mRNA_P-littoralis_Contig122.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.4.1
Unique NamemRNA_P-littoralis_Contig122.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig122.4.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 9.210e-14
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:   28 DDEFGTEMAYLLESE---VLPEAPSAWAEELWEVAKHNPAGIRAWTGEKLGTIERGC--VDPLPKWKKSSPNEVSTCGRQQAHLLSQLDMDEVMARQNSSAQSGDNVNY 339
            DDEF  E+A LL  E    + + P + A  L + A  N  G+RA   E+  T  +GC    P P W KS P+ ++TCGRQQAH+++ + +  V+ RQ      GDNV+Y
Sbjct:   58 DDEFDEELATLLADEPPRAVKQTPLSKA--LLQTAVGNSGGVRALLEEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQHVLDRQKERDSQGDNVSY 164
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BLAST of mRNA_P-littoralis_Contig122.4.1 vs. uniprot
Match: A0A6H5K9U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.320e-10
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 1 
Query:   28 DDEFGTEMAYLLESE---VLPEAPSAWAEELWEVAKHNPAGIRAWTGEKLGTIERGC--VDPLPKWKKSSPNEVSTCGRQQAHLLSQLDMDEVMARQNSSAQSGDNVNY 339
            DDEF  E+A LL  E      + P A A     + + NP G+RA   E+  T  +GC    P P W KS P+ ++TCGRQQAH+++ + + E  ++       GDNV+Y
Sbjct:   57 DDEFDEELATLLADEPPRAANQTPLAKA-----LLQANPGGVRALLKEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQERDSQ-------GDNVSY 153
[Close]
BLAST of mRNA_P-littoralis_Contig122.4.1 vs. uniprot
Match: A0A6H5K0E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.090e-10
Identity = 37/93 (39.78%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:   28 DDEFGTEMAYLLESE---VLPEAPSAWAEELWEVAKHNPAGIRAWTGEKLGTIERGCV--DPLPKWKKSSPNEVSTCGRQQAHLLSQLDMDEV 291
            DDEF  E+A LL  E      + P A A  L + A  NP G+RA   E+  T  +GC+   P P W  S P+ ++TCGRQQAH+++ + +  V
Sbjct:   58 DDEFDEELATLLADEPPRAAKQTPLAKA--LLQAAVGNPGGVRALLKEQAVTAAKGCMCETPQPGWANSDPDRITTCGRQQAHIIAGVSIQTV 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE9.210e-1439.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U2_9PHAE1.320e-1037.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0E2_9PHAE2.090e-1039.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:19596..20857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size341
Hectar predicted targeting categoryother localisation
Exons2
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789525.3525615-CDS-P-littoralis_Contig122:19595..198801680789525.3525615-CDS-P-littoralis_Contig122:19595..19880Pylaiella littoralis U1_48CDSP-littoralis_Contig122 19596..19880 +
1680789525.3635087-CDS-P-littoralis_Contig122:20802..208561680789525.3635087-CDS-P-littoralis_Contig122:20802..20856Pylaiella littoralis U1_48CDSP-littoralis_Contig122 20803..20856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.4.1prot_P-littoralis_Contig122.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 19596..20856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.4.1

