mRNA_P-littoralis_Contig122.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.38.1
Unique NamemRNA_P-littoralis_Contig122.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig122.38.1 vs. uniprot
Match: A0A6H5KF00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF00_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 1.140e-72
Identity = 126/141 (89.36%), Postives = 130/141 (92.20%), Query Frame = 1 
Query: 1183 VQLCGAVRLKIDGHDWAAGPLRLVMSGEGLFASAAKYGKGLLNPPTEERARLPRQKNGRVANDGPAWLVPAGLVLAGDGALQAVTWETYVWRRGDPHLSSRELHEAILPLGILRGLVFSQGSTSLKQKLGGTFTDEQRRRG 1605
            VQLCGAVR KI+GHDW AGPLRLVMSGEGL  SAAKY KGLLNPPTEERARLPRQ+NGRVANDG AWLVPAGLVLAGDG LQ VTWETY+WR GDPHLSSRELHEAILPLG LRGLVFS+GSTSL QKLGGTFTDEQRRRG
Sbjct:   43 VQLCGAVRAKINGHDWTAGPLRLVMSGEGLLDSAAKYDKGLLNPPTEERARLPRQENGRVANDGRAWLVPAGLVLAGDGTLQIVTWETYIWRTGDPHLSSRELHEAILPLGFLRGLVFSRGSTSLNQKLGGTFTDEQRRRG 183
[Close]
BLAST of mRNA_P-littoralis_Contig122.38.1 vs. uniprot
Match: A0A6H5KLA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA4_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 2.350e-52
Identity = 107/183 (58.47%), Postives = 136/183 (74.32%), Query Frame = 2 
Query:  578 TGDIEAATRNSLLSLDGNGXXXXXSSPDVVDLADEGQGGGADGARRPVVASGAGRNEAGSEPLLEPHQEVLFNAVEASMADSSFSCGQRCKFEEIAQGTAEHVDMAEATPEDVLRAACREYTIGRVLALDIIQQRELNRTELRNGGMERLDITRSFKGRCNYANVYQWSDKAATLRMVDAWGS 1126
            +GDIEAAT+NSLLSL GN XXXXX     VD+ ++G+GGGADG RRPV+ASGAGR +AGSE  LE  Q  L   V+ +M D SFSC QR KFEEI +G AE + MA ATPEDVL+ AC +YT+GR LALD +++REL+ ++L+  G+ERL++   FK + NYA VY +SD+AA  RMVD W +
Sbjct:    6 SGDIEAATKNSLLSLGGNXXXXXXXXAGTVDVTNKGEGGGADGTRRPVIASGAGRTKAGSESTLETWQLELIERVKVAMDDPSFSCSQRVKFEEICEGAAEPMGMAGATPEDVLKVACSKYTLGRTLALDAMRERELSLSQLQKSGVERLNLGSPFKEKTNYATVYVFSDRAAANRMVDMWAN 188
[Close]
BLAST of mRNA_P-littoralis_Contig122.38.1 vs. uniprot
Match: A0A6H5K9F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9F7_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 5.610e-45
Identity = 92/140 (65.71%), Postives = 103/140 (73.57%), Query Frame = 1 
Query: 1192 CGAVRLKIDGHDWAAGPLRLVMSGEGLFASAAKYGKGLLNPPTEERARLPRQKNGRVANDGPAWLVPAGLVLAGDGALQAVTWETYVWRRGDPHLSSRELHEAILPLGILRGLVFSQGSTSLKQKLGGTFTDEQRRRGGN 1611
            CG+VR K++ H+W  G LRL++SGE L ASA KY KGL  PP   RAR P Q NGRVANDGPAW VPAGLVL G  A+  V  ETYVWR GDP+ SSRELHEAIL L +L GLV+   S  L QK+GGTFTDEQR RGGN
Sbjct:  199 CGSVRAKVNRHEWDNGALRLLISGERLSASALKYTKGLQKPPIAARARRPHQLNGRVANDGPAWNVPAGLVLVGADAIDTVGSETYVWRMGDPYRSSRELHEAILALDVLGGLVWCPESVGLNQKVGGTFTDEQRSRGGN 338
[Close]
BLAST of mRNA_P-littoralis_Contig122.38.1 vs. uniprot
