mRNA_P-littoralis_Contig122.93.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.93.1
Unique NamemRNA_P-littoralis_Contig122.93.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig122.93.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 3.540e-25
Identity = 72/195 (36.92%), Postives = 103/195 (52.82%), Query Frame = 1 
Query:    1 MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVLRLYRALVEYF-NRCGSDRALFPTEWQAVQQVVSVLDDAAATAAQVQGGRHGFVGQSINDFFVLHHSVSAPDQDIRCLD-PWDGP---KTSVTTSQLQPLTRTLLTVMAEDMSERELGSATLSPETINLVLDPRFKSCCSSVCLNG 570
            +VG  SHS  NNDE K +Q   EE   + ELIRRNDTRWAS HAM+ R+L+L +A+VEYF +   ++R L   EW    +V S+LD  A    ++QG     + Q++ +   +    S     IR  D P++     K  +    L   T  +  V+   M ++ELG+A +  E I  +LDPR K C     +NG
Sbjct:   84 VVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNG 278
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BLAST of mRNA_P-littoralis_Contig122.93.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 6.280e-25
Identity = 72/195 (36.92%), Postives = 103/195 (52.82%), Query Frame = 1 
Query:    1 MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVLRLYRALVEYF-NRCGSDRALFPTEWQAVQQVVSVLDDAAATAAQVQGGRHGFVGQSINDFFVLHHSVSAPDQDIRCLD-PWDGP---KTSVTTSQLQPLTRTLLTVMAEDMSERELGSATLSPETINLVLDPRFKSCCSSVCLNG 570
            +VG  SHS  NNDE K +Q   EE   + ELIRRNDTRWAS HAM+ R+L+L +A+VEYF +   ++R L   EW    +V S+LD  A    ++QG     + Q++ +   +    S     IR  D P++     K  +    L   T  +  V+   M ++ELG+A +  E I  +LDPR K C     +NG
Sbjct:  412 VVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNG 606
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BLAST of mRNA_P-littoralis_Contig122.93.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.060e-6
Identity = 41/125 (32.80%), Postives = 55/125 (44.00%), Query Frame = 1 
Query:  259 AAATAAQVQGGRHGFVGQSINDFFVLHHSVSAPDQDIR--------------------CLDPWDGPKTSVTTSQLQPLTRTLLTVMAEDMSERELGSATLSPETINLVLDPRFKSCCSSVCLNGG 573
            A A A   +  R  F+ +SI     LH S   P QDIR                           P  S   ++L P  + LL  +AE M E  LG A    E ++++LDPRFK CC+S C++GG
Sbjct:  550 AGAAARDKKKPRGIFLAESIELHANLHCSFIYPLQDIRGDALATAATGEGVAAAPAMVAAGAGAAPFCSKRVAELTPEAQALLEAVAEGMEESGLGRAREDTEAVSMLLDPRFKQCCASTCVDGG 674
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE3.540e-2536.92Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE6.280e-2536.92Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D7G031_ECTSI2.060e-632.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:290329..291257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size575
Hectar predicted targeting categoryother localisation
Exons2
Cds size573
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789527.9044013-CDS-P-littoralis_Contig122:290328..2904411680789527.9044013-CDS-P-littoralis_Contig122:290328..290441Pylaiella littoralis U1_48CDSP-littoralis_Contig122 290329..290441 +
