mRNA_P-littoralis_Contig122.72.3 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig122.72.3 vs. uniprot
Match: D8LLI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI9_ECTSI) HSP 1 Score: 985 bits (2546), Expect = 0.000e+0 Identity = 671/1158 (57.94%), Postives = 768/1158 (66.32%), Query Frame = 1
Query: 1 HSVFPMGDLGKHAPNFGDLGKPTVTVDVLRLQAELRALHQRIEFLELAAAVEAEERARE-DHDRSSGSS------GPGVAGGGSRAAQADDVSLTDSLTVEPQ-GEPPPSPLFRSATTGSRKKNGAVNAALQSELRELSETVEALAASSKRREKAAALTEKATGLSRSMEIKRIQAMSEPCILILAIESRVTSDDLQLAVNATDNKLVAMQSSVDSALSDRFRRMQNVVHEQASKTAMASLLSMVQALIQQQGKSSHGRGSHVPRGGSMXXXXXXXXXXXXXXXXXDA-DREAFDKAVTNIVHRVLREEN-KKERGAGDVKMVAFESLQEDYETFKGYMEEKADRQDAISFALEEAQARLEHTDASLSALTEEVEHSSQDIRGAMDTASDRQSDLDTRVRAVASLAADANGECAVIRSLVVESRRETQAEARQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAEDEAEGYQGAIAGTRALSEKAVAGAAAXAAKAEEGGVLLQRAETRMGQRLGEAVQNQTAVAEDTLERIAAGESELARAESELKRLLDNNGAEIEVLRTGQKQLRESAEQATDDLKGEVQHALSTMII-MDQVRAPAF----------AGGSGGXXXXXGTRGGGVSFKHHTGXXXXXXXXXXXXXXXXXXXXXSSNLDLPSLGLAIRRQNQDAAHQVLTLQRSGVGIVTVLRKMEAAVQTLSTKDLFWKAVDTKLTAHQRAVGDVCLQVEDATVAKRSRITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLEGPEQTGQDWDERVEFLRQTQMRRFMNDCRDALDKTAPEARTNFNGEEIRGKFLGKLSDALRVALSKYSPTTPGATLFGKIKLKAKACLACDRPFTPSATGRPGPTPPGGISGAAVEPDGLPEENSHITKDTFRPHTSHGRLDSPSRSASLELFEPQHTSIHSVMSGGRGSPESPHVYRGGFKLPKHLKSPLHLPDGEDGSAFGIGHASPLLHKCPSMTGLSCYNDVHTKGRPSTSGGMRRKGRPPSK---NTPSPPATAVGGRTMGMGQDGGGSVISAFTVRTDYAKGSVGGGDGMDGMLTGFGDNGGGWDGGEYGRDILHTAGRRDSGEDPAADGPGPLPRPYYATSNTLSRPSTPHDGSVRLLT 3402
+SV+PMG APNF DLGKPTVTVDV RLQAELRALHQR+EFLE+AA V A E A++ D D S SS AG +R + D + D LT E + GE P SP+ RSAT G RKK A +AA+Q+E+R+LS+ +EALA+S KRREKA + EK L++SMEIKRIQ +AIESRVTSDDLQLAV+A D+K+VA+QSSV+SALSDRFRRMQ+VVH+Q MASLLSMVQ L Q Q + G G +V G++ XXXXXXXXXXXX A + E F+KAV + V RVL+E G GDVKM FESLQEDY EKADRQDAIS +LE+AQ +A+LSAL EE+EHSSQD CA +R LV +SRRE QA+ARQ XXXXXXXXXXXXXXXX ++EDEAEG+QGA+AGTRALSEKA+AGA A AA+A+E LLQ+AETRMG+RL +AVQNQT EDTLER+AAGESELARAESEL+RL+ +NGAEI LRTGQ L ES+EQAT+ L+ EVQ AL+TM+I D + +P+ G XX +RGG V F+ G + L L LG A+RRQ +DAA V TLQRS VGIVTVLRKMEA V LSTKDLFWKAVD KL AHQRAVG+VCL VEDATV++RSRITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKL+ PEQTGQDWDERVEFLRQTQMRRF+ DCRDALDKTAPE RTNFNGEEIRGKF+GKLSDAL+VALSKYSPTTPGATLFGKIKLK NSHITKDTFRPHTSHGRL SPSRS S+ELFEP H+SIHSVMSG R S SPHVYRGGFKLPKHLKSPLHLPDGED SAFGIGHASPLLHK SMTGL +N+ GRPSTSGG+R+K RPP+ +T SPPAT G G+ GG S+ISAFT RT+YA + + GE G + L +DP P PY+ATS+T SRP HDGSVRLLT
Sbjct: 9 