Match: A0A6H5KI34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI34_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.810e-42
Identity = 96/160 (60.00%), Postives = 113/160 (70.62%), Query Frame = 3 
Query: 1815 AVWDGHEAATPVQQAAMDQSSADRSRGGEAS--TLHRRDDKGGDGRFLSSEQGASRRPADTSSQWKAHAVEDIENAVPGSCSNCGEYRELRWFFARDGKRRVEVPDHTV----GKNRCNKNSKRPRGKFMPNDDAVKTITREGLRKAVQTEARNVANKTT 2276
            AV +G+EA TP+QQ AMDQ S D SRGG A   TL+ R+ KGGDGR LSSEQGAS RPADTS+QW  HAVE+   A P +CSNCG+ REL WFF   G+RRV V DH V    G  RCNK++ +PRG F P D+ VKTIT++GL KAV  EA  VA K +
Sbjct:    2 AVVEGNEAPTPLQQRAMDQRSEDSSRGGAAGDKTLYGRE-KGGDGRSLSSEQGASIRPADTSAQWTNHAVEESLKAEPATCSNCGKPRELSWFFYGGGQRRVVVLDHMVVGGSGTVRCNKHANKPRGVFKPTDEKVKTITKDGLLKAVGREATRVAKKAS 160
[Close]
BLAST of mRNA_P-littoralis_Contig122.38.1 vs. uniprot
Match: A0A6H5K367_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K367_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 2.500e-38
Identity = 82/135 (60.74%), Postives = 95/135 (70.37%), Query Frame = 1 
Query: 1189 LCGAVRLKIDGHDWAAGPLRLVMSGEGLFASAAKYGKGLLNPPTEERARLPRQKNGRVANDGPAWLVPAGLVLAGDGALQAVTWETYVWRRGDPHLSSRELHEAILPLGILRGLV-FSQGSTSLKQ--KLGGTFT 1584
            LCG+VR K++ HDW +G LRL++SGEGL ASA KY +GL  PPT  RAR PRQ NGRVANDGPAW VPAGLVL G  A+  V  ETYVWR GDPH SSREL +A+L L  L GL    +G T  +Q   +GG  T
Sbjct:   47 LCGSVRAKVNRHDWGSGALRLLISGEGLSASAHKYARGLQQPPTAVRAREPRQVNGRVANDGPAWNVPAGLVLVGVDAINEVGTETYVWRTGDPHRSSRELQDAVLALVFLGGLWRLGEGRTRREQARSVGGAST 181
[Close]
BLAST of mRNA_P-littoralis_Contig122.38.1 vs. uniprot
Match: A0A6H5KU89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU89_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.820e-33
Identity = 77/132 (58.33%), Postives = 92/132 (69.70%), Query Frame = 3 
Query: 1881 DRSRGGEASTLHRRDDKGGDGRFLSSEQGASRRPADTSSQWKAHAVEDIENAVPGSCSNCGEYRELRWFFARDGKRRVEVPDHTVGKNRCNKNSKRPRGKFMPNDDAVKTITREGLRKAVQTEARNVANKTT 2276
            D SRGG A TL+ R+ KG DGR LSSE GAS RP DTS+QW  HA E+   A   +CSNC E REL  FF   G RRV V DH VGK+RCNK++ +PRG F P+D+ VKTIT +GL KAV+ EA+ VA K +
Sbjct:   35 DSSRGGAAGTLYGRE-KGDDGRSLSSEHGASMRPTDTSAQWVDHAFEEPLQAEASTCSNCEEARELSLFFYGGGTRRVMVLDHMVGKHRCNKHANKPRGVFKPSDEKVKTITDDGLLKAVRREAKGVAKKAS 165
[Close]
BLAST of mRNA_P-littoralis_Contig122.38.1 vs. uniprot
Match: A0A6H5JCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN5_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 5.090e-32
Identity = 77/127 (60.63%), Postives = 92/127 (72.44%), Query Frame = 3 
Query: 1896 GEASTLHRRDDKGGDGRFLSSEQGASRRPADTSSQWKAHAVEDIENAVPGSCSNCGEYRELRWFFARDGKRRVEVPDHTVGKNRCNKNSKRPRGKFMPNDDAVKTITREGLRKAVQTEARNVANKTT 2276
