mRNA_P-littoralis_Contig122.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.6.1
Unique NamemRNA_P-littoralis_Contig122.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.080e-23
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMDMDV 252
            D WL  GD+++ WE   LTAS+RR+L+TQWV E  +KI+ D   +YR RLFEKTG  MTADGS D+ INLEGV G  +FMD DV
Sbjct: 1721 DSWLEHGDNLQQWEDGSLTASERRVLLTQWVAEVIEKINADQ--QYRSRLFEKTGTGMTADGSGDERINLEGVSGPLNFMDADV 1802          
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5L6W3_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6W3_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.530e-20
Identity = 46/87 (52.87%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMDMDVTPE 261
            DKWL + D++E WE+  LTAS RR+LITQW G A  K++ + G  YR RLFEK G+AMT DGS DD I LEG++  ++F + D + E
Sbjct:  134 DKWLDQSDNIERWETASLTASDRRVLITQWTGAAVAKLNSNQG--YRHRLFEKCGMAMTVDGSGDDRITLEGLDQPYTFPNDDDSSE 218          
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.100e-20
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSF 237
            D WL + D++E WESN LTAS RR+LITQWVG A +++D     EYR RLFEK G+AMT DGS DD I LEG++  ++F
Sbjct:  504 DMWLEQADNIERWESNSLTASDRRVLITQWVGAAMEELD--SREEYRFRLFEKCGMAMTVDGSGDDRITLEGLDKPYTF 580          
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5KH13_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH13_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.080e-19
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSF 237
            DKWL + D++E WE+  LTAS RR+LITQW G A  K++ + G  YR RLFEK G+AMT DGS DD I LEG++  ++F
Sbjct:  321 DKWLDQSDNIERWETASLTASDRRVLITQWTGAAMAKLNSNQG--YRHRLFEKCGMAMTVDGSGDDRITLEGLDQPYTF 397          
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5JKG3_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG3_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.460e-19
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSF 237
            DKWL + D++E WE+  LTAS RR+LITQW G A  K++ + G  YR RLFEK G+AMT DGS DD I LEG++  ++F
Sbjct:  483 DKWLDQSDNIERWETASLTASDRRVLITQWTGAAMAKLNSNQG--YRHRLFEKCGMAMTVDGSGDDRITLEGLDQPYTF 559          
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5JFX9_9PHAE (C2H2-type domain-containing protein n=15 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX9_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.510e-19
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSF 237
            DKWL + D++E WE+  LTAS RR+LITQW G A  K++ + G  YR RLFEK G+AMT DGS DD I LEG++  ++F
Sbjct:  665 DKWLDQSDNIERWETASLTASDRRVLITQWTGAAMAKLNSNQG--YRHRLFEKCGMAMTVDGSGDDRITLEGLDQPYTF 741          
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5JXP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXP4_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.560e-19
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMD 243
            D WL + D++E WE+  LTAS RR+LITQW+G A  ++++     YR RLFEK G+AMT DGS DD I LEG++  ++F D
Sbjct:   54 DIWLEQSDNLERWETASLTASNRRVLITQWMGAAMARLNIQQA--YRYRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFAD 132          
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5KDV1_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV1_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.850e-19
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSF 237
            DKWL + +++E WE+  LTAS RR+LITQW G A  K++ + G  YR RLFEK G+AMT DGS DD I LEG++  ++F
Sbjct:  551 DKWLDQSNNIERWETASLTASDRRVLITQWTGAAMAKLNSNQG--YRHRLFEKCGMAMTVDGSGDDRITLEGLDQPYTF 627          
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5KZ92_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ92_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.670e-18
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSF 237
            DKWL + D +E WE+  LTAS RR+LITQW G A  K++ + G  YR R FEK G+AMT DGS DD I LEG++  ++F
Sbjct:  511 DKWLDQSDKIERWETASLTASDRRVLITQWTGAAMAKLNSNQG--YRHRRFEKCGMAMTVDGSGDDRITLEGLDQPYTF 587          
