mRNA_P-littoralis_Contig122.41.397 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig122.41.397 vs. uniprot
Match: D8LLI4_ECTSI (SEN1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI4_ECTSI) HSP 1 Score: 1483 bits (3838), Expect = 0.000e+0 Identity = 1057/1992 (53.06%), Postives = 1214/1992 (60.94%), Query Frame = 2
Query: 254 MDVEVISVDDDDGESN-EEGXXXXXXXXXXXXDDDFEIFSQEKVRYQNDDGNSPNSSNAETSPSFGEAAANTAT--IDLTMTAPETA-QDFEQEYDALRRNAQGFMFPFESVSELLLRHSEHWWCRYTDAMTEMLLSLEGGLEDET---HAIRYDEATLRIDSPLISPLHHATGVSIVWQQSSLQLSSCKRCLRCYHAAKERVILRLLSDEERPVDIKRLTTTILEQDSKRLQRSFRSAQKAPAPTSASAIMKVGSRPTATGVAIGQVPEAG--SVAAMVTASASLAPGMNANHAFWEVLSYSQLLEDSGIQDAFVAALARVTSSGADIFSGEEWNQHWPGVLTLLVHKDASVRAWAQLMARRAGKIRAKEYVEVLSPVIDQWVPVLEQGLIGSG-QPVAAVSERGEE-ERLHWSGLHVALQLLEPSAGRLVANGFQTLVDLALQKFDNGPGH--ISLYLQVCGCLASLLRLLGAGIWDYSSRQPSEVLEAFERQIRHEGDDSVLFGVVGAGGRTLRPPNEAIHKKVLEMLPLLVSSVARECSSSQRVGGGMSGDVPYGSGESLGEGREESGMMVGGRDDGPIAADSFSLADEALGFLSRDVALLSAL--DANHGANRRRKMALARTLLDVLEICYNGTSSGGGGASGHSNDAENHDGDPLSPESWPWNSAATGRADHA--VSSSWWHPSWPVRSVPLWGPRLADIAGDRSSRSSGGTSESGSTSGGGALVVDRAARVVELVLRQHSRAAWRKTLATLR----PRTLDSGSAAQKSGGVTRKEAEDKGEVLPLCGPLLERICLELPLMDLPVRVHAAVFEAHGWLSLLPCVGDSAIRAAENRCGPQASRSLAQLHSGMISQFLKLFVPYVEGLTKTVKSRGASVSPALLPQVVPHIFQALLAAVPAARAALEELLLCSVVSDRRFGDAREVFKKGDLRPVLARLPLDCARACFLAVPQALGAMAAAGPHLTLKSWSPLFQAVGVLGCAVLLPPTSGFSDPRRRGGEGDDEEY-DNELWGALEGVWEFIFLQVLPEALPALREQHATRLEDAIRALFGSLESLWPLLTGPVPRSRRPQLADDFYRSRSLWLQPLLAWVSEAWLPLPAREAAAGFVQRALLPLLHSSSRAPPAGAASGKGADQSVFDHQGVSAAASPKSKTRQLRLMGAKLCAVEEEQGRGEGGNGDEFGSEAEEAKILQALESAASAATTT-VAVDPSPVQAAPEGSPEVPWVGLGPSEPTNPFVRTAVPLPGAVRSRERGGSSVASEGWSSTPWQQRLGVASSS-PHLTSAGGASSRPSSSQ-SVRSPPAAPASRFRNEIVRSSA----AGEARRDRQRSAVELSPEELPNHQQIDRSSAVGGAQGSRNQTASSARRREEKLSSISVQMGSWAGSNSATVVAAVKANSTVGSS-GADDGKEYANTAEAAAYVSRAEEVVA------------ARPRGSVVERWREMQRKQMEETQEPASVGSQKGPHQVDQRAQARLSTDAAKAIAPARPETVASHSAAXXXXXXXXXXXXXXXXXXXXGGAKAREPV---ERPVDYTSLAEASSMELHRLVLSTWTIPELLAAPMKSAR-----QGASEGQD--RRWLSSLWLPKVPTRFQSAEQYVDIFRGLLLEEIFATLGAALKGGGEXXXXXXXXRPSEAATLSVESFVETGKEGFSHITMVASDGSSRGGGRQDQGAGGVMAGYFPRFVHDDVLLLSLVERS----GGNDDSLDGSA---NIACLGIFDKEPRGSARGAAGPPGRERSSIRAKVFFRPSAAADRRRDESSNVEKGS---IPKKVTPASPENGEDRREEDGPAGAILRAFREPGTLVRVTRLEGLSTSTREFVALEATPTRGYLLHHLLQATSNPRLLPVPPAALR-PRNNNTNSPNP-RTTLGPPYPVDEASFTDTCKRLSSVEGS-LLGVSGGGDRTAGNRRPSGRGEDERPEGRHPDSGGISGVDKTVPTDLLMRSLGCLASFR 6034
MDVEVISVD ESN EEG D EIFSQE+ D AE P E + AT IDLT E A FEQEYD L R+AQGF FPFE+V+ELLLRH EHWWCRY DAM EMLLSL+GG E E + D +T DS TGV IVWQ SLQLS+CKRCLR YHAAKE V+ RLLS+EERP + +RL +LE D RLQRSFRS KAPA A + GS ATG + V + A TAS+S G++ AFWEVLSYSQLLED GI+ AF+AAL++VTSSG +FSGEEWNQHWPGVLTLLVH++AS RAWAQ MARRAG IRAKEYVEVLSPVID+WVPVLE+GL G P A+ S+ + ERLHWSGLHVALQLLEPSA L+A GF TLVDLALQKFD+GPG +SLYLQVCGCL++LLRLLGA +W+YSSRQPSEVLEA ERQ + GD + G G R L PNEAI KKV EMLPLLVSS A S G G YG+ + +G G + G+ DD AA +AD L FLSR++A LSA+ + N GA+ RR+MALA+ LL VLE CYNG++ GG + D D L PESWPWN+ S +W +PSWPVRSVP WGPRLADIAGDRS R+SG ++ VVDRAARVV+LVLR+H AAWR L+ LR + SGSA+Q SG + ED+ V+PLCGPLLERICLELPLMDLPVRVHAAVFEAHGWLSLLPC G SAIRAAE R GP ASR LA LHSGM+SQF++LFVPYV+GLT+ VK+RGA LLAAVP ARAALEEL+ SV SD ++GDLRP+L R P DCARACF AVPQALGAMAAAGPHL+LKSWSPLFQAVGVLGCAVLLP S ++ELW LE VWEFIFLQV+PEALPALREQHATRLE+A RALFGSLESLWPLLTGP + RRP+L D FYRSRSLWLQPLL+WVS AWLP AREAAA FVQR+LLP LH+SS G+A+G G ++ S SP+ + +RL+G KL AVE GEG + SE EA +L AL+SAA AAT AVDP AA G+ + P NPF +A R GGSS AS GWS TPW+ RLGV +S+ P SAG S + +Q + SP AAP R +R + AG R S G + + S R EK +S +V SNS + VGSS GA K Y AEAA ARPRGSVVERWREMQR+QM ET E + +Q+R XXXXXXXXXXXXXX GG + +DY SLAEAS+ ELH+LVLS+WT+PEL AA KSAR QG G + R SSLWL KVPTRFQS EQY+++FRGLLL+EIFATL AAL GGG XXXXXXXX P EA TL V S VE GK GF HITMVA DG G RF HDDVLLLSL + S GG S DG + ACLG+F+KEPRG+ARG AG PG RSS+RAKV FR +A DR R+ S+ +E+G+ IPKK T S G+ + EE+ A A+LRAFRE G+ VRVTRLEGLSTSTREFVALEA+P R LLHH+LQATS P L P+ R P N+ T++ N T L PPY VDEASF D CKRLSSVE S LLG SG G G P D P + LMRSLGCLASFR
