mRNA_P-littoralis_Contig122.6.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 105 bits (263), Expect = 1.080e-23 Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 1
Query: 1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMDMDV 252
D WL GD+++ WE LTAS+RR+L+TQWV E +KI+ D +YR RLFEKTG MTADGS D+ INLEGV G +FMD DV
Sbjct: 1721 DSWLEHGDNLQQWEDGSLTASERRVLLTQWVAEVIEKINADQ--QYRSRLFEKTGTGMTADGSGDERINLEGVSGPLNFMDADV 1802
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5L6W3_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6W3_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 1.530e-20 Identity = 46/87 (52.87%), Postives = 61/87 (70.11%), Query Frame = 1
Query: 1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMDMDVTPE 261
DKWL + D++E WE+ LTAS RR+LITQW G A K++ + G YR RLFEK G+AMT DGS DD I LEG++ ++F + D + E
Sbjct: 134 DKWLDQSDNIERWETASLTASDRRVLITQWTGAAVAKLNSNQG--YRHRLFEKCGMAMTVDGSGDDRITLEGLDQPYTFPNDDDSSE 218
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 3.100e-20 Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSF 237
D WL + D++E WESN LTAS RR+LITQWVG A +++D EYR RLFEK G+AMT DGS DD I LEG++ ++F
Sbjct: 504 DMWLEQADNIERWESNSLTASDRRVLITQWVGAAMEELD--SREEYRFRLFEKCGMAMTVDGSGDDRITLEGLDKPYTF 580
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5KH13_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH13_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.080e-19 Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSF 237
DKWL + D++E WE+ LTAS RR+LITQW G A K++ + G YR RLFEK G+AMT DGS DD I LEG++ ++F
Sbjct: 321 DKWLDQSDNIERWETASLTASDRRVLITQWTGAAMAKLNSNQG--YRHRLFEKCGMAMTVDGSGDDRITLEGLDQPYTF 397
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5JKG3_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG3_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.460e-19 Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSF 237
DKWL + D++E WE+ LTAS RR+LITQW G A K++ + G YR RLFEK G+AMT DGS DD I LEG++ ++F
Sbjct: 483 DKWLDQSDNIERWETASLTASDRRVLITQWTGAAMAKLNSNQG--YRHRLFEKCGMAMTVDGSGDDRITLEGLDQPYTF 559
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5JFX9_9PHAE (C2H2-type domain-containing protein n=15 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX9_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.510e-19 Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSF 237
DKWL + D++E WE+ LTAS RR+LITQW G A K++ + G YR RLFEK G+AMT DGS DD I LEG++ ++F
Sbjct: 665 DKWLDQSDNIERWETASLTASDRRVLITQWTGAAMAKLNSNQG--YRHRLFEKCGMAMTVDGSGDDRITLEGLDQPYTF 741
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5JXP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXP4_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 2.560e-19 Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMD 243
D WL + D++E WE+ LTAS RR+LITQW+G A ++++ YR RLFEK G+AMT DGS DD I LEG++ ++F D
Sbjct: 54 DIWLEQSDNLERWETASLTASNRRVLITQWMGAAMARLNIQQA--YRYRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFAD 132
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5KDV1_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV1_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 6.850e-19 Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSF 237
DKWL + +++E WE+ LTAS RR+LITQW G A K++ + G YR RLFEK G+AMT DGS DD I LEG++ ++F
Sbjct: 551 DKWLDQSNNIERWETASLTASDRRVLITQWTGAAMAKLNSNQG--YRHRLFEKCGMAMTVDGSGDDRITLEGLDQPYTF 627
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5KZ92_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ92_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 1.670e-18 Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSF 237
DKWL + D +E WE+ LTAS RR+LITQW G A K++ + G YR R FEK G+AMT DGS DD I LEG++ ++F
Sbjct: 511 DKWLDQSDKIERWETASLTASDRRVLITQWTGAAMAKLNSNQG--YRHRRFEKCGMAMTVDGSGDDRITLEGLDQPYTF 587
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5KE05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE05_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 3.730e-18 Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSF 237
D WL + D++E WE+ LTAS RR+LITQW+G A +++ YR RLFEK G+AMT GS DD I LEG+E ++F
Sbjct: 2 DIWLEQSDNLERWETASLTASDRRVLITQWMGAAMARLNSQQA--YRYRLFEKCGMAMTVAGSGDDRITLEGLEKPYTF 78 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig122.6.1 >prot_P-littoralis_Contig122.6.1 ID=prot_P-littoralis_Contig122.6.1|Name=mRNA_P-littoralis_Contig122.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=145bp DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLback to top mRNA from alignment at P-littoralis_Contig122:22414..22849+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig122.6.1 ID=mRNA_P-littoralis_Contig122.6.1|Name=mRNA_P-littoralis_Contig122.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=436bp|location=Sequence derived from alignment at P-littoralis_Contig122:22414..22849+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig122:22414..22849+ >mRNA_P-littoralis_Contig122.6.1 ID=mRNA_P-littoralis_Contig122.6.1|Name=mRNA_P-littoralis_Contig122.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=435bp|location=Sequence derived from alignment at P-littoralis_Contig122:22414..22849+ (Pylaiella littoralis U1_48)back to top |