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Match: A0A6H5KE05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE05_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.730e-18
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSF 237
            D WL + D++E WE+  LTAS RR+LITQW+G A  +++      YR RLFEK G+AMT  GS DD I LEG+E  ++F
Sbjct:    2 DIWLEQSDNLERWETASLTASDRRVLITQWMGAAMARLNSQQA--YRYRLFEKCGMAMTVAGSGDDRITLEGLEKPYTF 78          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE1.080e-2359.52Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L6W3_9PHAE1.530e-2052.87DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LRF1_ECTSI3.100e-2058.23C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KH13_9PHAE1.080e-1955.70DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JKG3_9PHAE1.460e-1955.70DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JFX9_9PHAE1.510e-1955.70C2H2-type domain-containing protein n=15 Tax=Ectoc... [more]
A0A6H5JXP4_9PHAE2.560e-1951.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDV1_9PHAE6.850e-1954.43C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KZ92_9PHAE1.670e-1854.43DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KE05_9PHAE3.730e-1851.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:22414..22849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRF1
PFAMsDDE_1
Model size437
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.08e-21
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789525.3961248-CDS-P-littoralis_Contig122:22413..228481680789525.3961248-CDS-P-littoralis_Contig122:22413..22848Pylaiella littoralis U1_48CDSP-littoralis_Contig122 22414..22848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.6.1prot_P-littoralis_Contig122.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 22414..22848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.6.1

>prot_P-littoralis_Contig122.6.1 ID=prot_P-littoralis_Contig122.6.1|Name=mRNA_P-littoralis_Contig122.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=145bp
DKWLLEGDHVELWESNKLTASQRRILITQWVGEAAKKIDVDMGVEYRRRL
FEKTGLAMTADGSDDDLINLEGVEGVFSFMDMDVTPEPLEDVLPVPPAPA
DEEHPGGSSDEDDDSDGEEGGGGGTHDDLATIDIDDDLDKGEEPL
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mRNA from alignment at P-littoralis_Contig122:22414..22849+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.6.1 ID=mRNA_P-littoralis_Contig122.6.1|Name=mRNA_P-littoralis_Contig122.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=436bp|location=Sequence derived from alignment at P-littoralis_Contig122:22414..22849+ (Pylaiella littoralis U1_48)
GACAAGTGGCTGCTGGAGGGGGATCACGTAGAGTTGTGGGAGTCGAACAA GCTGACTGCATCGCAGCGAAGGATTTTGATCACGCAATGGGTAGGTGAAG CAGCGAAGAAGATCGACGTTGACATGGGCGTCGAGTACCGCCGTCGCCTT TTCGAGAAGACTGGCTTGGCGATGACCGCTGACGGCAGCGATGACGACCT CATCAACCTCGAAGGTGTCGAGGGCGTGTTCTCCTTCATGGACATGGACG TCACCCCGGAGCCGCTGGAGGATGTGCTTCCGGTGCCACCTGCTCCTGCC GACGAGGAACACCCCGGCGGTTCAAGCGACGAGGACGACGATTCGGATGG GGAGGAGGGGGGTGGAGGCGGTACGCACGACGACCTGGCGACGATAGACA TCGACGATGATCTCGACAAAGGCGAGGAGCCCTTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig122:22414..22849+

>mRNA_P-littoralis_Contig122.6.1 ID=mRNA_P-littoralis_Contig122.6.1|Name=mRNA_P-littoralis_Contig122.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=435bp|location=Sequence derived from alignment at P-littoralis_Contig122:22414..22849+ (Pylaiella littoralis U1_48)
GACAAGTGGCTGCTGGAGGGGGATCACGTAGAGTTGTGGGAGTCGAACAA
GCTGACTGCATCGCAGCGAAGGATTTTGATCACGCAATGGGTAGGTGAAG
CAGCGAAGAAGATCGACGTTGACATGGGCGTCGAGTACCGCCGTCGCCTT
TTCGAGAAGACTGGCTTGGCGATGACCGCTGACGGCAGCGATGACGACCT
CATCAACCTCGAAGGTGTCGAGGGCGTGTTCTCCTTCATGGACATGGACG
TCACCCCGGAGCCGCTGGAGGATGTGCTTCCGGTGCCACCTGCTCCTGCC
GACGAGGAACACCCCGGCGGTTCAAGCGACGAGGACGACGATTCGGATGG
GGAGGAGGGGGGTGGAGGCGGTACGCACGACGACCTGGCGACGATAGACA
TCGACGATGATCTCGACAAAGGCGAGGAGCCCTTG
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