YSVYPMGAAKAAAPNFSDLGKPTVTVDVTRLQAELRALHQRLEFLEVAAQVAAVEHAKDQDPDGGSASSTAESIPSAVAAGRETRPDELDGGCIADDLTTETKAGEMPHSPVMRSAT-GLRKKAAAASAAMQAEVRDLSDRLEALASSCKRREKAQGIREKTNALAQSMEIKRIQ---------MAIESRVTSDDLQLAVSAADDKIVAVQSSVESALSDRFRRMQDVVHQQ-----MASLLSMVQGLTQSQARRK-GSGPYVNARGNLSGGGYXXXXXXXXXXXXXASEAETFNKAVKDAVERVLQEGRISGGSGQGDVKMADFESLQEDYXXXXXXXXEKADRQDAISSSLEDAQXXXXXXEANLSALAEELEHSSQDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAALRLLVGDSRREGQADARQEAEAITARAXXXXXXXXXXXXXXXXSATEKVGSELKRHIKKSEDEAEGFQGAVAGTRALSEKAMAGATAAAARADECDALLQKAETRMGKRLDKAVQNQTTAIEDTLERVAAGESELARAESELRRLIASNGAEIMDLRTGQSVLGESSEQATEQLREEVQDALTTMVIDQDFIDSPSSXXXXXXXXXRTGXXXXXXGSDNSRGG-VRFEASHGGGSGNNYRSNDFVDRSASDV--ARLSLAHLGTALRRQGEDAAQMVSTLQRSSVGIVTVLRKMEAGVHALSTKDLFWKAVDVKLAAHQRAVGEVCLDVEDATVSRRSRITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLDTPEQTGQDWDERVEFLRQTQMRRFLKDCRDALDKTAPEVRTNFNGEEIRGKFMGKLSDALKVALSKYSPTTPGATLFGKIKLK----------------------------------------NSHITKDTFRPHTSHGRLGSPSRSGSIELFEP-HSSIHSVMSGSRSSSHSPHVYRGGFKLPKHLKSPLHLPDGEDQSAFGIGHASPLLHKSQSMTGLGSHNN---NGRPSTSGGVRQKRRPPNAGKFHTSSPPATGDGDPDAGLQDGGGNSIISAFTARTEYAAATP--------------------NAGESGAERLGF-------DDP----PAGTSMPYFATSHTPSRPGVQHDGSVRLLT 1072
BLAST of mRNA_P-littoralis_Contig122.72.3 vs. uniprot
Match: A0A836CLL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL5_9STRA) HSP 1 Score: 200 bits (508), Expect = 4.110e-48 Identity = 137/334 (41.02%), Postives = 177/334 (52.99%), Query Frame = 1
Query: 1978 IRRQNQDAAHQVLTLQRSGVGIVTVLRKMEAAVQTLSTKDLFWKAVDTKLTAHQRAVGDVCLQVEDATV------------------AKRSRITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLEGPEQTGQDWDERVEFLRQTQMRRFMNDCRDALDKTAPEARTNFNGEEIRGKFLGKLSDALRVALSKYSPTTPGATLFGKIKLKAKACLACDRPFTPSATGRPGPT--PPGGISGAAVEPDGLPEENSHITKDTFRPHT--------SHGRLDSPSRSASLELFEPQHTS------IHSVMSGGRGSPESP--HVYRGGFKLPKH 2871
+R + A + LQRSGV LR++E A Q+L++K LFW++ D KL AH V V LQVE A A L+ +A LAG+ QRVAKL+A KADYEVIR +++ E P G DWD RVE LR + +F D R+ L K AP E RG+FL ++ ALRVALSKY PTTPGATLFG++++ A+AC+ACDRPF +A G P PPGG + AA +P LP E S ++ FRP T S G ++ +E P H + + P +VYRGGFKLPKH
Sbjct: 699 LRAHAAEGADALEALQRSGVANALALRRVETAFQSLASKGLFWESTDIKLAAHVEEVARVSLQVEAAAXXXXXXXXXXXXXXXXXXSAPPGAPHLAPDALRVLAGNTQRVAKLIAAKADYEVIRLVSRAEDPGAEGHDWDARVETLRGAFLAQFSADARNVLRKRAPHQGPA--AEAARGRFLARVDGALRVALSKYRPTTPGATLFGRVRVVAQACVACDRPFATAADGLPCAVSAPPGG-NHAAAKPPALPTETSIAVRNNFRPSTCTGSPTKRSGGGVEVNGDDGDVESEVPLHVAPFGFGXXXXXXXXXXSDVQKPQAYVYRGGFKLPKH 1029
BLAST of mRNA_P-littoralis_Contig122.72.3 vs. uniprot
Match: A0A7S3USE9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE9_HETAK) HSP 1 Score: 142 bits (358), Expect = 4.780e-34 Identity = 92/234 (39.32%), Postives = 136/234 (58.12%), Query Frame = 1
Query: 1969 GLA-IRRQNQDAAHQVLTLQRSGVGIVTVLRKMEAAVQTLSTKDLFWKAVDTKLTAHQRAVGDVCLQVEDATVAKRSRITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLEGPEQTGQDWDERVEFLRQTQMRRFMNDCRDALDKTAPEARTNFNGEEI----RGKFLGKLSDALRVALSKYSPTTPGATLFGKIKLKAKACLACDRPFTPSATGRPGPTPPGGISGAA 2655
GLA +RR+ + A +RS VG+ + R+ E V+ +++K LFW+A+ +L AH + GD C ++E + A + +LS EAQ LAG+ QRVAKL+ +AD+E IR+++ PE +DWD +V+ LRQ F A A+ + +G+ + R +FL KL A+R+ALSK++ PG TLFGK + AC+ACDRPFT PGP G++GAA
Sbjct: 20 GLAELRRRARAAEESCGRTERSSVGLAALCRQAEGQVRAIASKSLFWEALQARLQAHLKGFGDRCCELEANSSAAHA-FSLSPEAQRYLAGNAQRVAKLVGQRADFETIRQVSTSRHPED--EDWDTKVDQLRQKYRAEFTQGVE------AYAAKQHRSGDTVVLDTRRRFLAKLDQAVRLALSKFNKVQPGLTLFGKRSAQVPACMACDRPFTSD----PGP----GLAGAA 236