            G A TL+ R+ KGGDGR LSSEQGAS RPADTS+QW  HAVE+   A P +CSNC E REL WFF   G RRV V DH VG +RCNK + +PRG F P D+ VKTIT++G+RKAV+ EA+  A K +
Sbjct:  370 GAAGTLYGRE-KGGDGRSLSSEQGASIRPADTSAQWTEHAVEEPLRAEPATCSNCEEPRELSWFFYGGGTRRVVVLDHKVGLHRCNKYAIKPRGVFKPTDEKVKTITKDGIRKAVRREAKRGAKKAS 495
[Close]
BLAST of mRNA_P-littoralis_Contig122.38.1 vs. uniprot
Match: D7FV88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV88_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 4.150e-28
Identity = 65/88 (73.86%), Postives = 70/88 (79.55%), Query Frame = 1 
Query: 1345 QKNGRVANDGPAWLVPAGLVLAGDGALQAVTWETYVWRRGDPHLSSRELHEAILPLGILRGLVFSQGSTSLKQKLGGTFTDEQRRRGG 1608
            Q NGRVANDGPAW +PAGLVLAG  A+  VT ETYVWR GDPH SSRELHEAIL L  L GLV+S+ S  L QK+GGTFTDEQR RGG
Sbjct:  148 QVNGRVANDGPAWNIPAGLVLAGAEAIDTVTSETYVWRTGDPHRSSRELHEAILALVFLGGLVWSKESAGLNQKVGGTFTDEQRERGG 235
[Close]
BLAST of mRNA_P-littoralis_Contig122.38.1 vs. uniprot
Match: D7G6J6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J6_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.580e-27
Identity = 74/131 (56.49%), Postives = 87/131 (66.41%), Query Frame = 3 
Query: 1896 GEASTLHRRDDKGGDGRFLSSEQGASRRPADTSSQWKAHAVEDIENAVPGSCSNCGEYRELRWFFARDGKRRVEVPDHTVGKN----RCNKNSKRPRGKFMPNDDAVKTITREGLRKAVQTEARNVANKTT 2276
            G A TL+ R+ KGGDGR  SSEQGAS RP DTS++W   AVE+   A   +CSNCGE R+L WFF   GKRRV V DH VG      RCNK   +PRG F P +  VKTIT++GL KAV  EA+ VANK +
Sbjct:  386 GAAGTLYGRE-KGGDGRSTSSEQGASMRPTDTSARWMYQAVEESLQAEEATCSNCGEPRKLSWFFYGGGKRRVVVLDHMVGGESGGVRCNKYPNKPRGVFTPTNKNVKTITKDGLLKAVGREAKRVANKAS 515
[Close]
BLAST of mRNA_P-littoralis_Contig122.38.1 vs. uniprot
Match: A0A6H5KK46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK46_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.780e-18
Identity = 60/113 (53.10%), Postives = 72/113 (63.72%), Query Frame = 3 
Query: 1929 KGGDGRFLSSEQGASRRPADTSSQWKAHAVEDIENAVPGSCSNCGEYRELRWFFARDGKRRVEVPDHTVGKN----RCNKNSKRPRGKFMPNDDAVKTITREGLRKAVQTEAR 2255
            KGG  +    EQGAS RPADTS+QW   AVE+   A P +CS+C E REL  FF   G RRV V DH VG      RCNK + +PRG FM +D+ VKTIT++GL KAV+   R
Sbjct:  362 KGGRRQIPLLEQGASIRPADTSAQWTDPAVEEPLRAEPTTCSSCEELRELSLFFYGGGTRRVVVLDHMVGGESGGVRCNKYANKPRGVFMSSDEKVKTITKDGLLKAVRKRRR 474
