mRNA_P-littoralis_Contig122.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.9.1
Unique NamemRNA_P-littoralis_Contig122.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig122.9.1 vs. uniprot
Match: A0A6H5KX32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX32_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 5.810e-27
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = 1 
Query: 1975 QGASVIQSVELKELSAKGRRTEVHDLVSVCRRCSGTVPLAMHCAFAREGKRCFLHGTEDEWAAEVAAGGERAKAAVRLNCYSSGAIRFPLAAQLAEA 2265
            QGASVIQSVELK+L+  GRRT V +LVS+CRRCS  V L +HCA AR+G+RCFLHGTE+E  A+VA GG   + A+RLN YSSGAIRFPLAAQ A+A
Sbjct:   10 QGASVIQSVELKDLNENGRRTVVQNLVSICRRCSEKVHLGLHCALARDGERCFLHGTENERKAKVAKGGTVKEEALRLNYYSSGAIRFPLAAQTADA 106
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BLAST of mRNA_P-littoralis_Contig122.9.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 8.750e-26
Identity = 83/244 (34.02%), Postives = 130/244 (53.28%), Query Frame = 1 
Query: 1885 PKYDIDGDWVTLTEIHASMDAGFRHRSKAAQGASVIQSVELKELSAKGRRTEVHDLVSVCRRCSGTVPLAMHCAFAREGKRCFLHGTEDEWAAEV----AAGGERAKAAVRL---NCYSSGAIRFPLAAQLAEAIGARLICLRTLLEGFWVSRISHDQDAQIGKLYK-IMYWARECLDRSHIAKNLKKNMAKYAKGNGDRTTRNFANAAVRSRQVWLDTGGEGNEYVWAEAFIEMFHHLAFHLQ 2592
            P Y ++GD V +T +  + D  +R+R+  A   +V+ S++L+E + +G R  V  +V+  R    ++ +   C  +R+G RC +HG   ++         A     +AA RL   NCYS   +  P +A   E++G +++ L  LLEG+  +  +HDQD  +G L + +   A ECLDRSH+ KNL K + K+  G   R +RNFA     SR+   +   E      AEAF+E F HL FHL+
Sbjct:  672 PGYKVEGDVVVVTPLEVAFDGSYRNRNHTAHSINVVCSLKLREQNNRGLRDAVFGMVTFGRHVGKSLQIDPVCVTSRQG-RCPVHGDAQDFKERAHPPATASASVREAAQRLRNSNCYSGTCLTSPHSAPGTESVGVQVLLLTQLLEGWLPTMFAHDQDVGLGLLVRQVTNDAWECLDRSHVQKNLVKAIVKFLPGFAPRVSRNFAYCVAASRKE--EEKCEDGSTSRAEAFVEGFAHLVFHLK 912
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX32_9PHAE5.810e-2769.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W2_9PHAE8.750e-2634.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:36012..41827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2594
Hectar predicted targeting categoryother localisation
Exons7
Cds size909
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.9.1prot_P-littoralis_Contig122.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 37252..39369 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789525.7040186-UTR-P-littoralis_Contig122:36011..362861680789525.7040186-UTR-P-littoralis_Contig122:36011..36286Pylaiella littoralis U1_48UTRP-littoralis_Contig122 36012..36286 +