Sbjct: 1 MDVEVISVDGQSDESNLEEGELG-----------DEEIFSQEQPAQGEQD--------AEIPPQQQEQQHDLATDTIDLTAAGCEAAISRFEQEYDDLHRSAQGFGFPFEAVAELLLRHPEHWWCRYPDAMAEMLLSLDGGCESEGLPYAPVTSDTSTTSSDS--------LTGVGIVWQTVSLQLSTCKRCLRRYHAAKETVLARLLSEEERPAETQRLEAAVLEHDRDRLQRSFRSTGKAPAGIPARSD-GAGSGTVATGQGLAGVDGEACKTTGAAATASSSFPLGVDGTLAFWEVLSYSQLLEDGGIEGAFLAALSQVTSSGEGVFSGEEWNQHWPGVLTLLVHREASTRAWAQSMARRAGGIRAKEYVEVLSPVIDRWVPVLERGLSSGGAHPTASGSDPDSDGERLHWSGLHVALQLLEPSAAPLLAYGFPTLVDLALQKFDDGPGPRGVSLYLQVCGCLSALLRLLGAEMWEYSSRQPSEVLEALERQTSY-GDGADTADFRGTGRRML--PNEAIQKKVFEMLPLLVSSAAAVDRPSGATGWGT---AVYGN-QGIGGGTDHPGVAARHIDDAAAAAGVLPVADAVLSFLSREIASLSAVAPENNRGAHGRRQMALAKALLGVLETCYNGSAGGG---------ESDDDSDLLEPESWPWNAXXXXXXXXXXXTSGAWCYPSWPVRSVPSWGPRLADIAGDRSGRASGESTA--------VAVVDRAARVVQLVLREHGGAAWRAALSALRLPPSASSSGSGSASQSSGRM-----EDEECVVPLCGPLLERICLELPLMDLPVRVHAAVFEAHGWLSLLPC-GHSAIRAAEGRGGPAASRVLAALHSGMMSQFVRLFVPYVQGLTEIVKNRGA-----------------LLAAVPTARAALEELVSRSVFSDGG--------RRGDLRPLLGRFPPDCARACFQAVPQALGAMAAAGPHLSLKSWSPLFQAVGVLGCAVLLPKASAADGXXXXXXXXXXXXXXEDELWEVLEAVWEFIFLQVIPEALPALREQHATRLEEAFRALFGSLESLWPLLTGPAAQRRRPRLTDGFYRSRSLWLQPLLSWVSAAWLPRVAREAAAIFVQRSLLPFLHASS----CGSAAGGGDERGARGDDDPSVGVSPR---KTVRLVGDKLRAVE-----GEGRSAWALSSEEPEADLLAALKSAAVAATAKGTAVDPCSPPAATGGAAXXXXXXXXXAAPRNPFALSAA-------RRGNGGSSAAS-GWSRTPWEDRLGVGNSATPSSESAGRPLSESALAQITYSSPAAAPERTARTPGLRRGSHYPKAGGNDXXXXXXXXXXXXXXXXXXXXXFRDSR--GRSTAASTEGGSLGVRPEKTASRAV-------SNSTA-----NDDDEVGSSSGARGRKTYVTAAEAAXXXXXXXXXXXXXXXXXXXXXXXARPRGSVVERWREMQRRQMGETTEVVAS--------APAASQSRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGDSPDGGNGSLATTVAGAATLDYASLAEASATELHKLVLSSWTVPELFAASTKSARSGGRFQGPKRGHEVGRSSSSSLWLSKVPTRFQSVEQYLEVFRGLLLDEIFATLVAALDGGGSXXXXXXXXXPPEAMTLRVASLVEGGKGGFGHITMVADDGG----------------GSSHRFAHDDVLLLSLAKPSDGAVGGGHVSGDGGSAATTTACLGLFEKEPRGAARGPAGMPGSGRSSVRAKVLFRSTAPGDRGRNRST-IERGAGAIIPKKATAES--RGQGQGEEEA-ASAVLRAFRELGSQVRVTRLEGLSTSTREFVALEASP-RAALLHHILQATSEPSLQPLQETPQRAPGNSTTSNDNLWATKLAPPYLVDEASFADACKRLSSVEDSALLGESGAG-------------------GGSPAIAAGLAADIAGPAESLMRSLGCLASFR 1827
BLAST of mRNA_P-littoralis_Contig122.41.397 vs. uniprot
Match: D8LLI3_ECTSI (Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI) HSP 1 Score: 899 bits (2322), Expect = 6.600e-284 Identity = 617/1129 (54.65%), Postives = 697/1129 (61.74%), Query Frame = 2
Query: 6377 KSAGSSPDKGAVSSRHDQPPKHSSPPQQLQGQNHQRSPERPSLVPAALWDRLSQEFNSSQLSAIWAAAASALEARQEGSKAVSGTIEAGGTEHVGGV--EAEPIARRTPVIDAAMASRRKSDEGAHRGGGKGGVVLLQGPPGTGKTRTILGVVSAILARGEEKDVAGRGGSFGSGXXXXXXXXXXXSSAGVGNRGMGTTLEVGTKQKRPGLAGRWAAAKTHQRMLVCAPSNGAVDELTNRLALESGGVWDHRGKAFAPRIVRLGKPSEEAPGRVKGVSLEVMVEERVKLHAKSTEARNAEMKVREAYAHIEEAGRALRSGGADAGEIPGVAGIGTYIPCVRVYVRLDTRRRHQLTIHIRRLRGEVLVAKQRRRDALRGLEVERGRIRRSLVSNAQARDLCATLSACGSAPLVEAVSLTGKGFDTVIVDEACQATEPSTLIPLSLGCIRLILVGDPRQLPATVISQRAARLNLEISLFERLESAGHPVHMLTVQYRMHPEIRAFPSERFYDGRLTDAPCVRGEVNQPAAGVPLSSTEPTAVVVATSKPHRPPRPLGPCFPPFLVVDVTSGSERRVGSSYQNPWEASFVAAFLSRLVVSGLRDGRGIKSAGDSGGGTAAGSGTG--SAGVIRVGVITPYRGQVQCIRQELGSSR------RLKGGAEDGGVEVEVSTVDGFQGKEVDVVLFSCVRAPSSLNTGYGGRGGGRGGIGFLADRRRMNVAITRAKRSLVVLGNTRRLSSDTTWKALVDHAKSRERLVSDMADFRGGRXXXXGRESGEALCARLEAKYDASKSGLKGISPSCTRNPDRGLDAESSPNENGVHDGSAGTCPLGGDGDAEEKKHGKARSGQRSSTQQPGSDTETLGRKAADNAPAVEERRTHSLGKSLDRRLHGNGVPHGRQEKPPRSAGATRPPPPVEREGRDGQDRKRTNLNRRHDAGGDSSTSRRRKTTSLSAGETRSPPVQGAGGAERDHRLA---QQAEAVAAGVMGT---GAISSPVGNKRRESRADIPRKRARVAGPEPKRGDISEREKSCLDTGTAKRQSSCKSTAGGFLAGLLNSVAENASGIASGKEYEIRQGLRGGEDDERKRAAAGPRLGGARVTELSHPPTETFGPSLQGRHSPR 9715