1680789527.9174054-CDS-P-littoralis_Contig122:290797..2912571680789527.9174054-CDS-P-littoralis_Contig122:290797..291257Pylaiella littoralis U1_48CDSP-littoralis_Contig122 290798..291257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.93.1prot_P-littoralis_Contig122.93.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 290329..291257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.93.1

>prot_P-littoralis_Contig122.93.1 ID=prot_P-littoralis_Contig122.93.1|Name=mRNA_P-littoralis_Contig122.93.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=191bp
MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVL
RLYRALVEYFNRCGSDRALFPTEWQAVQQVVSVLDDAAATAAQVQGGRHG
FVGQSINDFFVLHHSVSAPDQDIRCLDPWDGPKTSVTTSQLQPLTRTLLT
VMAEDMSERELGSATLSPETINLVLDPRFKSCCSSVCLNGG
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mRNA from alignment at P-littoralis_Contig122:290329..291257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.93.1 ID=mRNA_P-littoralis_Contig122.93.1|Name=mRNA_P-littoralis_Contig122.93.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=929bp|location=Sequence derived from alignment at P-littoralis_Contig122:290329..291257+ (Pylaiella littoralis U1_48)
ATGGTTGGGCACTGCAGCCACAGTGTGTGCAACAACGACGAGTTCAAGAA
AGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTTGGAGCTCATCCGTC
GGAACGACACAAGGTGAGAGGTGCGCGAATGATGTGCGCAGGTTGTATTC
GGGATTTATTTTGTGTGTTCGTGTCGTCTCGACAACAGAAGGTCGAGGCA
GGCGCCGCCGCCCGCCAAGTATGCAGCAACTTGCTTTCGCTTATGGATTA
TTACAAAATCGCCGTGAGTTGCCACATATAAAAAGAAAAAATTAAAAAAA
TTGTAAAATGTCGTTCCTGTGGTGAACGAAGTTGGGAGCAAACGTTCCGG
GTCACTCGTTTAGACACGCAAACTGACGTGCCCTTCGCCCCCCCTCCCCG
AAGCAAGCACTAACTCGTTTGCAAACGAAATTGCCTCCCATCACCCGCCA
CGTTTTGAACGGTTCATAGGTGGGCTTCGCTGCATGCAATGCTCCAGCGC
GTGCTCAGGCTCTACAGAGCTCTCGTCGAGTACTTCAACCGGTGTGGGAG
CGACCGTGCTTTGTTCCCGACGGAGTGGCAAGCAGTGCAGCAGGTGGTGA
GCGTCCTCGACGACGCCGCTGCCACGGCGGCCCAGGTCCAGGGGGGTCGT
CATGGGTTTGTCGGCCAGTCCATCAACGACTTCTTCGTCCTGCACCACTC
GGTCAGCGCCCCAGACCAGGACATTCGATGCCTGGATCCCTGGGACGGCC
CCAAAACATCAGTCACCACGAGCCAGCTTCAACCGCTCACGCGGACACTA
CTGACGGTAATGGCGGAGGACATGTCCGAGAGGGAGCTGGGGTCTGCGAC
GCTGTCGCCCGAGACGATCAACCTGGTGCTCGATCCCCGCTTCAAGTCCT
GCTGCTCGAGCGTGTGCTTGAACGGGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig122:290329..291257+

>mRNA_P-littoralis_Contig122.93.1 ID=mRNA_P-littoralis_Contig122.93.1|Name=mRNA_P-littoralis_Contig122.93.1|organism=Pylaiella littoralis U1_48|type=CDS|length=573bp|location=Sequence derived from alignment at P-littoralis_Contig122:290329..291257+ (Pylaiella littoralis U1_48)
ATGGTTGGGCACTGCAGCCACAGTGTGTGCAACAACGACGAGTTCAAGAA
AGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTTGGAGCTCATCCGTC
GGAACGACACAAGGTGGGCTTCGCTGCATGCAATGCTCCAGCGCGTGCTC
AGGCTCTACAGAGCTCTCGTCGAGTACTTCAACCGGTGTGGGAGCGACCG
TGCTTTGTTCCCGACGGAGTGGCAAGCAGTGCAGCAGGTGGTGAGCGTCC
TCGACGACGCCGCTGCCACGGCGGCCCAGGTCCAGGGGGGTCGTCATGGG
TTTGTCGGCCAGTCCATCAACGACTTCTTCGTCCTGCACCACTCGGTCAG
CGCCCCAGACCAGGACATTCGATGCCTGGATCCCTGGGACGGCCCCAAAA
CATCAGTCACCACGAGCCAGCTTCAACCGCTCACGCGGACACTACTGACG
GTAATGGCGGAGGACATGTCCGAGAGGGAGCTGGGGTCTGCGACGCTGTC
GCCCGAGACGATCAACCTGGTGCTCGATCCCCGCTTCAAGTCCTGCTGCT
CGAGCGTGTGCTTGAACGGGGGC
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