mRNA_P-littoralis_Contig122.8.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig122.8.1 vs. uniprot
Match: A0A6H5KX32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX32_9PHAE) HSP 1 Score: 505 bits (1301), Expect = 1.590e-160 Identity = 344/796 (43.22%), Postives = 426/796 (53.52%), Query Frame = 1
Query: 526 SACGPCSPVFGSHDQDAHIGSIFRVLYNPQECFDCAHIAKNLKK-NIAKFATGNGDRSVRNFAHAVVRARTLWLDAGGKKDEWVWAAAFIEFFMHLAFHLQGNHSCCSVECSGADQYTMPADDPDAEILSNAPTRGIDFFKEAMGVT-----DCSEVVEGEEHGER----------SENGGWDTASFEGTASAGGAADALGVEVASSPPGDEEEDTASLTDGAADAXXXXXXXXXXXXXXXXXXXXXXXXXXVEAVRPPVQKKAAPKVTLKACLGSAQTSPSLRKTVGVCTEPFARKKVAFHAASLQTLAAQEEALNGAAAAPGTSEACD------------------------------ELTNVIRAVEAICLRGKALTESTLEAVDDAVRAMNP--TKAQRDKLVVPTGDLKWEARSGLGEIMLSDAGQRREDMVHAPAKLILTTEIRAHMTVYVQAVKLVVQAEEAVFKKTGKRIMVSSSHIRQENTGTLRHLAWRESGPSASYSPCANKAGENVATKRRCPACAVQTLVNTACLRAFCFCVVIGTNALESFNGSIAAMVSKRSDFFVSHVGRAQLALLKRCYPGGYSAVVARLRADCGLPPLTERAARDTLLHQRKAGQLLSGATVWTSEEVKAASAKKLKAKSQRSTTQTIEGKLLKAANEARYAAHNTHRDQAGKSAVEGETLAEDSSGKTGKKRKRGGAAPSGLSTYDRGGSSSSRNLDESMVKPAKKARAKGMCRACVAFGVSGPWLLGEGHARASARKCPQVQQQWSEVGKPEAHPYTPNSPTASQA 2769
S C CS + H+G + + + CF H +N +K +AK T + N+ + L A D W+WA FIEFF HL FHLQGN S EC G+D+Y MP DDPD E+L N P+ G+DFF+EA G D + GE+ ER SE D A G +GGA GV+ GD D + G A V K APKVTL C+ SAQT PSL KT+ VC + RKK FH A QT A+ +A + A S L IR VE +CL G+ + + TLEAVDD V + +K QR K +PT L+ LG I +S+ G +RE+MVHAPA L+LTT I+A M YV+AV V + E AVF TG RIMV SSH+ Q+NTGTLRH+AWRESGP +SPCAN+AG N++TKR+CPACA Q LVNTACLRAF FC+VIGTNALESFNGS+AAMVSKRSDF++SHVGRAQLALLKRC+PGGY VV R+R CGLPPLT RA +TL+HQRKA L +G VW+S V+ S KLK K +RS QT G LKAANE A +++ ED + K G A +GL +YDRGGS++SRNL+E MV PAK+ R G C+ C FGV WL H+RA+ +C + Q+ G+PE TP S T S A
Sbjct: 37 SICRRCS-------EKVHLGLHCALARDGERCF--LHGTENERKAKVAKGGTVKEEALRLNYYSSGAIRFPL---AAQTADAWLWAETFIEFFCHLPFHLQGNRDFVSEECLGSDKYVMPRDDPDGEMLLNTPSEGVDFFEEATGAGGGGAGDNEREIGGEQGEERAGRDEAGEGSSEESDDDDALHAGLVESGGA----GVK------GDVTLDESPQGGGVAG----------------------------------VSSKGAPKVTLGDCVKSAQTVPSLLKTLEVCKVLYVRKKETFHHAFQQTRQARNDAFDRGPAESWASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLLEAIRLVETVCLEGRQVVDDTLEAVDDGVLELTKIKSKVQRQKQSIPTPSLRLPEE--LGYIFISEPGCKREEMVHAPAALVLTTRIKALMVRYVEAVVQVAKEEAAVFVMTGVRIMVVSSHLGQDNTGTLRHMAWRESGPWTFFSPCANEAGVNMSTKRKCPACAEQVLVNTACLRAFSFCLVIGTNALESFNGSVAAMVSKRSDFYISHVGRAQLALLKRCFPGGYREVVRRIRKACGLPPLTNRAEEETLVHQRKARHLEAGHEVWSSAAVRVGSDSKLKRKHRRSLVQTKHGAELKAANEKSQAELY-------------KSVGEDKRARA----KGGDAGANGLLSYDRGGSNASRNLNEGMVAPAKRKRTSGACKECGKFGVPAFWLAQRQHSRAAKTRCAKEQRLRVAAGRPETLLSTPPSRTGSPA 757