KS + PD G+ SS D PK + PP++ Q + Q +P+RPSLVPAALWDRLSQEFN SQL AIWAAAASA EA+++ + A ++ G EA +A R ++ A LLQGPPGTGKTRT+LGVVSAILAR EEKD X G RGMGTTL G +QKRPG+AGRW AAKTHQR+LVCAPSNGAVDEL RLALESGGVWD RG A APR+VRLGKPSE+A RVK VSLE MVEERVKLHAKS EAR AE K+RE +A I+EAGRA+RSGG GE+ GVAGIG+ RRHQL HIRRLRGE+LVAKQRRRDALR LEVERG+IRRSLV +CATLS CGS P+VEAVSL+GKGFDTVIVDEACQATEPSTLIPLSLGC RLILVGDPRQLPATVISQRAARLNLE+SLFERLE AG+PVHMLTVQYRMHPEIRAFPS RFY+GRLTDAPCVR + PA S+E TA+ PLGPCFPPFL+VDV+SGSERR GSSYQNP EASFV+AFL+RLV SGLR GRG+K+ G G +GV+RVGVITPYRGQV CI+QEL RLKGG EDGGV+ EVSTVDGFQGKEVDVVLFSCVRAPSS IGFLAD+RRMNVA+TRA+RSLVVLGN RLSSD TWKALVDH+KSR+RL + R XXX GEALCARLE K G DR D +S+ GG G+A++ G +G GSD + + A PA H G G VP R +A A PP V G DR+ N RH+ S +RRK +S R P G G+ RD QQ A G T A P G A+ P+KRAR G G AKR S+ GGFL GLL+S++ NA GIASGKE++ RQGLRGGED+ER+R AA PRLGGARVTELS P P RHS R
Sbjct: 37 KSPATIPDAGSSSS--DVSPKDTCPPEKQQ-KKRQETPKRPSLVPAALWDRLSQEFNVSQLRAIWAAAASAREAQED--------LAAAARDNDGRATPEAAVLAERRAPVNHAXXXXXXXXXXXXXXXXXXXXXLLQGPPGTGKTRTVLGVVSAILARREEKDCGSX-----------------XXXXXXGARGMGTTLAPGARQKRPGVAGRWVAAKTHQRILVCAPSNGAVDELAQRLALESGGVWDQRGNAVAPRVVRLGKPSEDAADRVKAVSLEFMVEERVKLHAKSAEARTAETKIRETHARIDEAGRAVRSGGV--GEVGGVAGIGS-----------AENRRHQLNTHIRRLRGELLVAKQRRRDALRSLEVERGKIRRSLV-------VCATLSGCGSGPMVEAVSLSGKGFDTVIVDEACQATEPSTLIPLSLGCKRLILVGDPRQLPATVISQRAARLNLEVSLFERLERAGYPVHMLTVQYRMHPEIRAFPSARFYNGRLTDAPCVRDQAAIPAQS---PSSETTALP-----------PLGPCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASGLRSGRGVKAGGXXXXXXXXXXGQDREKSGVVRVGVITPYRGQVHCIQQELSGXXXXXXXXRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSSGXXXXXX-------IGFLADQRRMNVALTRARRSLVVLGNVGRLSSDGTWKALVDHSKSRDRLEPEAVKARTSGGXXXXXXDGEALCARLEETAAGKKGGR-----------DRSGDRQST---------GRNRAGRGGRGEADDAV-GSGVAG--------GSDKKEI---QAPRRPAGSRTGGHGRGDGSG----GINVPDDR------AAAAVVVPPAVADIGEHCADRR---ANPRHEPESVGS-GQRRKPSSRGGDGVR--PSAGLEGSVRDRPPVDKRQQRHEEAGGAKPTPRGSACRRPDGGA-----ANRPQKRARADGQ-----------------GAAKRVSTPD---GGFLGGLLSSLSSNAGGIASGKEHDFRQGLRGGEDEERRRVAAAPRLGGARVTELSRPVEPKQAPPA--RHSSR 1021
BLAST of mRNA_P-littoralis_Contig122.41.397 vs. uniprot
Match: A0A6H5J5S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5S7_9PHAE) HSP 1 Score: 757 bits (1954), Expect = 1.030e-234 Identity = 587/1244 (47.19%), Postives = 687/1244 (55.23%), Query Frame = 2
Query: 1643 IWDYSSRQPSEVLEAFERQIRHEGDDSVLFGVVGAGGRTLRPPNEAIHKKVLEMLPLLVSSVARECSSSQRVGGGMS-GDVPYGSGESLGEGREESGMMVGGRDDGPIAADSFSLADEALGFLSRDVALLSAL--DANHGANRRRKMALARTLLDVLEICYNGTSSGGGGASGHSNDAENHDGDPLSPESWPWNSAATGRADHAV-SSSWWHPSWPVRSVPLWGPRLADIAGDRSSRSSGGTSESGSTSGGGALVVDRAARVVELVLRQHSRAAWRKTLATLRPRTLDSGS------AAQKSGGVTRKEAEDKGEVLPLCGPLLERICLELPLMDLPVRVHAAVFEAHGWLSLLPCVGDSAIRAAENRCGPQASRSLAQLHSGMISQFLKLFVPYVEGLTKTVKSRGASVSPALLPQVVPHIFQALLAAVPAARAALEELLLCSVVSDRRFGDAREVFKKGDLRPVLARLPLDCARACFLAVPQALGAMAAAGPHLTLKSWSPLFQAVGVLGCAVLLPPTSGFSDPRRRGGEGDDEEY------DNELWGALEGVWEFIFLQVLPEALPALREQHATRLEDAIRALFGSLESLWPLLTGPVPRSRRPQLADDFYRSRSLWLQPLLAWVSEAWLPLPAREAAAGFVQRALLPLLHSSSRAPPAGAASGKGADQSVFDHQGVSAAASPKSKTRQLRLMGAKLCAVEEEQGRGEGGNGDEFGS-EAEEAKILQALESAASAATTT-VAVDPSPVQAAPEGSPEVPWVGLGPSEPTNPFVRTAVPLPGAVRSRERGGSSVASEGWSSTPWQQRLGVASSS-PHLTSAGGASSRPSSSQSVRSPPAA---PASRFRNEIVRS------------------SAAGEA-----RRDRQRSAVELSPEELPNHQQIDRSSAVGGAQGSRNQTASSARRREEKLSSISVQMGSWAGSNSATVVAAVKANSTVGSSGADDGKEYANTAEAAAY-VSRAEEVVA------------ARPRGSVVERWREMQRKQMEETQE---PASVGSQKGPHQVDQRAQARLSTDAAKAIAPARPETVASHSAAXXXXXXXXXXXXXXXXXXXXGGAKAREPVERPVDYTSLAEASSMELHRLVLSTWTIPELLAAPMKSAR-----QGASEGQD--RRWLSSLWLPKVPTRFQSAEQYVDIFRGLLLEEIFATLGAALKGGGEXXXXXXXXRPSEAATLSVESFVETGKEGFSHITMVASDG 5170
