GL + P I +HW V  +++  LVR  M RD+F+L Y RFFH+AP     +  D  YD    +  HIR
Sbjct:   82 LYGVMGILITTGLTKKPRIIDHWGVEAHNNNPLVRACMPRDLFILFYGRFFHLAPPTGKLKKHDPQYD----SKHHIR 155          
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5JT54_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT54_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.930e-11
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  325 MYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 558
            +Y V+GI++T GL + P I +HW V  + ++ LVR  M RD+F+L Y RFFH+AP P+ K   D   D  +D+  HIR
Sbjct:   15 LYGVMGILITTGLTKKPRIIDHWGVEAHDNYPLVRACMPRDLFILFYGRFFHLAP-PNGKLKKD---DPQYDSKHHIR 88          
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5LD42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD42_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.480e-10
Identity = 47/143 (32.87%), Postives = 71/143 (49.65%), Query Frame = 1
Query:   73 PSFDPSKLGRFKSAQLGQ---LAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRH-KAKEPTNGRASWPEGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAP 489
            P  D + L   +S   G+   L FTFF   FP     +++KE             RN++  RE +   +KE  +G   +         +Y V+GI++T GL + P I +HW V  + ++ L R  M RD+F+L Y RFFH+AP
Sbjct:   37 PKVDKAVLSALRSFVNGKGQALPFTFFEKTFPKEAQDIVLKEMK-----------RNKEVVREFQEIPSKEMADGSREY---AFERKHLYGVMGILITTGLTKKPRIIDHWGVEAHDNYPLFRACMPRDLFILFYGRFFHLAP 165          
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5KVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH8_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.330e-9
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1
Query:  364 VRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGS 522
            V+L E+ +HW    +HD KLVR  + RDMFLL Y RFFHMA + +PKR  DG+
Sbjct:  859 VQLAELQDHWSYHSFHDCKLVRACLPRDMFLLTYGRFFHMASSAAPKRLQDGT 911          
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.120e-9
Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 1
Query:  247 REDRHKAKEPTNGRASWP---------EGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPA 492
            +E RH+AK+ T G  + P         E       +Y V+GI++T G+ +   I +HW +  + ++ LVR  M RD+F+L Y RFFH+APA
Sbjct:   66 QEPRHRAKKVTRGFQTVPYRDLADGSREYAFEHKHLYGVMGILITAGITQNRRITDHWGMELHDNYPLVRACMPRDLFVLFYGRFFHLAPA 156          
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5K073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K073_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.370e-7
Identity = 48/149 (32.21%), Postives = 67/149 (44.97%), Query Frame = 1
Query:  127 LAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDK----REDRHKAKEPTNGRASWPEGGIT-ANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 558
            L F FF   FP     ++++ETN Y  FC      +E D     +E RH+AK+ T    + P   +   +  Y      L+        I +HW V  + ++ LVR  M RD+ +L Y RFFH+APA       D  YD       HIR
Sbjct:  125 LPFMFFEKTFPTEAQDVVLRETNRYVNFCA-----DESDPPLEHQEPRHRAKKVTRRFETVPYTDLADGSREYAFERKHLSKR-----RITDHWRVELHDNYPLVRACMPRDLVVLFYGRFFHLAPATGKPNKTDPQYD----CKHHIR 259          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5L3T1_9PHAE9.390e-5552.43DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JFU5_9PHAE1.040e-5251.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHW0_9PHAE4.510e-1331.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWP6_9PHAE9.880e-1343.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN93_9PHAE1.350e-1142.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT54_9PHAE1.930e-1144.87DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5LD42_9PHAE1.480e-1032.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVH8_9PHAE2.330e-954.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC56_9PHAE3.120e-937.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K073_9PHAE2.370e-732.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1223contigP-littoralis_Contig1223:898..1674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog400682.PAC_15707198