BLAST of mRNA_P-littoralis_Contig122.8.1 vs. uniprot
Match: A0A6H5JYT6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT6_9PHAE) HSP 1 Score: 391 bits (1005), Expect = 2.670e-121 Identity = 258/548 (47.08%), Postives = 308/548 (56.20%), Query Frame = 1
Query: 877 MPADDPDAEILSNAPTRGIDFFKEAMGVT-----DCSEVVEGEEHGER----------SENGGWDTASFEGTASAGGAADALGVEVASSPPGDEEEDTASLTDGAADAXXXXXXXXXXXXXXXXXXXXXXXXXXVEAVRPPVQKKAAPKVTLKACLGSAQTSPSLRKTVGVCTEPFARKKVAFHAASLQTLAAQEEALNGAAAAPGTSE------------------------------ACDELTNVIRAVEAICLRGKALTESTLEAVDDAVRAMNP--TKAQRDKLVVPTGDLKWEARSGLGEIMLSDAGQRREDMVHAPAKLILTTEIRAHMTVYVQAVKLVVQAEEAVFKKTGKRIMVSSSHIRQENTGTLRHLAWRESGPSASYSPCANKAGENVATKRRCPACAVQTLVNTACLRAFCFCVVIGTNALESFNGSIAAMVSKRSDFFVSHVGRAQLALLKRCYPGGYSAVVARLRADCGLPPLTERAARDTLLHQRKAGQLLSGATVWTSEEVKAASAKKLKAKSQRSTTQTIEGKLLKAANE 2379
MP DDPD E+L N P+ G+DFF+EA G D + GE+ ER SE D A G +GGA GV+ GD D + G A V K APKVTL C+ SAQT PSL KT+ VC + RKK FH A QT A+ +A + A G S A L I VE +CL G+ + + TLEAVDD V + +K QR K +PT L+ LG I +S+ G +RE+MVHAPA L+LTT I+A M YV+AV V + E AVF TG RIMV SS + Q NTGTLRH+AWRESGP +SPCAN+AG N++TKR+CPACA Q LVNTACLRAF FC+VIGTNALESFNGS+AAMVSKRSDF++SHVGRAQLALLKRC+PGGY VV R+R CGLPPLT RA +TL+HQRKA L +G VW+S V+A S KLK K +RS QT G LKAANE
Sbjct: 1 MPRDDPDGEMLLNTPSEGVDFFEEATGAGGGGAGDNEREIGGEQGEERAGRDEAGEGSSEESDDDDALHAGLVESGGA----GVK------GDVTLDESPQGGGVAG----------------------------------VSSKGAPKVTLGDCVKSAQTVPSLLKTLEVCKVLYVRKKETFHHAFQQTRQARNDAFDRGPAESGASXXXXXXXXXXXXXXXXXXXXXXXXXXXGVSAAFGRLLEAIHLVETVCLEGRQVVDDTLEAVDDGVLELTKIKSKVQRQKQSIPTPSLRLPEE--LGYIFISEPGCKREEMVHAPAALVLTTRIKALMVRYVEAVVQVAKEETAVFVMTGLRIMVVSSLLGQGNTGTLRHMAWRESGPWTFFSPCANEAGVNMSTKRKCPACAEQVLVNTACLRAFSFCLVIGTNALESFNGSVAAMVSKRSDFYISHVGRAQLALLKRCFPGGYREVVRRIRKACGLPPLTNRAEEETLVHQRKARHLKAGHEVWSSAAVRAGSDSKLKRKHRRSLVQTKHGAELKAANE 502
BLAST of mRNA_P-littoralis_Contig122.8.1 vs. uniprot
Match: A0A6H5KGM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGM5_9PHAE) HSP 1 Score: 241 bits (616), Expect = 1.020e-70 Identity = 116/151 (76.82%), Postives = 132/151 (87.42%), Query Frame = 1
Query: 1801 TGKRIMVSSSHIRQENTGTLRHLAWRESGPSASYSPCANKAGENVATKRRCPACAVQTLVNTACLRAFCFCVVIGTNALESFNGSIAAMVSKRSDFFVSHVGRAQLALLKRCYPGGYSAVVARLRADCGLPPLTERAARDTLLHQRKAGQL 2253
TG RIMV SSH+ Q+NTGTLRH+AWRESGP +SPCAN+AG N++TKR+CPACAVQ LVNTACLRAF FC+VIGTNALESFNGS+AAMVSKRSDF++SHVGRAQLALLKRC+PGGY VV R+R CGLPPLT RA +TL+HQRKA L