+W+YSSRQPSEVLEA ERQ + GD + G G R PPNEAI KKV EMLPLLVSS S+ R GG G YG+ E GE + G DD AA +AD AL FLSR++A LSA+ +A GA+ RRK+ALA+ +L VLE CY+G S GGGAS +++D D L PESWPWN+AA S +W+HPSWPVRS+P +GST+ VVDRAARVV+LVLR+H+ AAWR L+ LRP L S S A+Q SG + ED V+PLCGPLLERICLELPLMDLPVRVHAAVFE HGWLSLLPC GDSAIRAAE R GP ASR LA LHSG +SQF+KLFVPYV+GLT+ VK+RG V P I QALLA +PAARAALEEL+ SV SD ++GDLR +L R P DCARACF AVPQALGAMAAAGPH +LKSWSPLFQAVGVLGCAVLLP S + ELW LE VWEFIFLQV LWPLLTGPV + RRP+LAD FYRSRSLWLQPLL+WVS AWLP AREAAA FVQR+LLP LH+SS +A+ G D+ S SP+ + +RL+G KLCAVE G+GG+ S + EEA +L L+SAA+AATT AVDP AAP G+ P P NPF +A R GGSS AS GWS TPW+ RLG +S+ P L SAG S + +Q S PAA P R I+ S S AG+ R R RS +S GG+ G R EK +S +V +W + + + SSGA K Y AEAAA VS A+ ARPRGSVVERWREMQR+Q+ ET E A SQ ++ A +T + + A G +DY SLAEAS+ ELH+LVLS+WT+PEL AA KSAR QG G + R SSLWL KVPTRFQS EQY+++FRGLLL+EIFATL AAL GGG XXXXXXXX P EA TL V S VE GK GF H+T+VA DG
Sbjct: 1 MWEYSSRQPSEVLEALERQTSY-GDGADTADFRGTGRRM--PPNEAIQKKVFEMLPLLVSSA----SAVDRPSGGTGVGTAVYGNQEVGGE-ADHPGAAARRVDDAAAAASVLPVADAALSFLSREIASLSAVAPEARRGAHGRRKLALAKAVLGVLENCYDG--SAGGGASD-----DDYDSDVLGPESWPWNAAAXXXXXXXXXSGAWYHPSWPVRSLPXXXXXXXXXXXXXXXXXXXXXXXNGSTA---VAVVDRAARVVQLVLREHAGAAWRVALSALRP--LPSASSXXXXXASQSSGRM-----EDDECVVPLCGPLLERICLELPLMDLPVRVHAAVFEVHGWLSLLPC-GDSAIRAAEGRGGPAASRVLAALHSGTMSQFVKLFVPYVQGLTEIVKNRG----------VAPSILQALLATIPAARAALEELVSRSVFSDGG--------RRGDLRLLLGRFPPDCARACFQAVPQALGAMAAAGPHFSLKSWSPLFQAVGVLGCAVLLPEASAGDXXXXXXXXXXXXXXXXXXWEECELWEVLEAVWEFIFLQV---------------------------GYLWPLLTGPVAQRRRPRLADGFYRSRSLWLQPLLSWVSAAWLPRVAREAAAIFVQRSLLPFLHASS----CSSAANGGDDRGACGDDDPSVGVSPR---KTIRLVGDKLCAVE-----GDGGSAWALSSGDPEEADLLAVLKSAAAAATTEGTAVDPCSPPAAPRGAARSRVDPHSPEAPRNPFALSAA-------RRGNGGSSAAS-GWSRTPWEDRLGARNSATPSLESAGRPLSGSALAQVTYSSPAAAPEPTVRTPGVILGSHYPRAGGNDFSQAREGGGSTAGDGXXXGFRDSRGRSTT---------------ASTEGGSLGV----------RPEKTASRAVS--NWTANEDGELGS---------SSGARSRKTYVTAAEAAAARVSEAKXXXXXXXXXXXXXXXXARPRGSVVERWREMQRRQVGETTEVVASAPAASQSRSLXXXXXXXXXXXXXXXRSPRNAAVQTTSKEARAAFATAAQAAARRGDSPDGGNGSLAITAARAATLDYASLAEASATELHKLVLSSWTVPELFAASTKSARSGGRFQGPKRGHEVGRSSSSSLWLSKVPTRFQSVEQYLEVFRGLLLDEIFATLVAALDGGGSXXXXXXXXGPPEAMTLRVASLVEGGKGGFGHVTLVADDG 1117
BLAST of mRNA_P-littoralis_Contig122.41.397 vs. uniprot
Match: A0A6H5J6B2_9PHAE (AAA_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6B2_9PHAE) HSP 1 Score: 464 bits (1194), Expect = 4.170e-141 Identity = 332/641 (51.79%), Postives = 375/641 (58.50%), Query Frame = 2
Query: 5690 QATSNPRLLPVPPAALRPRNNNTNSPNP-RTTLGPPYPVDEASFTDTCKRLSSVEGS-LLGVSGGGDRTAGNRRPSGRGEDERPEGRHPDSGGISGVDKTVPTDLLMRSLGCLASFRLTSELLTSHGRGTATRLKRISKSQVWSPEARDAAARLLHTWRGVVDVSSTAQP-PEVDAKLSRAQERGDDEGGRKV------NAKGKRGVAHVKDRAVAAAAVSGRGDEAKKEEDT--------SRSKRKSAGSSPDKGAVSSRHDQPPKHSSPPQQLQGQNHQRSPERPSLVPAALWDRLSQEFNSSQLSAIWAAAASALEARQEGSKAVSGTIEAGGTEHVGGVEAEPIARRTPVIDAAMASRRKSDEGAHRGGGKGGVVLLQGPPGTGKTRTILGVVSAILARGEEKDVAGRGGSFGSGXXXXXXXXXXXSSAGVGNRGMGTTLEVGTKQKRPGLAGRWAAAKTHQRMLVCAPSNGAVDELTNRLALESGGVWDHRGKAFAPRIVRLGKPSEEAPGRVKGVSLEVMVEERVKLHAKSTEARNAEMKVREAYAHIEEAGRALRSGGADAGEIPGVAGIGTYIPCVRVYVRLDTRRRHQLTIHIRRLRGEVLVAKQRRRDALRGLEVERGRIRRSLVSNAQAR 7561
QATS P L P+P A R N+T S N T L PPY VDEASFTD CKRLSSVE S LLG SG G G P + D P + LMRSLGCLASFR+ ELLTSHGRGTA RLKR+SKS+VW P+ R+AAARLL WRGVVDV A + K S+ +ERG G AK K G + DR AA+ R K++ S S KS PD G+ SS D PK + PP++ Q + Q++P+RPSLVPAALWDRLSQEFN SQL AIWAAAASA EA ++ + A G E V AE RR PV AA LLQGPPGTGKTRT+LGVVSAILAR EEKD A GG +G RGMGTTL +QKRPG+AGRW AAKTHQR+LVCAPSNGAVDEL RLALESGGVWD RG A APR+VRLGKPSE+A RVK VSLE MVEERVKLHAKS EARNAE K+RE +A I+EAGRA+RSG D GE+ G+AGIG+ RDALR L+VERG+IRRSLVSNAQAR
