mRNA_P-littoralis_Contig1223.1.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE) HSP 1 Score: 192 bits (489), Expect = 9.390e-55 Identity = 97/185 (52.43%), Postives = 132/185 (71.35%), Query Frame = 1
Query: 4 KKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPEGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 558
K+E +G SF+PSK TLD+ P+FDP KLGRF +LG+LAFTFF+ MFP AV+ LLV++TN+YF FC +T +E RH+ ++ G++SWP+ GIT +MM VI I+LT+GLV+LP + +HW +HD+KLVR + RDMFLLIY RFFHMA + +P+R G+ + GWD+L HIR
Sbjct: 453 KREGEGEDVSFKPSKKTLDA--LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTNEYFNFCRSTKNPKG---QEQRHRDQKARKGKSSWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFFHMASSGAPERLQGGTTEPGWDSLHHIR 632
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE) HSP 1 Score: 189 bits (481), Expect = 1.040e-52 Identity = 96/185 (51.89%), Postives = 129/185 (69.73%), Query Frame = 1
Query: 4 KKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPEGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 558
K+E +G SF+PSK T+ + P+FDP KLGRF +LG+LAFTFF+ MFP AV+ LLV++T +YF FC +T E +E RH+ K+ G++SWP+ GIT MM VIGI+L +GLV+LP + +HW +HD+KLVR + RDM LLIY RFFHMA + +PKR DG+ + GW +L HIR
Sbjct: 659 KREGEGEDVSFKPSKKTIGA--LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTYEYFNFCRSTKNPKE---QEQRHRDKKARKGKSSWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACLPRDMSLLIYGRFFHMASSGAPKRLQDGTTEPGWGSLHHIR 838
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5KHW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW0_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 4.510e-13 Identity = 60/188 (31.91%), Postives = 89/188 (47.34%), Query Frame = 1
Query: 73 PSFDPSKLGRFKSAQLGQ---LAFTFFNFMFPMAVVALLVKET----------NDYFTFCTTTPTRNEDDK----REDRHKAKEPTNGRASWP---------EGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 558
P D + L +S G+ L FTFF FP +++KE+ + Y FC +E D +EDRH+ K+ G P E +Y V+GI++T L + P I ++W V + ++ LVR M RD+F+L Y RFFH+AP P+ K + D D +D+ HIR
Sbjct: 234 PKVDKAGLSALRSFVNGKGQALPFTFFEKTFPKEAQDIVLKESLALQAAEIVSSMYVNFCA-----DESDPPPEHQEDRHRRKKVVRGFQEVPSKEMADGSREYAFERKHLYGVMGILITTRLTKKPRIIDYWGVEAHDNYPLVRACMPRDLFILFYGRFFHLAP-PTGKLNKD---DPQYDSKHHIR 412
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5JWP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP6_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 9.880e-13 Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 325 MYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 558
+Y V+GI++T GL R P I +HW V + ++ L R M RD+F++ Y RFFH+AP P+ K D D +D+ HIR
Sbjct: 15 LYGVMGILITAGLTRKPRIIDHWGVGAHDNYPLARACMPRDLFIMFYDRFFHLAP-PTGKLKKD---DPQYDSKHHIR 88
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5KN93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN93_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 1.350e-11 Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 325 MYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 558
+Y V+GI++T GL + P I +HW V +++ LVR M RD+F+L Y RFFH+AP + D YD + HIR
Sbjct: 82 LYGVMGILITTGLTKKPRIIDHWGVEAHNNNPLVRACMPRDLFILFYGRFFHLAPPTGKLKKHDPQYD----SKHHIR 155
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5JT54_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT54_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 1.930e-11 Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 325 MYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 558
+Y V+GI++T GL + P I +HW V + ++ LVR M RD+F+L Y RFFH+AP P+ K D D +D+ HIR
Sbjct: 15 LYGVMGILITTGLTKKPRIIDHWGVEAHDNYPLVRACMPRDLFILFYGRFFHLAP-PNGKLKKD---DPQYDSKHHIR 88
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5LD42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD42_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 1.480e-10 Identity = 47/143 (32.87%), Postives = 71/143 (49.65%), Query Frame = 1
Query: 73 PSFDPSKLGRFKSAQLGQ---LAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRH-KAKEPTNGRASWPEGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAP 489
P D + L +S G+ L FTFF FP +++KE RN++ RE + +KE +G + +Y V+GI++T GL + P I +HW V + ++ L R M RD+F+L Y RFFH+AP
Sbjct: 37 PKVDKAVLSALRSFVNGKGQALPFTFFEKTFPKEAQDIVLKEMK-----------RNKEVVREFQEIPSKEMADGSREY---AFERKHLYGVMGILITTGLTKKPRIIDHWGVEAHDNYPLFRACMPRDLFILFYGRFFHLAP 165
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5KVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH8_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 2.330e-9 Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 364 VRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGS 522
V+L E+ +HW +HD KLVR + RDMFLL Y RFFHMA + +PKR DG+
Sbjct: 859 VQLAELQDHWSYHSFHDCKLVRACLPRDMFLLTYGRFFHMASSAAPKRLQDGT 911
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 3.120e-9 Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 1
Query: 247 REDRHKAKEPTNGRASWP---------EGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPA 492
+E RH+AK+ T G + P E +Y V+GI++T G+ + I +HW + + ++ LVR M RD+F+L Y RFFH+APA
Sbjct: 66 QEPRHRAKKVTRGFQTVPYRDLADGSREYAFEHKHLYGVMGILITAGITQNRRITDHWGMELHDNYPLVRACMPRDLFVLFYGRFFHLAPA 156
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Match: A0A6H5K073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K073_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 2.370e-7 Identity = 48/149 (32.21%), Postives = 67/149 (44.97%), Query Frame = 1
Query: 127 LAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDK----REDRHKAKEPTNGRASWPEGGIT-ANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 558
L F FF FP ++++ETN Y FC +E D +E RH+AK+ T + P + + Y L+ I +HW V + ++ LVR M RD+ +L Y RFFH+APA D YD HIR
Sbjct: 125 LPFMFFEKTFPTEAQDVVLRETNRYVNFCA-----DESDPPLEHQEPRHRAKKVTRRFETVPYTDLADGSREYAFERKHLSKR-----RITDHWRVELHDNYPLVRACMPRDLVVLFYGRFFHLAPATGKPNKTDPQYD----CKHHIR 259 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1223.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1223.1.2 >prot_P-littoralis_Contig1223.1.2 ID=prot_P-littoralis_Contig1223.1.2|Name=mRNA_P-littoralis_Contig1223.1.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp HKKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNFback to top mRNA from alignment at P-littoralis_Contig1223:898..1674+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1223.1.2 ID=mRNA_P-littoralis_Contig1223.1.2|Name=mRNA_P-littoralis_Contig1223.1.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=777bp|location=Sequence derived from alignment at P-littoralis_Contig1223:898..1674+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1223:898..1674+ >mRNA_P-littoralis_Contig1223.1.2 ID=mRNA_P-littoralis_Contig1223.1.2|Name=mRNA_P-littoralis_Contig1223.1.2|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig1223:898..1674+ (Pylaiella littoralis U1_48)back to top |