mRNA_P-littoralis_Contig1220.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1220.4.1
Unique NamemRNA_P-littoralis_Contig1220.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1220.4.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 4.330e-6
Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   25 VVRESRLEDSQEARLNVMRKLQTAHNMFRHAVVWNPIADTLQHFSGSA 168
            VV++S+ E++  A      KL+ AHNMF +AVVW+P+ +TL+HFSG+A
Sbjct:  314 VVQDSKEEETPAALEEAEEKLRRAHNMFHNAVVWDPLKNTLRHFSGAA 361
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1220.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFX7_9PHAE4.330e-650.00Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1220contigP-littoralis_Contig1220:45244..45421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size178
Hectar predicted targeting categoryother localisation
Exons1
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789530.2292197-CDS-P-littoralis_Contig1220:45244..454211680789530.2292197-CDS-P-littoralis_Contig1220:45244..45421Pylaiella littoralis U1_48CDSP-littoralis_Contig1220 45245..45421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1220.4.1prot_P-littoralis_Contig1220.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1220 45245..45421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1220.4.1

>prot_P-littoralis_Contig1220.4.1 ID=prot_P-littoralis_Contig1220.4.1|Name=mRNA_P-littoralis_Contig1220.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp
IQRALCEGVVRESRLEDSQEARLNVMRKLQTAHNMFRHAVVWNPIADTLQ
HFSGSAPAQ
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mRNA from alignment at P-littoralis_Contig1220:45244..45421-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1220.4.1 ID=mRNA_P-littoralis_Contig1220.4.1|Name=mRNA_P-littoralis_Contig1220.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=178bp|location=Sequence derived from alignment at P-littoralis_Contig1220:45244..45421- (Pylaiella littoralis U1_48)
ATCCAGAGAGCACTGTGCGAAGGCGTTGTCCGAGAGTCGAGATTGGAGGA
CAGTCAGGAAGCGAGGTTGAATGTGATGAGGAAGTTACAAACAGCTCACA
ACATGTTTCGACACGCCGTCGTGTGGAACCCGATTGCGGATACTCTACAG
CACTTCTCCGGGTCGGCTCCGGCGCAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1220:45244..45421-

>mRNA_P-littoralis_Contig1220.4.1 ID=mRNA_P-littoralis_Contig1220.4.1|Name=mRNA_P-littoralis_Contig1220.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig1220:45244..45421- (Pylaiella littoralis U1_48)
ATCCAGAGAGCACTGTGCGAAGGCGTTGTCCGAGAGTCGAGATTGGAGGA
CAGTCAGGAAGCGAGGTTGAATGTGATGAGGAAGTTACAAACAGCTCACA
ACATGTTTCGACACGCCGTCGTGTGGAACCCGATTGCGGATACTCTACAG
CACTTCTCCGGGTCGGCTCCGGCGCAA
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