mRNA_P-littoralis_Contig122.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.37.1
Unique NamemRNA_P-littoralis_Contig122.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig122.37.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.170e-5
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:  175 IQGHPDELDDDNLEGEDSQDEEEQDLDILAPVAATLNEYSEQ 300
            I G  ++LDDDN+ GEDS DE EQDL+IL+PVAA LNE+S Q
Sbjct:   50 ILGFSEDLDDDNMVGEDSDDEVEQDLEILSPVAAMLNEHSGQ 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KW14_9PHAE5.170e-566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:123489..124249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size301
Hectar predicted targeting categoryother localisation
Exons3
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789524.753978-CDS-P-littoralis_Contig122:123488..1236071680789524.753978-CDS-P-littoralis_Contig122:123488..123607Pylaiella littoralis U1_48CDSP-littoralis_Contig122 123489..123607 -
1680789524.7645335-CDS-P-littoralis_Contig122:123873..1239431680789524.7645335-CDS-P-littoralis_Contig122:123873..123943Pylaiella littoralis U1_48CDSP-littoralis_Contig122 123874..123943 -
1680789524.7798297-CDS-P-littoralis_Contig122:124138..1242251680789524.7798297-CDS-P-littoralis_Contig122:124138..124225Pylaiella littoralis U1_48CDSP-littoralis_Contig122 124139..124225 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789524.793935-UTR-P-littoralis_Contig122:124225..1242491680789524.793935-UTR-P-littoralis_Contig122:124225..124249Pylaiella littoralis U1_48UTRP-littoralis_Contig122 124226..124249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.37.1prot_P-littoralis_Contig122.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 123489..124225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.37.1

>prot_P-littoralis_Contig122.37.1 ID=prot_P-littoralis_Contig122.37.1|Name=mRNA_P-littoralis_Contig122.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
MDPNTLRDVVSGSKEGSGPSPVKPRDVFMGVDSPAEDSDDRAHGGDSPTP
IQGHPDELDDDNLEGEDSQDEEEQDLDILAPVAATLNEYSEQ
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mRNA from alignment at P-littoralis_Contig122:123489..124249-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.37.1 ID=mRNA_P-littoralis_Contig122.37.1|Name=mRNA_P-littoralis_Contig122.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=761bp|location=Sequence derived from alignment at P-littoralis_Contig122:123489..124249- (Pylaiella littoralis U1_48)
TCAAAGGGTTGAACAGGGTGTGGAATGGACCCGAATACTCTGCGCGATGT
GGTCTCCGGATCGAAGGAGGGGTCCGGACCATCGCCAGTCAAGCCGAGAG
ACGTGTTCATGGTGAGCTTATGTATACCCTCCTATCGCTGCCTTCCTCAT
CTCTGGTGTCAAGAGGTTGACAGGAAAAGCCAATTTTTATTTTTAATCCA
AGCGCTTTCTCCTTCTGGGTGAGAGAAAAGTACTCCTGCATTCAGCCCAT
GTAATCTACTAACTCCCCTTCTTTGTTGTTGTTTTCTCTCTCTATTCCTC
CCGTAGGGAGTGGATTCACCCGCAGAGGATAGCGACGACCGCGCGCATGG
AGGTGATTCTCCAACGCCAATCCAAGGTACCTTTGGCTATTTTGCAAAAC
ACACTACGGGTTCTGACCCTTGAACGTCTGCAGTGGTTGCCGTTGTTTGT
CACATGCTAAGACAAAAATATGACTCCCTGTCCCTGCTCGGTACCTTGTT
CCATCGCGGACGTCGTCCATGGCCACAGATTTGTTCAAAGATTCGTGATA
ATATTGAAGAACCCATAATCCGGAGTAGGATTCAGCATTACAGAAAATCA
GGCCTTGGAGCTCATGCGTTCAACTGTTCGATCTGATTCAAGGTCACCCG
GATGAATTGGACGATGACAACCTGGAGGGAGAAGACTCACAAGATGAGGA
GGAACAGGATTTGGATATTCTAGCCCCCGTCGCTGCAACGCTGAATGAGT
ACTCAGAGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig122:123489..124249-

>mRNA_P-littoralis_Contig122.37.1 ID=mRNA_P-littoralis_Contig122.37.1|Name=mRNA_P-littoralis_Contig122.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig122:123489..124249- (Pylaiella littoralis U1_48)
ATGGACCCGAATACTCTGCGCGATGTGGTCTCCGGATCGAAGGAGGGGTC
CGGACCATCGCCAGTCAAGCCGAGAGACGTGTTCATGGGAGTGGATTCAC
CCGCAGAGGATAGCGACGACCGCGCGCATGGAGGTGATTCTCCAACGCCA
ATCCAAGGTCACCCGGATGAATTGGACGATGACAACCTGGAGGGAGAAGA
CTCACAAGATGAGGAGGAACAGGATTTGGATATTCTAGCCCCCGTCGCTG
CAACGCTGAATGAGTACTCAGAGCAG
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