Sbjct: 4 QATSEPSLQPLPETAQRAPGNSTTSNNLWATKLAPPYLVDEASFTDACKRLSSVEDSALLGKSGAG-------------------GGSPATAAGLAADIAGPEESLMRSLGCLASFRVAPELLTSHGRGTAKRLKRLSKSEVWGPDVRNAAARLLRAWRGVVDVGGGATAYSKAATKRSQDEERGGAGSGXXXXXXXXGGAKAKVGAEQIVDRVRPAASTKPRLVGEKEQXXXXXXXXXGISSSGHKSPAPMPDAGSSSS--DFSPKVTCPPEKQQKEQ-QQTPKRPSLVPAALWDRLSQEFNVSQLRAIWAAAASAREAHEDLAAAARGNDGPATPETA--VLAE---RRAPVNHAAXXXXXXXXXXXXXXXXXXXXXLLQGPPGTGKTRTVLGVVSAILARREEKDCASGGGR-----------------SGASARGMGTTLAPEARQKRPGVAGRWVAAKTHQRVLVCAPSNGAVDELAQRLALESGGVWDQRGNATAPRVVRLGKPSEDAADRVKAVSLEFMVEERVKLHAKSAEARNAETKIRETHARIDEAGRAVRSG--DVGEVGGMAGIGS----------------------------------AENRDALRSLDVERGKIRRSLVSNAQAR 564
BLAST of mRNA_P-littoralis_Contig122.41.397 vs. uniprot
Match: A0A6H5J8A4_9PHAE (AAA_12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8A4_9PHAE) HSP 1 Score: 370 bits (950), Expect = 1.560e-106 Identity = 332/837 (39.67%), Postives = 407/837 (48.63%), Query Frame = 2
Query: 7868 IRAFPSERFYDGRLTDAPCVRGEVNQPAAGVPLSSTEPTAVVVATSKPHRPPRPLGPCFPPFLVVDVTSGSERRVGSSYQNPWEASFVAAFLSRLVVSGLRDGRGIKSAGDSGGGTAAGSGTGS---AGVIRVGVITPYRGQVQCIRQEL---GSSRRLKGGAEDGGVEVEVSTVDGFQGKEVDVVLFSCVRAPSSLNTGYGGRGGGRGGIGFLADRRRMNVAITRAKRSLVVLGNTRRLSSDTTWKALVDHAKSRERLVSDMADFRGGRXXXXGRESGEALCARLEAKYDASKSGLKGISPSCTRNPDRGLDAESSPNENGVHDGSAGTCPLGGDGDAEEKKHGKARSGQRSSTQQPGSDTETLGRKAADNAPAVE-ERRTHSLGKSLDRRLHGNGVPHGRQEKPPRSAGATRPPPPVEREGRDGQDRKRTNLNRRHDAGGDSSTSRRRKTTSLSAGETRS-----------PPVQGAGGAERDHRLAQQAEAVAAGVMGTGAISSPVGNKRRESRADIPRKRARVAGPEPKRGDISEREKSCLDTGTAKRQSSCKSTAGGFLAGLLNSVAENASGIASGKEYEIRQGLRGGEDDERKRAAAGPRLGGARVTELSHPPTETFGPSLQGRHSPRPSTDSRNRPKVADLLGKDSRSRRSHRQIAGRSKAETFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSHAGSRGDVRRNVAGADHRRSPEERNKRARPVQPAVAGRGDAGNPSVGTGSRRPGGATRPPAPRNYGAAGIGRVGARADSAKKGGAKAGKKSVAGMGVLDILKDISDTWGDSSAKK 10324
+ A S RFY+GRLTDAPCVR + PA +T P A+ PLGPCFPPFL+VDV+SGSERR GSSYQNP EASFV+AFL+RLV SGLR GRG+K+ G +GV+RVG+ITPYRGQV CI+QEL G RRLKGG EDGGV+ EVSTVDGFQGKEVDVVLFSCVRAPSS IGFLAD+RRMNVA+TRA+ SL++LGN RLSSD TW ALVDH+KSRERL ++ R XXX GEALCARLE K A K G + DR D + G AG GG G+A++ +G + AD + E + + G + G+G G R+A A PP + E KR N + ++GG + +RRK + E R PPV E+ + ++A G+ A P G A+ P+KRARV G E AKR S+ S GFL GLL+S++ NA GIASGKE++ RQGLRGGED A PRLGGARVTELS P PS RHS R + AD G+ + R R G + T + RG + P E+ KRAR V+PA A ++G S R G + PA R GA+G R G ++ AKK G++A + G VLDIL+ ISDTWGDSS KK
Sbjct: 9 VPAGSSARFYNGRLTDAPCVRDQAAIPAPSPSSEATGPLALP-----------PLGPCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASGLRSGRGVKAGGXXXXXXXXXXXXRDREKSGVVRVGIITPYRGQVHCIQQELSGGGGGRRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSSGXXXXXXXXX----IGFLADQRRMNVALTRARCSLIILGNVGRLSSDATWNALVDHSKSRERLEPEVVKARTSGGXXXXXXDGEALCARLE-KAAAGKKGGR----------DRSGDRQ------GTGRNQAG---RGGRGEADD----------------------AVGSRVADGSDGKEIQAPRRAAGSRTGGHVRGDGS-GGINVPDDRAAAAAVPPAVTDIEEHCAD--KRANPQHKPESGG---SGQRRKPSWRGGDEVRPSARLEESMRDRPPV------EKHQQRHEEAGGAKPTPRGS-ACKRPDGGA-----ANRPQKRARVYGQE-----------------AAKRVSTPDS---GFLGGLLSSLSSNAGGIASGKEHDFRQGLRGGEDXXXXXXXAAPRLGGARVTELSRPVEREQAPSA--RHSSRAAA-------AADATGRQTPVERDDRGGRGSHRGVDSTEVVPPSTRTDARNGGRVVGTSSASTVDARRVAPSTARRDASSARDYRVGRNQFGRGANQH----LQPPPQPSEQRKRARRVEPAAATGAESGGASS-----RAGVGKQLPASRRPGASGS-RSGGKSVGAKKTGSEASRGG-GGTSVLDILQGISDTWGDSSKKK 730
BLAST of mRNA_P-littoralis_Contig122.41.397 vs. uniprot
Match: W7TPV4_9STRA (Helicase sen1 n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPV4_9STRA) HSP 1 Score: 298 bits (762), Expect = 1.160e-76 Identity = 235/648 (36.27%), Postives = 326/648 (50.31%), Query Frame = 2