>prot_P-littoralis_Contig122.4.1 ID=prot_P-littoralis_Contig122.4.1|Name=mRNA_P-littoralis_Contig122.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
GDQTPHQTYDDEFGTEMAYLLESEVLPEAPSAWAEELWEVAKHNPAGIRA
WTGEKLGTIERGCVDPLPKWKKSSPNEVSTCGRQQAHLLSQLDMDEVMAR
QNSSAQSGDNVNY
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mRNA from alignment at P-littoralis_Contig122:19596..20857+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.4.1 ID=mRNA_P-littoralis_Contig122.4.1|Name=mRNA_P-littoralis_Contig122.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1262bp|location=Sequence derived from alignment at P-littoralis_Contig122:19596..20857+ (Pylaiella littoralis U1_48)
GGTGACCAAACTCCTCACCAAACTTACGATGACGAGTTTGGCACCGAGAT
GGCATACCTCTTGGAAAGCGAGGTACTGCCTGAGGCGCCATCTGCCTGGG
CTGAAGAGCTGTGGGAAGTAGCCAAGCACAACCCTGCTGGGATACGCGCC
TGGACAGGAGAGAAGCTCGGTACGATCGAGCGTGGATGCGTGGATCCTCT
CCCGAAATGGAAAAAAAGTAGCCCCAACGAGGTCAGCACATGCGGCAGGC
AGCAGGCCCATCTCCTCTCCCAGCTGGACATGGATGTAAGTGTGTACGTC
TGTGAGTGTCTGTCCACGTGCAGAAAACAACAGTAGGCTCTGGGATGATG
GTAGATAAAGAACATGAGGCGCCCCCTGTCCCGAAGCACTCAGAGAGCAA
GTCGGCGCGGTCGGGAACTGTAGTCCGACATAACACACAACGATGCCACT
CTTCTGTTTTTGGTGTACTGGCGCAAAACCTACAGAAACACGATTATCTC
ATACCGGTATGATGTGCAGCAGTTCCAGGCATACAGCAGAACAAAGTAAA
TACTGCTGTACTTCAGTAAAATTGAAATCATACACAGCAGTAGACAGCAG
TGCTTTTTACAGCAGTACTGGTCAAGCCTTCGAGCATGCTTGGTACAAAG
CAGTACTTCGAAGTACCTTTTTACAGCAGTAATACCGGTCAAGCCTTGAA
CATGCTTGGTACAAATCATGCTACTTTGTTGTTTTTTTAACTTACAAACA
CAGCAGTGATGTCTTGGTAAGAAAAAAATAAAAAATAAAAAATGAAAACA
TCAATGTGTTCGCCTCTCTCAAGACTACTTTTCTGATATTATCAGACAAA
TTGCATGCATACAAGTGTGCGTGTGTTGTCATCCCATTAATTGGACACCA
CTCTACTCTTCCGGGTAGGTAGACGCTCCAAGGGGTCACAAAGTAGGAAG
TCAACATAGGAGTGTTTTCTTTTATTTATTTTTCTTTTCTTTCTCCACTT
CCCACTGCGGTACTTGCCTTCATTTTTTCTCGCGATAAAGGGTACAGCCA
TCCTTTTCCCTCGTCGACACTTCGGATCTTGTTCACTCACGAATTGATCA
TTTTTCACCCTCACGAATGTCATGAGAAGAATTCCGGATCGTGTTACTTT
ATTAATAGTCCCACACGCCCTCATCCCGCCCTCCCGCCCCCCTTGCACGT
GCTACAGGAAGTGATGGCTAGGCAAAACAGCAGTGCACAGTCTGGCGACA
ACGTCAACTACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig122:19596..20857+

>mRNA_P-littoralis_Contig122.4.1 ID=mRNA_P-littoralis_Contig122.4.1|Name=mRNA_P-littoralis_Contig122.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig122:19596..20857+ (Pylaiella littoralis U1_48)
GGTGACCAAACTCCTCACCAAACTTACGATGACGAGTTTGGCACCGAGAT
GGCATACCTCTTGGAAAGCGAGGTACTGCCTGAGGCGCCATCTGCCTGGG
CTGAAGAGCTGTGGGAAGTAGCCAAGCACAACCCTGCTGGGATACGCGCC
TGGACAGGAGAGAAGCTCGGTACGATCGAGCGTGGATGCGTGGATCCTCT
CCCGAAATGGAAAAAAAGTAGCCCCAACGAGGTCAGCACATGCGGCAGGC
AGCAGGCCCATCTCCTCTCCCAGCTGGACATGGATGAAGTGATGGCTAGG
CAAAACAGCAGTGCACAGTCTGGCGACAACGTCAACTAC
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