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KF00_9PHAE1.140e-7289.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLA4_9PHAE2.350e-5258.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9F7_9PHAE5.610e-4565.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI34_9PHAE2.810e-4260.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K367_9PHAE2.500e-3860.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU89_9PHAE1.820e-3358.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCN5_9PHAE5.090e-3260.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV88_ECTSI4.150e-2873.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6J6_ECTSI2.580e-2756.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KK46_9PHAE1.780e-1853.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:128447..135601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size4070
Hectar predicted targeting categoryother localisation
Exons10
Cds size1065
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.38.1prot_P-littoralis_Contig122.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 129174..131407 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789526.3808765-UTR-P-littoralis_Contig122:128446..1285871680789526.3808765-UTR-P-littoralis_Contig122:128446..128587Pylaiella littoralis U1_48UTRP-littoralis_Contig122 128447..128587 +
1680789526.3921108-UTR-P-littoralis_Contig122:129169..1291731680789526.3921108-UTR-P-littoralis_Contig122:129169..129173Pylaiella littoralis U1_48UTRP-littoralis_Contig122 129170..129173 +
1680789526.450582-UTR-P-littoralis_Contig122:131407..1318031680789526.450582-UTR-P-littoralis_Contig122:131407..131803Pylaiella littoralis U1_48UTRP-littoralis_Contig122 131408..131803 +
1680789526.4667032-UTR-P-littoralis_Contig122:132236..1324001680789526.4667032-UTR-P-littoralis_Contig122:132236..132400Pylaiella littoralis U1_48UTRP-littoralis_Contig122 132237..132400 +
1680789526.481846-UTR-P-littoralis_Contig122:133062..1331881680789526.481846-UTR-P-littoralis_Contig122:133062..133188Pylaiella littoralis U1_48UTRP-littoralis_Contig122 133063..133188 +
1680789526.4910407-UTR-P-littoralis_Contig122:133388..1341661680789526.4910407-UTR-P-littoralis_Contig122:133388..134166Pylaiella littoralis U1_48UTRP-littoralis_Contig122 133389..134166 +
1680789526.5032578-UTR-P-littoralis_Contig122:134205..1356011680789526.5032578-UTR-P-littoralis_Contig122:134205..135601Pylaiella littoralis U1_48UTRP-littoralis_Contig122 134206..135601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789526.4020717-CDS-P-littoralis_Contig122:129173..1292471680789526.4020717-CDS-P-littoralis_Contig122:129173..129247Pylaiella littoralis U1_48CDSP-littoralis_Contig122 129174..129247 +
1680789526.4105887-CDS-P-littoralis_Contig122:129440..1296721680789526.4105887-CDS-P-littoralis_Contig122:129440..129672Pylaiella littoralis U1_48CDSP-littoralis_Contig122 129441..129672 +