PFAMsDDE_Tnp_1_7
Model size562
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.74e-05
EggNOG OGs2CXJS@1|root,2RY1K@2759|Eukaryota,39VGM@33154|Opisthokonta,3BJCI@33208|Metazoa
DescriptionpiggyBac transposable element-derived protein
Cds size561
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789530.78464-CDS-P-littoralis_Contig1223:897..10861680789530.78464-CDS-P-littoralis_Contig1223:897..1086Pylaiella littoralis U1_48CDSP-littoralis_Contig1223 898..1086 +
1680789530.7952676-CDS-P-littoralis_Contig1223:1302..16741680789530.7952676-CDS-P-littoralis_Contig1223:1302..1674Pylaiella littoralis U1_48CDSP-littoralis_Contig1223 1303..1674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1223.1.2prot_P-littoralis_Contig1223.1.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1223 898..1674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1223.1.2

>prot_P-littoralis_Contig1223.1.2 ID=prot_P-littoralis_Contig1223.1.2|Name=mRNA_P-littoralis_Contig1223.1.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp
HKKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNF
MFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWP
EGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDM
FLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR*
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mRNA from alignment at P-littoralis_Contig1223:898..1674+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1223.1.2 ID=mRNA_P-littoralis_Contig1223.1.2|Name=mRNA_P-littoralis_Contig1223.1.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=777bp|location=Sequence derived from alignment at P-littoralis_Contig1223:898..1674+ (Pylaiella littoralis U1_48)
CACAAGAAGGAAACTGACGGGTGCCCGAAGTCGTTTCGGCCGTCGAAGTC GACCCTCGATTCGGATGAGTATCCAAGTTTCGACCCGTCGAAACTGGGGC GTTTCAAGAGTGCGCAACTGGGACAGCTGGCATTCACCTTTTTCAACTTC ATGTTCCCCATGGCGGTCGTCGCTCTACTTGTCAAGGAGGTGATACATTG TACCCATTATGTCGAGCAGCAGCTTCAAAAGCGGAATGAACGCGCTTATG GGGAAATTTCGAGGATCTTTCTTTTAGGGGAACGCGGAACACGACATTAC CCCCCTCCCCGCCCCCACTTATTTTTTCCATGAAATAGTGCAACGTCCAA GGCTCACCGCAAAACGTTTGCGTTATTTATTCCCGTCCCCCGTCTCACAA TACAGACGAACGACTACTTCACCTTCTGCACCACAACACCAACTCGCAAT GAGGATGACAAGCGTGAAGATCGACACAAGGCGAAGGAACCCACGAATGG GCGCGCGTCGTGGCCCGAGGGTGGCATCACCGCGAACATGATGTACACCG TCATCGGCATCGTCTTGACGCTGGGACTTGTGAGGCTTCCGGAAATCGCA AATCACTGGGACGTGAGCGACTACCACGACTTCAAGTTGGTTCGACAGAG CATGACGCGAGACATGTTTCTCCTCATCTACAGCCGTTTTTTCCACATGG CGCCCGCCCCCTCACCGAAGAGACATCCAGATGGCTCCTACGACGAAGGG TGGGATGCCTTGTGGCATATTCGGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1223:898..1674+

>mRNA_P-littoralis_Contig1223.1.2 ID=mRNA_P-littoralis_Contig1223.1.2|Name=mRNA_P-littoralis_Contig1223.1.2|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig1223:898..1674+ (Pylaiella littoralis U1_48)
CACAAGAAGGAAACTGACGGGTGCCCGAAGTCGTTTCGGCCGTCGAAGTC
GACCCTCGATTCGGATGAGTATCCAAGTTTCGACCCGTCGAAACTGGGGC
GTTTCAAGAGTGCGCAACTGGGACAGCTGGCATTCACCTTTTTCAACTTC
ATGTTCCCCATGGCGGTCGTCGCTCTACTTGTCAAGGAGACGAACGACTA
CTTCACCTTCTGCACCACAACACCAACTCGCAATGAGGATGACAAGCGTG
AAGATCGACACAAGGCGAAGGAACCCACGAATGGGCGCGCGTCGTGGCCC
GAGGGTGGCATCACCGCGAACATGATGTACACCGTCATCGGCATCGTCTT
GACGCTGGGACTTGTGAGGCTTCCGGAAATCGCAAATCACTGGGACGTGA
GCGACTACCACGACTTCAAGTTGGTTCGACAGAGCATGACGCGAGACATG
TTTCTCCTCATCTACAGCCGTTTTTTCCACATGGCGCCCGCCCCCTCACC
GAAGAGACATCCAGATGGCTCCTACGACGAAGGGTGGGATGCCTTGTGGC
ATATTCGGTAA
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