Query: 6695 PVIDAAMASRRKSDEGAHRGGGKGGVVLLQGPPGTGKTRTILGVVSAILARGEEKDVAGRGGSFGSGXXXXXXXXXXXSSAGVGNRGMGTTLEVGTKQKRPGLAGRWAAAKTHQRMLVCAPSNGAVDELTNRLALESGGVWDHRGKAFAPRIVRLGKPSEEAPGRVKGVSLEVMVEERVKLHAKSTEARNAEMKVREAYAHIEEAGRALRSGGADAGEIP---GVAGIGTYIPCVRVYVRLDTRRRHQLTIHIRRLRGEVLVAKQRRRDALRGLEVERGRIRRSLVSNAQARDLCATLSACGSAPLVEAVSLTGKGFDTVIVDEACQATEPSTLIPLSLGCIRLILVGDPRQLPATVISQRAARLNLEISLFERLESAGHPVHMLTVQYRMHPEIRAFPSERFYDGRLTDAPCVRGEVNQPAAGVPLSSTEPTAVVVATSKPHRPPRPLGPCFPPFLVVDVTSGSERRVGSSYQNPWEASFVAAFLSRLVVSGLRDGRGIKSAGDSGGGTAAGSGTGSAGVIRVGVITPYRGQVQCIRQELGSSRRLKGGAEDGGVEVEVSTVDGFQGKEVDVVLFSCVRAPSSLNTGYGGRGGGRGGIGFLADRRRMNVAITRAKRSLVVLGNTRRLSSDTTWKALVDHAKSRERLV 8629
P + A AS + + H+G V LLQGPPGTGKTR I+G++SAI+ S+ V RP L + + R+LVCAPSNGA+DE+T RL + G+ + G+ F P +VRLG +A VK VSLE +E + + + E A+ +V ++ R R DA + G+ G ++R +R+ R R E+ AK+RR + L+ LE E+ RIR +L+ +A+ + +TLS S+ L EAV+ T +GF TV++DEA QA EPSTLIPL GC LILVGDPRQLPATV+S + + SLFERLE GHPVH+L VQYRM P I FPS+ FY +L++AP + E + A L + P F + V +V+S E + G++ N EA F ++RL V D K + VITPYR QV+ + + L R++ G E+G EVST+DGFQG+E +V++FSCVRA T IGFLAD RRMNV +TRA+RSL VL + L +D +W+A ++ A+ R+ LV
Sbjct: 1951 PQLKAISASCFINAQAVHQGCE---VTLLQGPPGTGKTRCIMGLLSAIMHS-----------------RPTSTYYPSHSATNV----------------RPALRVGYRHHQREARILVCAPSNGAIDEITMRL--QRTGLLNAEGQVFKPTLVRLGVVDPDAEEEVKTVSLESQLERALLTNFQKKEYDKADAEV----LRLQRDERDAREIALDARKCRLDHGLHGRNEGEVEESEWLRKAEQRQ-------RISRSELYRAKRRRWECLKALEAEKSRIRNNLIRDAKI--ILSTLSTAASSQLAEAVTSTSRGFGTVVIDEAGQAVEPSTLIPLRYGCRNLILVGDPRQLPATVMSPVLQKYKYDRSLFERLEKGGHPVHLLRVQYRMRPPICRFPSQAFYHNKLSNAPAL--EAAEEDADGDLKRYDRV-----------------PYFGAYRVFNVSSAREIKRGNAISNIEEAIFAVQLIARLRVE-FPDLVAFK---------------------HMAVITPYRAQVRLVEEHL----RVRFG-EEGSSLAEVSTIDGFQGREKEVIIFSCVRANPQGGT-----------IGFLADERRMNVGLTRARRSLFVLCHRASLWTDRSWRAFIEDAEERQSLV 2490
BLAST of mRNA_P-littoralis_Contig122.41.397 vs. uniprot
Match: B6K5E8_SCHJY (Helicase sen1 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K5E8_SCHJY) HSP 1 Score: 261 bits (666), Expect = 1.240e-65 Identity = 212/663 (31.98%), Postives = 320/663 (48.27%), Query Frame = 2
Query: 6680 IARRTPVIDAAMASRRKSDEGA---HRGGGKGGVVLLQGPPGTGKTRTILGVVSAILARGEEKDVAGRGGSFGSGXXXXXXXXXXXSSAGVGNRGMGTTLEVGTKQKRPGLAGRWAAAKTHQRMLVCAPSNGAVDELTNRLALESGGVWDHRGKAFAPRIVRLGKPSEEAPGRVKGVSLEVMVEERVK-LHAKSTEARNAEMKVREAYAHIEEAGRALRSGGADAGEIPGVAGIGTYIPCVRVYVRLDTRRRHQLTIHIRRLRGEVLVAKQRRRDALRGLEVERGRIRRSLVSNAQARDLCATLSACGSAPLVEAVSLTGKGFDTVIVDEACQATEPSTLIPLSLGCIRLILVGDPRQLPATVISQRAARLNLEISLFERLESAG-HPVHMLTVQYRMHPEIRAFPSERFYDGRLTDAPCVRGEVNQPAAGVPLSSTEPTAVVVATSKPHRPPRPLGPCFPPFLVVDVTSGSERRVGSSYQNPWEASFVAAFLSRLVVSGLRDGRGIKSAGDSGGGTAAGSGTGSAGVIRVGVITPYRGQVQCIRQELGSSRRLKGGAEDGGV---EVEVSTVDGFQGKEVDVVLFSCVRAPSSLNTGYGGRGGGRGGIGFLADRRRMNVAITRAKRSLVVLGNTRRLSSDTTWKALVDHAKSRERLVSDMAD 8644
++ + P + M S ++ A H + G L+QGPPGTGKT+TILG+VSA+L G G+G F + G + GTK ++L+CAPSN A+DE+ RL G++DH G F P+I+R+G SE VK +L+ ++E+++ L+ K + M+VR+ + I + ALR+ ++ G P V + +R + ++QL + +R + +A R +++ + +I+ L+ +A+ +C+TLSA G L+++ G F +VI+DEA QA E S LIPL GC R I+VGDP QLP TV+S+ A++ SL+ R+ + +L++QYRMHPEI FPS FY RL D P ++ T++P P F + DV + + S NP EASFV +LV + + G +VG++TPYR Q+Q +R + RR G + V+ +TVDGFQG+E D++LFSCVR GGIGFL+D RR+NVA+TRAK SL ++GN L+ D W AL+ A++R LV+ D
Sbjct: 1257 LSLQPPQLKRVMESYHVNEPQALAIHAACARTGFTLVQGPPGTGKTKTILGIVSALLTSG------GQGRRFDA-------------------PGQNGNTQPGTK-----------------KVLICAPSNAAIDEILLRL---KDGIFDHEGIKFKPKILRVGY-SESINPHVKEFTLDEKMQEQMQVLNLKKNQDNGESMQVRKRHDEILKERDALRA------QLEKARNSGINDPAVEMKLREVMKTKNQLEQRLDDMRRQQGIAN-------RNMDIAKKQIQSQLLKDAEI--ICSTLSASGHDILLKS----GISFPSVIIDEAAQAVELSALIPLKYGCERCIMVGDPNQLPPTVLSKTASQNGYSESLYVRMHKQNPNSSFLLSIQYRMHPEISRFPSSYFYGSRLLDGPDMQK---------------------LTARPWH----HDPTFGIYRFFDVRTRESSSITKSVYNPEEASFVLTLYDKLVQDYIN----VDMEG------------------KVGIVTPYRRQLQELRMQF--ERRY------GPLIFKRVDFNTVDGFQGQEKDIILFSCVRGDMG------------GGIGFLSDTRRLNVALTRAKSSLYIIGNVGTLTKDKMWSALITDAQTRSCLVTSSID 1787
BLAST of mRNA_P-littoralis_Contig122.41.397 vs. uniprot