1680789526.421252-CDS-P-littoralis_Contig122:130178..1303041680789526.421252-CDS-P-littoralis_Contig122:130178..130304Pylaiella littoralis U1_48CDSP-littoralis_Contig122 130179..130304 +
1680789526.4358006-CDS-P-littoralis_Contig122:130514..1306851680789526.4358006-CDS-P-littoralis_Contig122:130514..130685Pylaiella littoralis U1_48CDSP-littoralis_Contig122 130515..130685 +
1680789526.4429944-CDS-P-littoralis_Contig122:130945..1314071680789526.4429944-CDS-P-littoralis_Contig122:130945..131407Pylaiella littoralis U1_48CDSP-littoralis_Contig122 130946..131407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.38.1

>prot_P-littoralis_Contig122.38.1 ID=prot_P-littoralis_Contig122.38.1|Name=mRNA_P-littoralis_Contig122.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=355bp
MRKSRKSAVLEKAAKGTHLLSTFFEAAPAPAPARAHLGPFGARDVGEHAR
AGGKQTSPSAGNGLRDWTPWGSSAVSGGPAPAEGMRGDLSTPSSSLAGDV
FEAGDEGDDDALTPPRSRGKGKARGGRDQPSKWARPAPPSPGFDTGDIEA
ATRNSLLSLDGNGGGGGSSSPDVVDLADEGQGGGADGARRPVVASGAGRN
EAGSEPLLEPHQEVLFNAVEASMADSSFSCGQRCKFEEIAQGTAEHVDMA
EATPEDVLRAACREYTIGRVLALDIIQQRELNRTELRNGGMERLDITRSF
KGRCNYANVYQWSDKAATLRMVDAWGSETVLCPMQVLALWCTRGMRCSCA
VPSG*
back to top

mRNA from alignment at P-littoralis_Contig122:128447..135601+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.38.1 ID=mRNA_P-littoralis_Contig122.38.1|Name=mRNA_P-littoralis_Contig122.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7155bp|location=Sequence derived from alignment at P-littoralis_Contig122:128447..135601+ (Pylaiella littoralis U1_48)
GGGTAAGGTTGGCGACGGTTGGGGCGATTTTGTGGGCCCTCATTGTGTCT
CCTCTACGTTGCCAAATCAAGTCGCCAACAAGTCTAGGTCGTATGTTGCA
TCGCCCAACCGTTAGGTTCTGCCGCACTGATTCAAATCGAGGTAAGCACG
GCGGCGGTAGCATGAGACATTGACTCCAGCGTCGCACGGTGGAGACGAGA
AGAGAGCCTCCCACGTGTGTGTGACGGCGTGTACAAGTATTCTCTCCTCC
AAACGGCCCGTGACGGGAAAGCGCGCCTTCCTCTCGTTGACACGGATGTT
GTATGGATGCGTGTAACATCCTTCCAGACTACTGCTGTATAGCCTGTGAT
CCAAAAAACTCTCCCACAGATTGAAAATCCAGCATGGTCAACTTGAAAAT
ATTTGAAAATACGGTCGCTTCTCTTTGCTCGTACCGCCGCGTACATGGGG
GCGGCGTTTGCTTGCAACGTGTCCGCACTCAAAAAAGGCCAGGCCGGGTT
TGCAGATGTGTGACACATGCTTTGAGCGTCAGCTTCATGACCCAGACTTG
GGGATAGTCCAGCGTCGTCCGAGTCTTGGCGTGAATGCGGGTGATCAACC
GAGGTTGATGTTCCAGGTCGTTGTCAAATCGACCTGGGAGTTGAAACAGC
AACCATCGTACGCATCTTTCTGACACTACGGCTTCATTGTTGCCGCGTGG
TCTTTGCTTGACAAATGTCGCAGAAAGATGAGGAAATCCCGGAAGAGTGC
GGTTCTGGAGAAGGCCGCAAAGGGCACGCATTTACTGAGCACGTTCTTCG
AGGTGCGTATCCATTTGGAGGAGGAGGAGGCTACATGACACAGCCTGCTA
GCGTGTACAGCAACACTCCCACGCGAGAGTAGCAAGCATCAATGTTGGCC
CCTATCACATTCGTACCGACACCAGTGTTTCCCGACGGTTACAGTAACAA
CAGAGCACTTGGTTGACACTACTGTACATCCTCGCGTGCGTCCTGGCTGC
CCCTGCCCCGGCTCCTGCCCGAGCCCATCTCGGACCCTTTGGCGCCCGCG