1680789525.7169552-UTR-P-littoralis_Contig122:37226..372511680789525.7169552-UTR-P-littoralis_Contig122:37226..37251Pylaiella littoralis U1_48UTRP-littoralis_Contig122 37227..37251 +
1680789525.7546115-UTR-P-littoralis_Contig122:39369..399201680789525.7546115-UTR-P-littoralis_Contig122:39369..39920Pylaiella littoralis U1_48UTRP-littoralis_Contig122 39370..39920 +
1680789525.7655659-UTR-P-littoralis_Contig122:40186..403581680789525.7655659-UTR-P-littoralis_Contig122:40186..40358Pylaiella littoralis U1_48UTRP-littoralis_Contig122 40187..40358 +
1680789525.774052-UTR-P-littoralis_Contig122:40989..414661680789525.774052-UTR-P-littoralis_Contig122:40989..41466Pylaiella littoralis U1_48UTRP-littoralis_Contig122 40990..41466 +
1680789525.7849026-UTR-P-littoralis_Contig122:41642..418271680789525.7849026-UTR-P-littoralis_Contig122:41642..41827Pylaiella littoralis U1_48UTRP-littoralis_Contig122 41643..41827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789525.7260969-CDS-P-littoralis_Contig122:37251..375411680789525.7260969-CDS-P-littoralis_Contig122:37251..37541Pylaiella littoralis U1_48CDSP-littoralis_Contig122 37252..37541 +
1680789525.7340033-CDS-P-littoralis_Contig122:37706..383171680789525.7340033-CDS-P-littoralis_Contig122:37706..38317Pylaiella littoralis U1_48CDSP-littoralis_Contig122 37707..38317 +
1680789525.7465436-CDS-P-littoralis_Contig122:39361..393691680789525.7465436-CDS-P-littoralis_Contig122:39361..39369Pylaiella littoralis U1_48CDSP-littoralis_Contig122 39362..39369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.9.1

>prot_P-littoralis_Contig122.9.1 ID=prot_P-littoralis_Contig122.9.1|Name=mRNA_P-littoralis_Contig122.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=303bp
MQMMMCTPTFGHYLTLRQLSSFLDVPAADLKAVLLAQGVDAAVHDMFLKV
FGIHKDTHGTGSGTSACWHLMGCGHLFTLQEADCMHLLSTHPQPTFWKAR
MWVHDGIEYFFEGCGPSVVLQIGNLNKDMARELQCRNCAGKRQQDWEWMR
IESEATAVLRSKPHGELGAKFECVSCESIHIAVPLPSKSHTDGKRWTMDD
KAVQLVHSSIADWASRAAAVPRRKTNVMTSSAHESYSPGPVQVAAMATVA
VAGVGMEGSGEAAARADDVVREAAQAGGLPLPLSVPPRANNLQGVESFRS
RD*
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mRNA from alignment at P-littoralis_Contig122:36012..41827+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.9.1 ID=mRNA_P-littoralis_Contig122.9.1|Name=mRNA_P-littoralis_Contig122.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5816bp|location=Sequence derived from alignment at P-littoralis_Contig122:36012..41827+ (Pylaiella littoralis U1_48)