Sbjct: 2 TGVRIMVVSSHLGQDNTGTLRHMAWRESGPWTFFSPCANEAGVNMSTKRKCPACAVQVLVNTACLRAFSFCLVIGTNALESFNGSVAAMVSKRSDFYISHVGRAQLALLKRCFPGGYREVVRRIRKACGLPPLTNRAEEETLVHQRKARHL 152
BLAST of mRNA_P-littoralis_Contig122.8.1 vs. uniprot
Match: A0A6H5JRT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT7_9PHAE) HSP 1 Score: 107 bits (268), Expect = 1.810e-21 Identity = 99/338 (29.29%), Postives = 159/338 (47.04%), Query Frame = 1
Query: 1750 VQAVKLVVQAEEAVFKKTGKRIMVSSSHIRQENTGTLRHLAWRESGPSASYSPCANKAGENVATKRRCPACAVQTLVNTACLRAFCFCVVIGTNALESFNGSIAAMVSKRSDFFVSHVGRAQLALLKRCYPGGYSAVVARLRADCGLPPLTERAARDTLLHQRKAGQLLSGATVWTSEEVKAASAKKLKAKSQRSTTQTIEGKLLKAANEARYAAHNTHRDQAGKSAVEG--------------ETLAED--SSGKTGKKRKRGGAAPSGLSTYDRGGSSSSRN--LDESMVKPAKKARAKGMCRACVAFGVSGPWLLGEGHARASARKCPQVQQQWS 2709
+ A + + +AE+A + G + V Q ++RH AW ES A +S C N G N+ + C C T AC+R+ F +GT LES NGSIA+ SKR+DF ++H RAQ+A++ R G V +R + LP L+ AA+ H+RK ++ T ++ K +A + K+ +S + K L AA+ A H + ++V G + A+D ++G GK ++ AA + L Y GS +S+N + + KKAR +C C A GV +L + H R + C +V+++W+
Sbjct: 4 IAAARQISEAEKAFRQAIGTTLFVQVMGSSQIEKSSVRHQAWGESRDWAFFSHCCNSLGGNIRSTHPCGPCDSHTAFAVACIRSTAFMPDLGTQFLESVNGSIASKASKRNDFPLTHWPRAQIAVMNRTLRCGTLGVANLIREELRLPILSAPAAKVVSDHERKNTRVSLTGEYQTDDQKKQRTADRYTTKADKSRLIAV-WKGLSAADVAENEIHPSGFGAVDLASVRGKFDAITGDDKGPGKDGRAQDGGTAGGKGKGSRKRSAALACLPDYTAAGSDTSKNAIVLADVRTGGKKAR---VCAECTAAGVGLQFLADKQHQRKGQKICRKVREEWA 337
BLAST of mRNA_P-littoralis_Contig122.8.1 vs. uniprot
Match: A0A6H5JHD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD0_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 6.630e-18 Identity = 83/249 (33.33%), Postives = 123/249 (49.40%), Query Frame = 1
Query: 2020 IGTNALESFNGSIAAMVSKRSDFFVSHVGRAQLALLKRCYPGGYSAVVARLRADCGLPPLTERAARDTLLHQRKAGQLLSGATVWTSEEVKAASAKKLKAKSQRSTTQTIEGKLLKAANEARYAAHN--------THRDQA--GKSAVEGETLAEDSSGKTGK----------KRKRGGAAPSGLSTYDRGGSSSSRNLDESMVKPAKKARAKGMCRACVAFGVSGPWLLGEGHARASARKCPQVQQQW 2706
+GTN LES NG+IAA +KRSDF +H RAQ+A++ R + G V +R+ GLPPLT RAA R+ +++ G T E+ AS + K K R TTQT K AN + A N TH A K A EGE + + G++G+ +++ GG A + Y+ GGS++ N + + G+C +C+ GV +L+ HAR A+ C + ++QW
Sbjct: 4 LGTNFLESMNGTIAAKATKRSDFNRTHWSRAQIAMMNRTHDDGPVGVANLVRSHMGLPPLTNRAAEKMEARDRRGKKVVVGQLHRTEEQRTKASTDRYKNKD-RVTTQTAANK----ANHDKRAKENKILPYGYGTHGVAALRKKLAAEGEDVEGTADGESGRTSXXXXXXXXRKEAGGTA---IPEYNAGGSNTDNNDKLAADVRMGGTKTGGVCSSCLEAGVGRQFLVDAQHARKGAKICSRTREQW 244
BLAST of mRNA_P-littoralis_Contig122.8.1 vs. uniprot