BLAST of mRNA_P-littoralis_Contig122.72.3 vs. uniprot
Match: D8LS35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS35_ECTSI) HSP 1 Score: 105 bits (262), Expect = 4.010e-19 Identity = 65/175 (37.14%), Postives = 101/175 (57.71%), Query Frame = 1
Query: 1975 AIRRQNQDAAHQVLTLQRSGVGIVTVLRKMEAAVQTLSTKDLFWKAVDTKLTAHQRAVGDVCLQVEDATVAKRSRITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLEGPEQTGQDWDERVEFLRQTQMRRFMNDCRDALDKTAPEARTNFNGEEIRGKFLGKLSDALRV 2499
A+R Q Q ++R+ + + +++K+E ++ LS++DLFW+ V TKL AH A D +VE AT ++ R L+ E Q +AG+ QRVAKL+ KAD+EVI++L E+ QDWD RV+ +R + + F+ + R LD+ P + F G R +F KL L+V
Sbjct: 548 AVREQQQRREESSRRVERANLSLTLLVKKLERSLFVLSSRDLFWEEVGTKLKAHAEAFADASCRVE-ATSEEQDRFVLTVELQQYIAGNTQRVAKLICQKADFEVIQKLTASTNIEKGAQDWDRRVQSMRGSFLEHFVANARRYLDRKYP-SHGPF-GARNRDRFFVKLEQGLKV 719
BLAST of mRNA_P-littoralis_Contig122.72.3 vs. uniprot
Match: W7TB27_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TB27_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 3.120e-14 Identity = 66/225 (29.33%), Postives = 111/225 (49.33%), Query Frame = 1
Query: 1957 LPSLGLAIRRQNQDAAHQVLTLQRSGVGIVTVLRKMEAAVQTLSTKDLFWKAVDTKLTAHQRAVGDVCLQV----------EDATVAKRSR-ITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLEGPEQTGQDWDERVEFLRQTQMRRFMNDCRDALDKTAPEARTNFNGEEIRGKFLGKLSDALRVALSKYSPTTPGATLFGKIKLKAKA-CLACDRPF 2595
+P L + Q ++ Q+L L++ G+ ++ +VQ L T+ W A+D +L + ++ C + D + + R + L KE +A R+AK +A+KADY++IR + + T D ++ R+T + RF+ + A++ EI +F KL A+R+ALSK+S G +LFGKI L+A+A CLAC+R F
Sbjct: 74 IPDLLTQLDVQRTESTDQLLRLEQDIEGLSGSYEQLHGSVQALVTRSNHWAALDVRLQEYHESLVKHCRHIFARSSLSSYGPDQVLQLQGRGLLLKKETVDLIASHSYRIAKTIALKADYDIIRHNVESKDT-LTDNQCDAKILQSRETYLMRFLGGVKRAVEVGLDGEGRASGITEIITQFHSKLEQAIRLALSKFSRIHTGRSLFGKISLEAEAACLACNRQF 297 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.72.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig122.72.3 >prot_P-littoralis_Contig122.72.3 ID=prot_P-littoralis_Contig122.72.3|Name=mRNA_P-littoralis_Contig122.72.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1130bp MGDLGKHAPNFGDLGKPTVTVDVLRLQAELRALHQRIEFLELAAAVEAEEback to top mRNA from alignment at P-littoralis_Contig122:257201..276927- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig122.72.3 ID=mRNA_P-littoralis_Contig122.72.3|Name=mRNA_P-littoralis_Contig122.72.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=19727bp|location=Sequence derived from alignment at P-littoralis_Contig122:257201..276927- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig122:257201..276927- >mRNA_P-littoralis_Contig122.72.3 ID=mRNA_P-littoralis_Contig122.72.3|Name=mRNA_P-littoralis_Contig122.72.3|organism=Pylaiella littoralis U1_48|type=CDS|length=3390bp|location=Sequence derived from alignment at P-littoralis_Contig122:257201..276927- (Pylaiella littoralis U1_48)back to top |