GGCGTGTATCGACGCCTTGGTAGACAGAGACCACCTAGGGTTTGGTGGCT
TGCGTTTTGTGGAGAGGGGAACCCTGCCCCAGATATTAGCCCTCCACGGG
ACTTCGGCGAAAGGGGAGACGATGGTATTGCTGGAGAGGATGCCGTAGAT
GAGGATCGGAGTGCCGCTTCTCATGAGGAGGAGACGTACGCGTCCGGCGG
TCTCGCCAGAGCACGAGATGAGGAAGGAAGTGCTGTCGCTGCTGGGGAGG
AAGTTACCGATAAAGTTCGCCGAAGGTGCGGTCCTTCGAAATGGTTCGAT
TTTAGTTTATGATTGACAAGTCTGTCCTGCGTTGGCAGTTATGGTACGTT
GAAGTACGCTTTCGTGTCCGTTATTTAGGTAAGGGTAGAGCTTTCCCTCT
AGTATCAAGTACTTGTGGTATAGCCGGAGACAGCGAGAGACATTGCCGTA
TGATAGGATTAGTAAAATACGAGACCTGCTGAGGCGATTTTAAATCACGA
ATACTCCCCACCGAAAAGATAACCATCAAACGATTGTATACTTAGGGTTG
ATATGTTTCTAACGCACCCTTTACGGCACCTACACATGTAATGAATCGTG
CTTTATAAATCGGCCCAGGGGGTTCCGTCGTATCTTACGGCACCCACGGT
AAACACGCGTCGCGCCGCCACACACAACACGCTGTAGAGCTGTCTTATAC
TGCACTACTGCTGCTGTACTTCTGCTACTGCTACTGCGCTGCTGTACTGC
TGCTGCTGCTACTGCGCTGCTGCTGCTGTACTGCTGCTGCTGCTACTGAG
CTGCCGTTGCTGGTGTACTGCTGCTGCTGCTACTTCGCTGCTGGTGCTGC
TGTACTGTTGCTGGTGCTGAGATGTGTAGTGATGCATCATCTCGAAGTAT
CATACTCTCAATCGAGAAGGAAAGTATAGCAGTAGCACAGCTACAACAAC
ACAACAACAGCAAGACAAGGGCGATGCGTGTGCGGCAGGCTGCGGCGTGA
TGTGTAAATTATGTGATGCGATATTTTAACACGAAAACAGGTGGTATTAT
CACCACATGCAGGCGTCAACATCAGTAGTAGTACAGCTTACGGCGGGAAC
GGACTGCAGACATGCATACATCGGATCACAGCTGTGCGTATGTAGTTACC
CTCCGTACCCCCCTCTAAACTCTGGCCCGCCGCTGCCGGTTATCGCTATA
ACATGTGACGCTCAGGGTGGCTTGGGTCCGTGGTGCCGCCATGCAGATGA
TGATGTGCACTCCAACGTTCGGCCACTACCTGACCTTGAGGCAGCTGTCG
AGTTTCCTTGATGTTCCTGCCGCGGATCTGAAGGCCGTATTGCTTGCGCA
AGGGGTGGACGCAGCAGTTCACGACATGTTCTTGAAGGTGTTCGGCATCC
ACAAAGACACGCACGGCACCGGCAGCGGTACTTCGGCTTGTTGGCACCTG
ATGGGATGTGGGCATCTCTTCACGCTACAGGAAGCAGACTGCATGCATCT
CCTGAGCACCCATCCCCAACCTACTTTCTGGTTAGTATCCGTTGGCAGGA
GGCCTAGTAACGTCGACTTCCTACACAAATTGTTTTATTCCGTCGGCTGG
GTGTGACTTTGGGGGCGCAGAATTTGCTGCCATGCCGTTGTGTGACATGT
ACCACTTGGTTTCCGTCTCCTACGTTGTGTTGCATGTTTCTACAGGAAGG
CGCGAATGTGGGTACACGACGGCATAGAATATTTCTTCGAAGGATGCGGG
CCGAGCGTGGTTCTTCAAATCGGCAACCTCAACAAAGACATGGCAAGAGA
ACTGCAGTGTAGGAATTGTGCTGGTAAACGGCAGCAGGACTGGGAGTGGA
TGCGTATAGAGTCGGAGGCTACCGCTGTGTTGCGGTCGAAACCACATGGC
GAGCTTGGGGCCAAGTTTGAGTGTGTTTCTTGCGAGTCTATTCATATCGC
AGTGCCATTACCCAGCAAGTCGCATACCGACGGCAAGCGATGGACGATGG
ACGACAAAGCCGTGCAACTGGTTCACTCGTCAATCGCGGATTGGGCAAGT
CGAGCAGCAGCGGTTCCACGTAGAAAAACTAACGTCATGACGTCCAGCGC
CCACGAATCTTACTCTCCCGGCCCTGTGCAAGTCGCCGCTATGGCGACGG
TGGCTGTCGCTGGCGTAGGGATGGAAGGCTCGGGGGAAGCAGCAGCCAGG
GCTGACGATGTTGTAAGGGAAGCAGCGCAGGCGGGCGGACTGCCGCTGCC
GCTGAGCGTGCCGCCAAGGGCAAACAACCTGCAAGGGGTGGAAAGCTTCC
GAAGCAGTGAGTCCGTGTGACCCCGTTGAGCGCGGGCCGTGGCACATTGC