Match: A0A6H5JHR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR1_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 2.050e-15 Identity = 53/115 (46.09%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 559 SHDQDAHIGSIFRVLYNPQ-ECFDCAHIAKNLKKNIAKFATGNGDRSVRNFAHAVVRARTLWLDAGGKKDEWVWAAAFIEFFMHLAFHLQGNHSCCSVECSGADQYTMPADDPDA 900
+HDQDA IG I R L++ EC D AHI KN+KK I KFA+G R+ R FA V AR + D A AF E F HL FHLQG H CS C+GA+++ ++P A
Sbjct: 211 AHDQDAGIGHIVRGLFDDALECLDRAHIQKNMKKAIVKFASGYASRACRYFAWVVREAREVVERC--VDDSITLAEAFTEGFAHLVFHLQGVHKYCSSGCAGAEEHVAEGEEPRA 323
BLAST of mRNA_P-littoralis_Contig122.8.1 vs. uniprot
Match: A0A6H5JU55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU55_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 4.460e-15 Identity = 53/115 (46.09%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 559 SHDQDAHIGSIFRVLYNPQ-ECFDCAHIAKNLKKNIAKFATGNGDRSVRNFAHAVVRARTLWLDAGGKKDEWVWAAAFIEFFMHLAFHLQGNHSCCSVECSGADQYTMPADDPDA 900
+HDQDA IG I R L++ EC D AHI KN+KK I KFA+G R+ R FA V AR + D A AF E F HL FHLQG H CS C+GA+++ ++P A
Sbjct: 878 AHDQDAGIGHIVRGLFDDALECLDRAHIQKNMKKAIVKFASGYASRACRYFAWVVREAREVVERC--VDDSITLAEAFTEGFAHLVFHLQGVHKYCSSGCAGAEEHVAEGEEPRA 990
BLAST of mRNA_P-littoralis_Contig122.8.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 4.860e-9 Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 1
Query: 1951 CPACAVQTLVNTACLRAFCFCVVIGTNALESFNGSIAAMVSKRSDFFVSHVGRAQLALLKRCYPGGYSAVVARLRADCGLPPLTERAAR 2217
C C + AC+RA F +GT LES NGSIAA +KR DF V+H RAQ+A++ R PGG V +R + LP LT AA+
Sbjct: 1113 CGTCDSHVAFSVACIRAPAFMPDLGTQFLESVNGSIAAKATKRCDFPVTHYPRAQIAVMNRTLPGGAEEVANLIREEMALPRLTPPAAK 1201 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig122.8.1 >prot_P-littoralis_Contig122.8.1 ID=prot_P-littoralis_Contig122.8.1|Name=mRNA_P-littoralis_Contig122.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=789bp MHLAFHLQGNHSCCSVECSGADQYTMPADDPDAEILSNAPTRGIDFFKEAback to top mRNA from alignment at P-littoralis_Contig122:24117..34534- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig122.8.1 ID=mRNA_P-littoralis_Contig122.8.1|Name=mRNA_P-littoralis_Contig122.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10418bp|location=Sequence derived from alignment at P-littoralis_Contig122:24117..34534- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig122:24117..34534- >mRNA_P-littoralis_Contig122.8.1 ID=mRNA_P-littoralis_Contig122.8.1|Name=mRNA_P-littoralis_Contig122.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2367bp|location=Sequence derived from alignment at P-littoralis_Contig122:24117..34534- (Pylaiella littoralis U1_48)back to top |