ACGTCGGCGAACATGCACGTGCCGGGGGCAAGCAAACATCTCCAAGCGCC
GGCAACGGGTTACGTGATTGGACACCATGGGGTAGCAGTGCCGTGTCGGG
GGGACCTGCCCCCGCCGAAGGAATGAGGGGTGATCTGTCGACCCCGTCGT
CGTCACTCGCCGGGGACGTTTTTGAGGTACGGGGAAAGTGGCTAGGTTAG
GGGCTTCGATGGGGTCGGATTTGTTCGGCAGGGAGTTGGCGTTGGGTGTC
GTTAGTTGTGATTGGCGTCTATTTCACGCAGACTCAGAGTGTAACGTTAG
TGGCCAGTGTTGGCTGCACAACAGACGACAGCAGATATACTGCTGTCGAT
ACTTACCTGCCTTCCTTTTATATTTTTGTACTGTACGACTATATACCTGC
AAATTCGCGAGGAGTGTATATTTTCCCCCACATACACCAAACAAGCCTCG
CGTAGGTTTGCACCTTTTTTGTGTCAACTTATCATGCACACCCCATCGCC
CCCATACCATCACTCTGCTCATCCTCTCTTCGCCCTCCATTTGGTGCTAT
CAAAGCGTAAATGGTACGTATTTTAAAATACTGGTGTAAAACACGGTGTT
GACGACGACGTTGACCTCCTACACGCGAGTATTGTCCAGAACGAAAAACC
ATCCAGCCTTCCACTCTTATACTGAATTTCAGGCCGGTGATGAAGGGGAT
GACGATGCGTTGACGCCCCCAAGATCGCGGGGGAAGGGGAAAGCCCGAGG
GGGAAGAGACCAACCGAGCAAGTGGGCCCGCCCTGCACCCCCCAGTCCAG
GCTTCGATGTGAGAAACAAAGGAGGAAATAGTTCAGTATGATTACGTTCC
TCTTCCCTTTGATATCGGTGTCGTGCTGGCTGACATCACCCAAACATTGC
GTAGCACGTTGAAGATCCACCGTCCTCCGCGTGACTACCGTGCATAGATC
ATCTGTTTAGTAATGCTGGTAAACCACAGCGACACGACTTAAGCGTGACA
TATTCCGTTTCCTTGCAGACTGGTGATATCGAGGCCGCGACCAGGAACAG
CCTCTTGTCGTTGGACGGCAACGGCGGCGGCGGCGGTTCGAGCAGCCCAG
ACGTCGTCGATCTCGCCGACGAAGGCCAGGGTGGCGGTGCCGACGGTGCG
AGGCGACCGGTGGTCGCGAGCGGGGCGGGGAGGAACGAGGTTAGTCTTAT
AGATTATTGGTCGTGCAGGTACGTTTTATGATGATCGTATGTCGTATGGT
TCAGCCAATCTGCCGCTTTTTTCTTTCGAGGGGGCTGGTGATAAGTGTCA
AGCCATATCATACACTCACTGTCGTCAGATTAGACGGTGTGACCGCTGTC
GTCCACTCTGTAAGCTTCCAGCCGCCCGCCCCTTCGGCAACCCACCAGTG
CCCCTCCCTCCCGTCCCGGTGCCCCTCTCCTCCTCTTTTTGTGTGAAAGG
CCGGTTCCGAACCACTCCTAGAACCCCACCAGGAGGTATTGTTCAATGCA
GTGGAGGCGAGCATGGCTGATTCCTCGTTCTCGTGTGGTCAACGCTGCAA
GTTTGAAGAAATCGCCCAAGGCACCGCCGAACACGTGGACATGGCCGAGG
CAACACCTGAAGATGTTCTCAGGGCTGCATGCCGCGAGTACACAATAGGG
CGAGTACTTGCATTGGACATAATACAACAGAGGGAGCTCAACCGCACGGA
GCTACGAAATGGCGGTATGGAACGGTTGGACATCACGAGGAGCTTCAAGG
GACGCTGTAACTACGCCAACGTGTATCAGTGGTCCGACAAGGCAGCAACG
CTCCGAATGGTCGATGCGTGGGGGAGCGAGACGGTATTATGTCCAATGCA
AGTACTCGCCCTATGGTGTACTCGCGGCATGCGGTGCAGCTGTGCGGTGC
CGTCCGGTTGAAGATCGATGGACATGATTGGGCAGCTGGTCCGCTGCGAC
TAGTGATGTCCGGCGAGGGTCTGTTTGCTTCGGCGGCGAAGTACGGCAAG
GGTCTGCTCAACCCACCGACCGAGGAGAGAGCCAGACTGCCTCGCCAGAA
GAACGGGCGTGTCGCAAACGACGGACCCGCATGGTTGGTACCGGCGGGGC
TGGTCTTGGCGGGTGATGGCGCCCTCCAGGCCGTGACATGGGAGACATAC
GTATGGCGGAGAGGTGACCCGCATTTATCTTCGCGGGAGCTGCACGAGGC
CATCTTACCGCTCGGGATTCTCCGGGGCCTAGTTTTCAGTCAGGGATCCA
CCAGCCTGAAGCAAAAGCTAGGTGGTACCTTCACCGACGAACAAAGAAGG
CGCGGGGGTAAGAACATGCTCCCTACGACAAGTTAGTCTGTACTTGTGGT
TGTTCGGTGTCTGTTTATGGATGTTGTTCTTTATGCTGTTGTTGTTGTTG
CCGCCAAAGCGTGCTATATGACTCGGAATGAAAATTTGACAGTCGATCGA
ACAGAACGCGATGCCTTAACAGCGAGCACCTGGTGCATGGTTGCTTTGAG
CCTATTCCCCCCGCCCGTCGCGTGCATTGCAGGCGTTTCCGTTTCTGTTG
TTCGAGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
CGTCGCCTTGTAGTCTAGATATTTCCCGTTCGTCACATATACACCAGCGC
CTTTTCTGGTGTGCCCCTCAATGATTGTGGTCCTCGGAATTACCGCCCCC
TTTTTGGTCGAACTCTTGCGGTATGTGCGTGCGATCACAGGCAACAACAA
CTTCGGCCAGACGAAAGGCGAGACCGTGGCGGCCGCGAGGGCTCGAGAGG
CGGCCGCGAATGAAGCTCATGACGCCGCCACCACCGACGAGCAGAAGGCA
GCGGCGAAAGAGAAGCTGAACGTTGCGATCAGGAAGCGCAAGCGCGCCGT
GAAGGCGAGGGATGACCAATCCACGGGCGTTAAGCCGGGGGGATATCGAC
GAGCACGTAGTCGTCGTTGTTGTTGTTGTTGTTGCTGCTGTTGTTGTTGT
TGTTGTTGTCGTTGTTGTTGTTGTTTTAGCGGATGCCCAACGATCGAACG
CGTCTGTCTCCGGCGAGTGAATGAAATGTAACCATGTATTGACAGGTCGA
ACGCAACTATTTTCAACGCGCGCAGCTGGTGCATTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGCGGTGAGAGTTGTTACTGTTGT
TGTTGCTGTTGTTGTTGTTGTTGTTGTTGCTTGTCCCCCACGTCCACCCG
CCATTCTTGAGGTACATGTACCCGACGCAAGCACCACACAGCCGCTTCCG
CGCCATCGACGCGTCCCTCGAAGAAGAGTAAATAGTACTCCGGAGTATTT
GTTTGTGTACTGCTCAACGAAGACGAACGCCAACCAATTTGTCGCTCAGA
ATTTTCGACTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTCGTTGTTGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCT
GCTGCTGCGTGAGTTGACAACGACTAGCACGCATTTTCCCTGTATTCTTG
TTTCTCGTTTTTGCAGCAAGGACGGCCACAGTGGACGGGGTGAAGGTCAC
GGTGCCCGAGGCCGTGTGGGATGGACACGAGGCCGCGACACCCGTCCAGC
AAGCGGCCATGGATCAGAGCTCGGCCGACAGATCTCGCGGAGGCAAGCTG
TTGTTGTTGTTGTTGATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
AACCATGGAAACTGATGACGAACCGCTCTCATTCATTCATAAACCCTCCA
TGCCCACAACGACTGAATGGCGCGCTGTTTCCCAGCGTTGCTCATCATTT
TTGTCATTGTTATTGTGCGATTCGTCTACTGTCCCCATGCAGGCGAGGCC
TCAACACTCCACAGGCGTGATGATAAGGGGGGCGATGGCCGATTCCTCTC
GAGCGAACAAGGGGCTTCGAGGCGCCCCGCCGACACCTCCAGCCAGTGGA
AAGCCCACGCCGTCGAAGACATCGAGAACGCAGTGCCAGGGAGTTGCTCC
AACTGCGGAGAGTACAGAGAGTTGCGGTGGTTTTTTGCCAGGGACGGCAA
GCGCAGAGTGGAGGTACCGGACCACACGGTTGGCAAGAACAGATGCAACA
AAAATTCGAAACGACCGCGTGGCAAGTTCATGCCCAACGACGACGCGGTG
AAGACTATCACAAGAGAAGGCCTCCGCAAGGCAGTCCAGACGGAGGCACG
AAATGTGGCCAACAAGACAACAGAGGTCAAATAGTTTAGCAGGGTGGATG
GTGTTGCCCTATAGACAGTTGTCGACGACAGGTGGGCCCCGCAGTTTTGG
TCGCCTTGGAATTTCTCTCGGTATCGACGATTGGCACAGAAGGGCAATAT
TATGTCTGTTGTCTGGTCCACTACACGTGACGTAGTGGATATAGTGTAGT
ACGGAGGGCTTCAAGGTCGCGTTTCGTGTTGGTGCGGAAACGGAGTCGAC
GTGGACTTCAATGACGCCCAGACCTGCTACCGCGAGGACTCTCTGTGGCA
TGAGGGATCATGGTCAACAGGTGCCACCAGATCTGGTGTGATCCTCCTGA
TTTGGCGTAAGGGAGCTTCGGGTAGCCTGGTCGAGAGTTAAAAACGACCG
GCTGTGTACACCCTGTGGTGGCGTTAGAGAGATGGGGGCTAGTAAGAAAC
CGCCCGCAGACGTCCAGAGTAGACGAGTAGATATCATCCAGTTTGGTCAG
TTAGGGATCGGTTTGCGTCGTCGTGCAAATTGAATTCGAAGCGTTGTTTC
ACTTGGCGACGGCTTTCATTCAGGCATTGACGATGGCTTGTATTCGAGCA
GGCACGAGCATCCTCGTGTGACTTAGAGTATATAGTGGGTGCTGCCGGTG
TCGATTTAGCAATATACACCGGTACGCGTGTGCTGCTGTAGAACTACCCA
ATTGGTCCTTTTTGTTACATAGTTGGCGTAGATAGAGACAGAGAAATGGA