CGTCATAGCTATATAGGGTGTAGACAAATTATTATTTTTGCGTTGTTATT
GTGAGATACATCCAATGACACCGTTGTTTGCCACTTTGTTGTGGATAGAT
ACCAAAGAACCGCCATTTGTTTTGTAGTGGATACATAATATCATAACCGT
TCGTGAAAATTGTTTCTGTCACGAAGATGGGCAAAATAATACCGCTCACT
GTTTTTTGTTTGTAGTGGATAGATGAGACCGCCCTGTCCATGCGTGTGGG
TGTCACCCAAATAATTGGATGCTACACCGGTAGACGCTCCAACCGGGGCC
ACACAGTAGGAAGTGAACACATAAGTTTTTTTTTCCTCCACTTCCCACTG
CGGTACTTGCCTTAAGTTTTTATCGCGAGAAAAGGTACAGCCATCCCTTT
TCCTCGTCGACACTTCGAATGTTTGTTTACTCACGAATTACTCGCTTTCC
ACCCTCACGAATGACATAAGAAAAATCCCAGATCATGTTACTGCACCGGG
TTTCGAACTCAAGTACTGTTTTTATTGTTGTACGAGTAGATAGTTTTTAT
TGTGGCGGATGGAATCAAACACATGGTGTTTTTTTTGTATTGTGTGATCA
CACCGTGCTTGTACTGTTTGCTAAGACTAGGATTGAACAAATGACGTGTA
TAATTTTTTGAAGTGGGTAGATAAAAACCCCGTCGCTATAACTCCAACGT
TCTTGTACTTTTTTTTTCACATATCAGGTGTACATGAAACCATACCCATC
GTGTATGGTACATCGTTTCTTTGCTTGATGGATACAGTAACACTGCTGTT
ATTGTACTTTAGTTTTTTAGTGGGAGTGGGGGGACAGACTTACACTGGTC
TTGTATTGTACATCGGTAACATGTAAGTGTTCACCAGCCTATATCCCCCC
CAACCTTTTTTAACCCTTTCCGTCCCCTCGGCCCTTCTCCCACCCCCTTC
CCTCCTCTACCCCCTCTCGCCTTAAACAATGTCTGATGGGACTGGAACAG
GAGACTGAGTTCAACCACGGTTACGAGAGTGGATGATGATCGAGCGTTGG
CTGACGTAGGTACAGTCGATGCCAAGCCGCAGCGCACATACGCCTGCGTT
GAGACTGATTTCCTGAATCTCGCAGCTCAAGTACATACGGCAGACACGGG
TTGCGACGGTCCGTTGACGACCGACGGACCAACGTCGGAGAGAAGCACTG
CTGTGAACTTTCAATGTCGATGCCGCGGTTGTGGTGCTGATTTCGGGAGG
TTGCGCATTGGGGGCACCAGTACGATATCGACTGTTCTCGGTATTTTGCT
GGCCGGGAGTAGTTTCACGGCATGGTCTGCATCTCGCAAGTACAGTGACG
AGAAGGTGATGGGTGAAGCGACTTTCATGAAACACCAGAAAACAGTTCTT
CGTCACGTAGATAGCTTGTTTGAGGAGCACCTCAAGTCCAGCAACGAGAA
GCTTCAGTCCGACCCCAGGCGCAAGATTCGAGTCCTCACTTCCCAGCACT
ACTTCCTTAAAAACAAGGACCGTTTTCTGAAGAAGATGGAGGGCAAGTTC
GGCCTACAGGTGTGAAGTGCTGTATGTCAATGATTGCCCGCGGGGTACGG
GTGTGGGCATAAACATGTTCGTAAAAATGACAGCCATCATCTGCTTGGGT
TGCTTGGGTTGCTTGGGTTGTTGGCTGATATACGCAAAGTCCTGTCAGCG
TCTTGTCAGCGTGGGCGCGTTTAGGTGGACCAATCCTCACAACACCCCCC
CCCCCCCCCGTGCCCTCCCCCGCCGCCCCCCCGCGCAACCCTCCTCGTTT
TTACGTCCTTTGTCAAAAATTCCAGGGCGAGGGCAAGTCGCAGCGAGGGG
AAAACCTAGACGAAGAAGAGATGGCTGTCAATCTCTTGAGAGTGCTGAAG
GAGGTTTACGTGCAGAACGGGGGGGACTGGCGGCGTCGATGAATGGTTTC
CCAAGTACGACATCGACGGCGACTGGGTGACGCTCACCGAAATACATGTG
AGCATGGTTATGCTTGTGTGGATCTTGCTCGTGCAGACGCCGAACTCTGG
TATCTATCTTCAGTTCTCGCGTTCATTTTAATCGGCCTTGATGCCTTGAT
GCCGCCCCCCCCCCCCCCAACGACCCCCGACCACATGTTTTTTCCGGTGC
ATTTCCCCAGCGCGTTTGTTTTGTACTTGGTTTATCTTGCGGGATTGAAC
AAGCCGTTTTCATTTGGCACTCCAACTAGAGTGTAAACCGTGAATGACTG
CATGCAGGCATTAATCTGCCATCAAATGTTGAATTATTAAGTTGTTTTTG
CGGGCGTGTGCAGTCAGCGTTTTGGTGCTTTTTACTCCCCGGCAAGATTT
CCCCCCTTGGGAATCTTAAAAACGAAATTGCCTATGACAACCCATGAAAG