Match: A0A2G5BIP1_COERN (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BIP1_COERN) HSP 1 Score: 243 bits (619), Expect = 1.870e-65 Identity = 209/638 (32.76%), Postives = 298/638 (46.71%), Query Frame = 2
Query: 6767 GVVLLQGPPGTGKTRTILGVVSAILARGEEKDVAGRGGSFGSGXXXXXXXXXXXSSAGVGNRGMGTTLEVGTKQKRPGLAGRWAAAKTHQRMLVCAPSNGAVDELTNRLALESGGVWDHRGKAFAPRIVRLGKPSEEAPGRVKGVSLEVMVEERVKLHAKSTEARNAEMKVREAYAHIEEAGRALRSGGADAGEIPGVAGIGTYIPCVRVYVR-LDTRRRH---QLTIHIRRLRGEVLVAKQRRRDALRGLEVERGRIRRSLVSNA-----------QARD-LCATLSACGSAPLVEAVSLTGKGFDTVIVDEACQATEPSTLIPLSLGCIRLILVGDPRQLPATVISQRAARLNLEISLFERLE-SAGHPVHMLTVQYRMHPEIRAFPSERFYDGRLTDAPCVRGEVNQPAAGVPLSSTEPTAVVVATSKPHRPPRPLGPCFPPFLVVDVTSGSERRVGSSYQNPWEASFVAAFLSRLVVSGLRDGRGIKSAGDSGGGTAAGSGTGSAGVIRVGVITPYRGQ----VQCIRQELGSSRRLKGGAEDGGVEVEVSTVDGFQGKEVDVVLFSCVRAPSSLNTGYGGRGGGRGGIGFLADRRRMNVAITRAKRSLVVLGNTRRLSSDTTWKALVDHAKSR 8617
G L+QGPPGTGKT+TILG+ A+L+ ++KD AA + ++L+CAPSN AVDE+ RL G+ D RG F PR+VR+G+ S+ V+ +L+ ++E+ L+A +T+A A+ + A R LR+ + + V +R LD++ + T +R +R + KQR++ + LE ER R R + + Q+ D LC TLS G L FDTVI+DEA Q+ E S LIPL C R +LVGDP QLP TV SQ A + SLF R++ +A V +L++QYRMHPEI A PS FY+ RL D P + + P HR R +PPF+ +++ SG E++ + + + V A + +LV +D + R+GVITPY+ Q V+ R+ G S A D +E +TVDGFQG+E D+++FSCVRA G G+GFLADRRRMNV +TRA++SL VLGN + L WK+L+D A +R
Sbjct: 6 GFTLIQGPPGTGKTKTILGLTGALLS--QDKD---------------------------------------------------AARTANNKLLICAPSNAAVDEIVKRL---KSGIRDSRGVTFKPRVVRVGQ-SDHISSTVRDTTLDFLMEQA--LNANTTQALGAKETRKSALGQQ----RTLRA----------------QLDEINVEIRELDSQMQRTDPSSTAALREMREKFHSVKQRKQRVCQQLEQERARAREASKAXXXXXXXXRMQILQSTDILCCTLSGSGHDMLTSLKC----AFDTVIIDEAAQSIELSCLIPLKYECNRCVLVGDPLQLPPTVFSQSATKHGYNKSLFVRVQQNAPESVSLLSIQYRMHPEISALPSRLFYNSRLKDGPEMAAKQCAPW--------------------HRNER-----YPPFVFLNIQSGREQK--GALHSVFNMQEVEAAV-QLVFGLCQDYPKLS------------------WKQRIGVITPYKQQLRKLVEAFRKHFGPS------ATDA---IECNTVDGFQGQEKDIIIFSCVRA-------------GEAGVGFLADRRRMNVGLTRARKSLFVLGNAKMLGGSPLWKSLIDDANTR 492
BLAST of mRNA_P-littoralis_Contig122.41.397 vs. uniprot
Match: A0A061R4Q5_9CHLO (Senataxin n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R4Q5_9CHLO) HSP 1 Score: 245 bits (625), Expect = 5.580e-64 Identity = 216/648 (33.33%), Postives = 301/648 (46.45%), Query Frame = 2
Query: 6776 LLQGPPGTGKTRTILGVVS---------------AILA-----RGEEKDVAGRGGSFGSGXXXXXXXXXXXSSAGVGNRGMGTTLEVGTKQKRPGLAGRWAAAKTHQRMLVCAPSNGAVDELTNRLALESGGVWDHRGKAFAPRIVRLGKPSEEAPGRVKGVSLEVMVEERVKLHAKSTEARNAEMKVREAYAHIEEA---GRALRSGGADAGEIPGVAG--IGTYIPCVRVYVRLDTRRRHQLTIHIRRLRGEVLVAKQRRRDALRGLEVERGRIRRSLVSNAQARDLCATLSACGSAPLVEAVSLTGKGFDTVIVDEACQATEPSTLIPLSLGCIRLILVGDPRQLPATVISQRAARLNLEISLFERLESAGHPVHMLTVQYRMHPEIRAFPSERFYDGRLTDAPCVRGEVNQPAAGVPLSSTEPTAVVVATSKPHRPPRPLGPCFPPFLVVDVTSGSERRVGS-SYQNPWEASFVAAFLSRLVVSGLRDGRGIKSAGDSGGGTAAGSGTGSAGVIRVGVITPYRGQVQCIRQELGSSRRLKGGAEDGGVEVEVSTVDGFQGKEVDVVLFSCVRAPSSLNTGYGGRGGGRGGIGFLADRRRMNVAITRAKRSLVVLGNTRRLSSDTTWKALVDHAKSRERLVSDMA 8641
L+QGPPGTGKT T+ G+++ A LA E + GR S SG SSA V +R + PG+ + R+LVCAPSN A DEL R+ + G G + P +VR+G + R + V ++ +V + + S + ++REA H+ G+ GAD + A + + V+L+ + T H RR R E LE+E LV NA+ + TLS+ G F+TV++DEACQA+E S L PL GC + +LVGDP+QLPATV+S +A +E SLFERL+ A PVHML VQYRMHPEIR FPS+ FY+G+L D C+ + P L P++ DV G E R+G S N EA AA L + L++ + + VGVITPYR Q C+++ S + G A+ G EV + TVD FQG+++DVV+ SCVRA SS R GIGF+ D RR+NVAITRA+ +L VLG+ L TW+AL++ A+ R R++ + +
Sbjct: 112 LIQGPPGTGKTHTVRGILNTWHLVQYQRYYTSLVACLAPKSKIAAEWRQSRGRNSSLNSGVQDIYSGQL--SSAEVDDRLL----------LLPGV-------EPQPRILVCAPSNAATDELLQRIM--NIGFRAGNGSMYWPNVVRVGSEAAPLSQRARDVWVDNIVNQYLSATDISAVISKRDERLREAQRHLGALCHHGQLALQPGADTDRLATEAAQIYDAWYKARQEVVKLNLVISYMQTQH-RRHRNE--------------LELE-------LVKNAEI--IFTTLSSSGRQIFSRLSERKCVKFETVLIDEACQASEVSVLQPLMYGCRKCVLVGDPQQLPATVLSLKAKEHQMERSLFERLQHASCPVHMLMVQYRMHPEIRHFPSDHFYEGKLQDGDCILQRXDPPFYSHSL-------------------------LKPYIFFDVDQGRELRMGGRSLSNQAEADLAAALYVALQKT-LKELEWSEP-------------------VSVGVITPYREQRNCLKKTFKS---VCGEAKAG--EVFIETVDSFQGRQLDVVMLSCVRASSS-----------RSGIGFVGDIRRLNVAITRAQLALWVLGDAATLGLSPTWRALIEDAERRRRIIPNAS 653