ATTTTTTCGTGTCCCATCGTCATTTATTCCGCTACGTAGATTTTTTGTCA
GCAGATCCAGCGTGTGTGTCCTCAATCAGAGTTAGTTTTACGATCACGGC
CCGATTGGATGTGAACACTTGTTGGCCCCGATTATTCTCGTGTTCCCATG
TAATCACCCCTTTGTTACGAGGTTGTGTGTAGAGAGACAGTTTTTACGAT
CGTCCACCGTCCTTTAGACGGTACGTGGCCACACCACTTCTAATTTTTCG
GAGGTCGTGAATGTATATCGATGTCGCGTCAGTGGGCCTGTGTTGGGGGG
CTCTGTCTGGTGTGTTACATTTCTACCCAGCCATCACATATACGTCAAAT
GAGCGGGGTCGACGGAACGATTTTGATTGTTTTATTCGAGACGTACACTG
TTATTATGTATTCTTAGTTTGTGTTAGACCCCCAAGATTAGAAGTCGCGC
ATTGGTTACCCTCGAAACTAGGATTTCGGCGAAATCATTTCGTATTATTT
GTAAAATCTATATGGCATTCATAGATAGGTGTTGTACGTTCGTGTGAATT
GATTTCCCTCGGTATCATTCACGCCTGCCCATCATTTTGTTCCCATTTTA
TTCAGGACGTGGGGGGTGTTCAGGAAGAGACACTGTGGTATTCTTATGTT
TTCGGTCTTCCAATTGTATGAATCACTTGTTGTGTGCCTGTGGGTTTATT
TTAGACTATATTCGGCACTTTTTTACGTTCAACACCCGGTTGAAATGGGT
AGGTGGTAGACTTCGCAAATATTTTCGCGGGATATCGGTATGTAGATGAT
GTTGGGGTTCTTGGTCATCAGCGTGATTCCTTCTCATTTTCTATTTTTCT
TGCAATGAAAGGCAACCCGTCGACATTTGGTCTCTTTGTATTTCTGATTT
GAATGTTGGGTTTGTTGTCGGGGCACCATGGTACACAGTCTTGTGGGACT
TCATGTCCGGTGTCTATCGCCGTCGCGGTTTATAGAACGCCTCGGTCGGG
CGGTCGTTACGTACAAAGAATTCTTGAGGGGGGCTCCAGTAGTGTAGAAG
GCGCCATGTTGATTACACACCAGGAAAAAACACGGGAAAATGAAATACAT
TTGCA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig122:128447..135601+

>mRNA_P-littoralis_Contig122.38.1 ID=mRNA_P-littoralis_Contig122.38.1|Name=mRNA_P-littoralis_Contig122.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1065bp|location=Sequence derived from alignment at P-littoralis_Contig122:128447..135601+ (Pylaiella littoralis U1_48)
ATGAGGAAATCCCGGAAGAGTGCGGTTCTGGAGAAGGCCGCAAAGGGCAC
GCATTTACTGAGCACGTTCTTCGAGGCTGCCCCTGCCCCGGCTCCTGCCC
GAGCCCATCTCGGACCCTTTGGCGCCCGCGACGTCGGCGAACATGCACGT
GCCGGGGGCAAGCAAACATCTCCAAGCGCCGGCAACGGGTTACGTGATTG
GACACCATGGGGTAGCAGTGCCGTGTCGGGGGGACCTGCCCCCGCCGAAG
GAATGAGGGGTGATCTGTCGACCCCGTCGTCGTCACTCGCCGGGGACGTT
TTTGAGGCCGGTGATGAAGGGGATGACGATGCGTTGACGCCCCCAAGATC
GCGGGGGAAGGGGAAAGCCCGAGGGGGAAGAGACCAACCGAGCAAGTGGG
CCCGCCCTGCACCCCCCAGTCCAGGCTTCGATACTGGTGATATCGAGGCC
GCGACCAGGAACAGCCTCTTGTCGTTGGACGGCAACGGCGGCGGCGGCGG
TTCGAGCAGCCCAGACGTCGTCGATCTCGCCGACGAAGGCCAGGGTGGCG
GTGCCGACGGTGCGAGGCGACCGGTGGTCGCGAGCGGGGCGGGGAGGAAC
GAGGCCGGTTCCGAACCACTCCTAGAACCCCACCAGGAGGTATTGTTCAA
TGCAGTGGAGGCGAGCATGGCTGATTCCTCGTTCTCGTGTGGTCAACGCT
GCAAGTTTGAAGAAATCGCCCAAGGCACCGCCGAACACGTGGACATGGCC
GAGGCAACACCTGAAGATGTTCTCAGGGCTGCATGCCGCGAGTACACAAT
AGGGCGAGTACTTGCATTGGACATAATACAACAGAGGGAGCTCAACCGCA
CGGAGCTACGAAATGGCGGTATGGAACGGTTGGACATCACGAGGAGCTTC
AAGGGACGCTGTAACTACGCCAACGTGTATCAGTGGTCCGACAAGGCAGC
AACGCTCCGAATGGTCGATGCGTGGGGGAGCGAGACGGTATTATGTCCAA
TGCAAGTACTCGCCCTATGGTGTACTCGCGGCATGCGGTGCAGCTGTGCG
GTGCCGTCCGGTTGA
back to top