GATTAACCCCCGGGGTCTGTTGTTCCAGACAACATACAACGAAAAAACGT
ACACAGCCCCATAGTTTCTGTGTCGATTTTGTAGGAGTAGGCTCTGTTCT
CCGGCTGTTTCCAAAAGCGTGGGTCAATGTGCCAGATGAACTAACACGTG
CACAAATAACCCCCGCCTCCTCGCAATATCTTTCGCCCTCTCCCTCACTC
GCCCACCCGCCTGCGCACCACCCGTTAGGCTTCGATGGACGCGGGGTTTC
GCCACAGGTCGAAGGCTGCCCAAGGAGCCAGCGTCATACAGTCTGTGGAG
TTGAAAGAGCTGAGCGCAAAAGGTAGACGGACAGAAGTGCACGACCTGGT
CAGCGTATGCCGCCGCTGCAGTGGCACAGTGCCCCTTGCTATGCACTGCG
CGTTCGCTCGCGAGGGCAAGAGGTGCTTTCTTCACGGGACGGAGGACGAG
TGGGCGGCCGAGGTGGCCGCGGGCGGCGAGCGGGCGAAGGCAGCAGTCCG
GCTCAACTGCTATAGTAGCGGAGCTATTCGCTTCCCACTCGCCGCGCAGT
TGGCGGAAGCTATAGGGGCGAGGTTGATATGCTTGCGAACACTTCTGGAG
GGATTCTGGGTATCTCGAATCTCACACGACCAAGACGCTCAGATCGGAAA
ATTATACAAGATCATGTACTGGGCTCGAGAATGCTTGGATCGTTCCCACA
TCGCGGTACGTGCCATGGTATGCCACGTGCTGTTGCTTGTCCGTGCAACG
TGACTGCGAGTGGCCCCGTAGAACGTGGGGTGTCTAACACAATGGCAATG
CGTTTGTCTCGGCAGCCGTTTAATGTATTATCGCCCTTTGCCTGTCGGTC
CTGTTCTGTTGTTACCCGGAACCTGCAACAGAAAAATCTGAAGAAGAACA
TGGCCAAGTACGCGAAAGGAAACGGCGACCGGACGACGCGAAATTTTGCC
AACGCCGCCGTGCGCTCCCGCCAGGTGTGGCTCGATACCGGAGGCGAGGG
AAACGAGTACGTGTGGGCGGAGGCATTTATCGAGATGTTTCACCACCTGG
CGTTCCACCTACAAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig122:36012..41827+

>mRNA_P-littoralis_Contig122.9.1 ID=mRNA_P-littoralis_Contig122.9.1|Name=mRNA_P-littoralis_Contig122.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=909bp|location=Sequence derived from alignment at P-littoralis_Contig122:36012..41827+ (Pylaiella littoralis U1_48)
ATGCAGATGATGATGTGCACTCCAACGTTCGGCCACTACCTGACCTTGAG
GCAGCTGTCGAGTTTCCTTGATGTTCCTGCCGCGGATCTGAAGGCCGTAT
TGCTTGCGCAAGGGGTGGACGCAGCAGTTCACGACATGTTCTTGAAGGTG
TTCGGCATCCACAAAGACACGCACGGCACCGGCAGCGGTACTTCGGCTTG
TTGGCACCTGATGGGATGTGGGCATCTCTTCACGCTACAGGAAGCAGACT
GCATGCATCTCCTGAGCACCCATCCCCAACCTACTTTCTGGAAGGCGCGA
ATGTGGGTACACGACGGCATAGAATATTTCTTCGAAGGATGCGGGCCGAG
CGTGGTTCTTCAAATCGGCAACCTCAACAAAGACATGGCAAGAGAACTGC
AGTGTAGGAATTGTGCTGGTAAACGGCAGCAGGACTGGGAGTGGATGCGT
ATAGAGTCGGAGGCTACCGCTGTGTTGCGGTCGAAACCACATGGCGAGCT
TGGGGCCAAGTTTGAGTGTGTTTCTTGCGAGTCTATTCATATCGCAGTGC
CATTACCCAGCAAGTCGCATACCGACGGCAAGCGATGGACGATGGACGAC
AAAGCCGTGCAACTGGTTCACTCGTCAATCGCGGATTGGGCAAGTCGAGC
AGCAGCGGTTCCACGTAGAAAAACTAACGTCATGACGTCCAGCGCCCACG
AATCTTACTCTCCCGGCCCTGTGCAAGTCGCCGCTATGGCGACGGTGGCT
GTCGCTGGCGTAGGGATGGAAGGCTCGGGGGAAGCAGCAGCCAGGGCTGA
CGATGTTGTAAGGGAAGCAGCGCAGGCGGGCGGACTGCCGCTGCCGCTGA
GCGTGCCGCCAAGGGCAAACAACCTGCAAGGGGTGGAAAGCTTCCGAAGC
AGAGACTGA
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