BLAST of mRNA_P-littoralis_Contig122.41.397 vs. uniprot
Match: K3WEB8_GLOUD (TFIIS N-terminal domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEB8_GLOUD) HSP 1 Score: 254 bits (648), Expect = 2.020e-63 Identity = 233/725 (32.14%), Postives = 312/725 (43.03%), Query Frame = 2
Query: 6767 GVVLLQGPPGTGKTRTILGVVSAILA---------------------------RGEEKDVAGRGGSFGSGXXXXXXXXXXXSSA-------------GVGNRGMGTTLE-------VGTKQK------------RPGLAGRWAAAK----------THQRM----------------LVCAPSNGAVDELTNRLALESGGVWDHRGKAFAPR---------------IVRLGKPSEEAPGRVKGVSLEVMVEERVKLHAKSTEARNAEMKVREAYAHIEEAGRALRSGGADAGEIPGVAGIGTYIPCVRVYVRLDTRRRHQLTIHIRRLRGEVLVAKQRRRDALRGLEVERGRIRRSLVSNAQARDLCATLSACGSAPLVEAVSLTGKGFDTVIVDEACQATEPSTLIPLSLGCIRLILVGDPRQLPATVISQRAARLNLEISLFERLESAGHPVHMLTVQYRMHPEIRAFPSERFYDGRLTDAPCVRGEVNQPAAGVPLSSTEPTAVVVATSKPHRPPRPLGPCFPPFLVVDVTSGSERRVGSSYQNPWEASFVAAFLSRLVVSGLRDGRGIKSAGDSGGGTAAGSGTGSAGVIR----VGVITPYRGQVQCIRQELGSSRRLKGGAEDGGVEVEVSTVDGFQGKEVDVVLFSCVRAPSSLNTGYGGRGGGRGGIGFLADRRRMNVAITRAKRSLVVLGNTRRLSSDTTWKALVDHAKSRERLV 8629
G+ LLQGPPGTGKT+TI+G++S LA +GE + R S SG S+A GMG+ L G +K R L + +A K QR+ L+CAPSNGAVDEL R+ + G+ D GK R IVRLG P E+AP VK V L +++ + +H K+ + R+ ++E + LR D + P A G P R + + + + +RRLR EV R + G + R I + TLS GS PL S +GFD +IVDEA QA E STL+P+ R++LVGDP+QLPATV S AA + SLFER+ +G ML VQYRMHP +R FPS+RFY G LTD P V + + GV PCF PFL+ DVT+ SE + S N EA F + + A V + VG ++PY+ QV+ +R+E+ S + + +EV+TVDGFQG+E DV++FSCVRA RGGIGFL D RR+NVAITRA+ L V+G+ L D TW ALV A R+ ++
Sbjct: 1473 GISLLQGPPGTGKTKTIMGLLSGFLALRPPASAIIPSKNFKSSSSAASATAVPKGESSSMPPRAESTKSGFSNFQFGREIGSTAQPSPSSARPTFSLSAVTSGMGSILRRTDADPNTGPAKKTTIQALKNATTVRSRLEDKLSARKPSPSAPSSLVVRQRVISSNPTMRSVGKSCNVLLCAPSNGAVDELVLRIVTD--GLMDSTGKVTKVRAPSVHLEALSEDWLSIVRLGNPGEDAPDIVKSVCLPQIIKRELDIHPKALQLRS-----------LQETQQTLRKSIRDFHQKPKDASEG---PKSRKGLAQIHAQLTKCSGEVRRLRDEVFAI----RTKMTGAILSRASI------------IACTLSKSGSGPL----SGLQRGFDALIVDEAAQAVELSTLVPIRERVARVVLVGDPKQLPATVKSVVAANARYDRSLFERIAESGVAPSMLRVQYRMHPFLREFPSKRFYGGMLTDGPSVMERIQKVCPGVYKF----------------------PCFQPFLLYDVTNSSEEDMNGSKYNRIEAQFCIEICQNMFQT-------------------------CADVRKHNWSVGFVSPYKEQVRVLRREITRS------SIPSSISIEVNTVDGFQGREKDVIIFSCVRASR------------RGGIGFLKDIRRLNVAITRARFCLFVVGHVDTLVRDETWSALVRSADDRKLII 2096 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.41.397 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig122.41.397 >prot_P-littoralis_Contig122.41.397 ID=prot_P-littoralis_Contig122.41.397|Name=mRNA_P-littoralis_Contig122.41.397|organism=Pylaiella littoralis U1_48|type=polypeptide|length=3360bp MDVEVISVDDDDGESNEEGEVGELESEDGHDDDDFEIFSQEKVRYQNDDGback to top mRNA from alignment at P-littoralis_Contig122:155295..181193- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig122.41.397 ID=mRNA_P-littoralis_Contig122.41.397|Name=mRNA_P-littoralis_Contig122.41.397|organism=Pylaiella littoralis U1_48|type=mRNA|length=25899bp|location=Sequence derived from alignment at P-littoralis_Contig122:155295..181193- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig122:155295..181193- >mRNA_P-littoralis_Contig122.41.397 ID=mRNA_P-littoralis_Contig122.41.397|Name=mRNA_P-littoralis_Contig122.41.397|organism=Pylaiella littoralis U1_48|type=CDS|length=10080bp|location=Sequence derived from alignment at P-littoralis_Contig122:155295..181193- (Pylaiella littoralis U1_48)back to top |